RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	RUD3	Q12234	484 aa	Known RBP	4.66	□□□□□ -1.66
UBI4	YLL039C	LCB4	Q12246	624 aa		4.66	□□□□□ -1.66
UBI4	YLL039C	ARP7	Q12406	477 aa		4.66	□□□□□ -1.66
UBI4	YLL039C	SOD2	P00447	233 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	YPK1	P12688	680 aa	Known RBP	4.65	□□□□□ -1.67
UBI4	YLL039C	RPO26	P20435	155 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	CKI1	P20485	582 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	CDC10	P25342	322 aa	Known RBP	4.65	□□□□□ -1.67
UBI4	YLL039C	SRB4	P32569	687 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	RAD5	P32849	1169 aa	Predicted RBP	4.65	□□□□□ -1.67
UBI4	YLL039C	SWE1	P32944	819 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	CNS1	P33313	385 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	TFC3	P34111	1160 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	COY1	P34237	679 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	ECM13	P38195	257 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	ATG12	P38316	186 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	OCA5	P38738	679 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	SHU2	P38957	223 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	CCT4	P39078	528 aa	Known RBP	4.65	□□□□□ -1.67
UBI4	YLL039C	CAJ1	P39101	391 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	ERP2	P39704	215 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	YIL161W	P40449	235 aa	Known RBP	4.65	□□□□□ -1.67
UBI4	YLL039C	TMA108	P40462	946 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	SAP185	P40856	1058 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	CTK3	P46963	296 aa	Predicted RBP	4.65	□□□□□ -1.67
UBI4	YLL039C	APT1	P49435	187 aa	Known RBP	4.65	□□□□□ -1.67
UBI4	YLL039C	PEX31	P53203	462 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	YNL144C	P53907	740 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	BOP3	P53958	396 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	DIG1	Q03063	452 aa	Known RBP	4.65	□□□□□ -1.67
UBI4	YLL039C	NGL3	Q03210	505 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	IVY1	Q04934	453 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	YDR278C	Q05612	105 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	NUT2	Q06213	157 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	VAC14	Q06708	880 aa		4.65	□□□□□ -1.67
UBI4	YLL039C	YLR462W	O13556	202 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
UBI4	YLL039C	YMR085W	P0CF18	432 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	YIH1	P25637	258 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	TOD6	P34219	525 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	YBL055C	P34220	418 aa	Predicted RBP	4.64	□□□□□ -1.67
UBI4	YLL039C	EXO84	P38261	753 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	RCK2	P38623	610 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	YHL012W	P38709	493 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	YHL049C	P38722	271 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	LIN1	P38852	340 aa	Predicted RBP	4.64	□□□□□ -1.67
UBI4	YLL039C	PRM9	P39551	298 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	LCP5	P40079	357 aa	Predicted RBP	4.64	□□□□□ -1.67
UBI4	YLL039C	YFL064C	P43540	174 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	BRO1	P48582	844 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	NOG2	P53742	486 aa	Known RBP	4.64	□□□□□ -1.67
UBI4	YLL039C	YNL247W	P53852	767 aa	Known RBP	4.64	□□□□□ -1.67
UBI4	YLL039C	YNL040W	P53960	456 aa	Predicted RBP	4.64	□□□□□ -1.67
UBI4	YLL039C	KTR6	P54070	446 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	RKM2	Q03942	479 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	SND1	Q04007	877 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	ECM38	Q05902	660 aa	Predicted RBP	4.64	□□□□□ -1.67
UBI4	YLL039C	RSA3	Q05942	220 aa	Known RBP	4.64	□□□□□ -1.67
UBI4	YLL039C	STE23	Q06010	1027 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	YCS4	Q06156	1176 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	NDL1	Q06568	189 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	YDL073W	Q07454	984 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	AAD4	Q07747	329 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	APL5	Q08951	932 aa	Known RBP	4.64	□□□□□ -1.67
UBI4	YLL039C	THI21	Q08975	551 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	SVS1	Q12254	260 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	PDH1	Q12428	516 aa	Known RBP	4.64	□□□□□ -1.67
UBI4	YLL039C	YBL111C	Q3E7Y5	667 aa		4.64	□□□□□ -1.67
UBI4	YLL039C	HIS5	P07172	385 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	PMS1	P14242	873 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	SIR1	P21691	654 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	PUP3	P25451	205 aa	Known RBP	4.63	□□□□□ -1.67
UBI4	YLL039C	SGF29	P25554	259 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	MGE1	P38523	228 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	FSH1	P38777	243 aa	Known RBP	4.63	□□□□□ -1.67
UBI4	YLL039C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
UBI4	YLL039C	KHA1	P40309	873 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	UFE1	P41834	346 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	RTT101	P47050	842 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	MRX6	P48564	524 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	SAM37	P50110	327 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	COQ6	P53318	479 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	COP1	P53622	1201 aa	Known RBP	4.63	□□□□□ -1.67
UBI4	YLL039C	SFB2	P53953	876 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	TOF2	Q02208	771 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	YPL014W	Q02606	381 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	PIR3	Q03180	325 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	ARA2	Q04212	335 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	YMR114C	Q04471	368 aa	Known RBP	4.63	□□□□□ -1.67
UBI4	YLL039C	UFO1	Q04511	668 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	THI7	Q05998	598 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	KAP95	Q06142	861 aa	Known RBP	4.63	□□□□□ -1.67
UBI4	YLL039C	IRC10	Q08118	586 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	YOR387C	Q08910	206 aa		4.63	□□□□□ -1.67
UBI4	YLL039C	YPL225W	Q08971	146 aa	Known RBP	4.63	□□□□□ -1.67
UBI4	YLL039C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	RIP-Chip
UBI4	YLL039C	FMP27	Q06179	2628 aa		4.62	□□□□□ -1.67
UBI4	YLL039C	RPS13	P05756	151 aa	Known RBP	4.62	□□□□□ -1.67
UBI4	YLL039C	RPS14A	P06367	137 aa	Known RBP	4.62	□□□□□ -1.67
UBI4	YLL039C	RPB2	P08518	1224 aa	Known RBP	4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 28 ms