RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	IZH4	Q99393	312 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	UBR1	P19812	1950 aa		4.94	□□□□□ -1.62
VPS29	YHR012W	LEU1	P07264	779 aa	Known RBP	4.93	□□□□□ -1.62
VPS29	YHR012W	RPL1A	P0CX43	217 aa	Known RBP	4.93	□□□□□ -1.62
VPS29	YHR012W	RPL1B	P0CX44	217 aa	Known RBP	4.93	□□□□□ -1.62
VPS29	YHR012W	PMS1	P14242	873 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	RDS2	P19541	446 aa	Known RBP	4.93	□□□□□ -1.62
VPS29	YHR012W	PHO13	P19881	312 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	AAT2	P23542	418 aa	Known RBP	4.93	□□□□□ -1.62
VPS29	YHR012W	MEI4	P29467	408 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	TFA2	P36145	328 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	TAE1	P38340	232 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	RPH1	P39956	796 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	SLX8	P40072	274 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	KHA1	P40309	873 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	YIL108W	P40483	696 aa	Known RBP	4.93	□□□□□ -1.62
VPS29	YHR012W	NRM1	P53718	249 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	TEP1	P53916	434 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	CDC14	Q00684	551 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	MSH6	Q03834	1242 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	ARG7	Q04728	441 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	THI7	Q05998	598 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	CMS1	Q07897	291 aa	Known RBP	4.93	□□□□□ -1.62
VPS29	YHR012W	ATG9	Q12142	997 aa		4.93	□□□□□ -1.62
VPS29	YHR012W	GAL4	P04386	881 aa		4.92	□□□□□ -1.62
VPS29	YHR012W	TUB3	P09734	445 aa	Known RBP	4.92	□□□□□ -1.62
VPS29	YHR012W	STE4	P18851	423 aa		4.92	□□□□□ -1.62
VPS29	YHR012W	MRS6	P32864	603 aa	Known RBP	4.92	□□□□□ -1.62
VPS29	YHR012W	MRPL10	P36520	322 aa		4.92	□□□□□ -1.62
VPS29	YHR012W	ARL1	P38116	183 aa	Known RBP	4.92	□□□□□ -1.62
VPS29	YHR012W	ECM2	P38241	364 aa	Known RBP	4.92	□□□□□ -1.62
VPS29	YHR012W	UBS1	P38290	277 aa		4.92	□□□□□ -1.62
VPS29	YHR012W	PCA1	P38360	1216 aa		4.92	□□□□□ -1.62
VPS29	YHR012W	PAN6	P40459	309 aa		4.92	□□□□□ -1.62
VPS29	YHR012W	RRT5	P43607	289 aa		4.92	□□□□□ -1.62
VPS29	YHR012W	BUD13	P46947	266 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS29	YHR012W	PCL10	P53124	433 aa		4.92	□□□□□ -1.62
VPS29	YHR012W	YGR127W	P53275	312 aa		4.92	□□□□□ -1.62
VPS29	YHR012W	RPL34A	P87262	121 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS29	YHR012W	RLI1	Q03195	608 aa	Known RBP	4.92	□□□□□ -1.62
VPS29	YHR012W	RPC11	Q04307	110 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS29	YHR012W	HBT1	Q07653	1046 aa	Known RBP	4.92	□□□□□ -1.62
VPS29	YHR012W	SEM1	O94742	89 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	ABF1	P14164	731 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	RED1	P14291	827 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	SPO12	P17123	173 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	TEC1	P18412	486 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	UBA1	P22515	1024 aa	Known RBP	4.91	□□□□□ -1.62
VPS29	YHR012W	PHO84	P25297	587 aa	Known RBP	4.91	□□□□□ -1.62
VPS29	YHR012W	EMC1	P25574	760 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	RAD5	P32849	1169 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS29	YHR012W	HIS2	P38635	335 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	DIA4	P38705	446 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS29	YHR012W	OTU2	P38747	307 aa	Known RBP	4.91	□□□□□ -1.62
VPS29	YHR012W	YMR124W	P39523	943 aa	Known RBP	4.91	□□□□□ -1.62
VPS29	YHR012W	ELO3	P40319	345 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	SET2	P46995	733 aa	Known RBP	4.91	□□□□□ -1.62
VPS29	YHR012W	TRF5	P48561	642 aa	Known RBP	4.91	□□□□□ -1.62
VPS29	YHR012W	YGL108C	P53139	140 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	SWC4	P53201	476 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	NOG2	P53742	486 aa	Known RBP	4.91	□□□□□ -1.62
VPS29	YHR012W	EGD1	Q02642	157 aa	Known RBP	4.91	□□□□□ -1.62
VPS29	YHR012W	CCE1	Q03702	353 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	DAS2	Q12084	232 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	RKM5	Q12367	367 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	HFA1	P32874	2273 aa		4.91	□□□□□ -1.62
VPS29	YHR012W	CSF1	Q12150	2958 aa		4.9	□□□□□ -1.62
VPS29	YHR012W	APA1	P16550	321 aa	Known RBP	4.9	□□□□□ -1.63
VPS29	YHR012W	SFL1	P20134	766 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	SLY1	P22213	666 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	CIN8	P27895	1000 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	PLC1	P32383	869 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	SPS19	P32573	292 aa	Known RBP	4.9	□□□□□ -1.63
VPS29	YHR012W	MKS1	P34072	584 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	YBL055C	P34220	418 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS29	YHR012W	CTF13	P35203	478 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	RRT2	P38332	387 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	PPE1	P38796	400 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	CEM1	P39525	442 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	ARG2	P40360	574 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	RPL34B	P40525	121 aa	Known RBP	4.9	□□□□□ -1.63
VPS29	YHR012W	MND2	P40577	368 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	RGD2	P43556	714 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	NBP35	P52920	328 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	RTS3	P53289	263 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	CSL4	P53859	292 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS29	YHR012W	MET14	Q02196	202 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	CIA1	Q05583	330 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	BDS1	Q08347	646 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	NRT1	Q08485	598 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	VPS68	Q12016	184 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	YDR061W	Q12298	539 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	SKM1	Q12469	655 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	YIL046W-A	Q3E7Z4	54 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	FRT1	Q99332	602 aa		4.9	□□□□□ -1.63
VPS29	YHR012W	CPA1	P07258	411 aa	Known RBP	4.89	□□□□□ -1.63
VPS29	YHR012W	PRP9	P19736	530 aa	Known RBP	4.89	□□□□□ -1.63
VPS29	YHR012W	DAL82	P21705	255 aa		4.89	□□□□□ -1.63
VPS29	YHR012W	PPH21	P23594	369 aa		4.89	□□□□□ -1.63
VPS29	YHR012W	RBK1	P25332	333 aa		4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 20.8 ms