RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W WHI2P12611 486 aa3.6□□□□□ -1.83
UPF3YGR072W CDC5P32562 705 aa3.6□□□□□ -1.83
UPF3YGR072W EXO1P39875 702 aa3.6□□□□□ -1.83
UPF3YGR072W YEL068CP39977 110 aa3.6□□□□□ -1.83
UPF3YGR072W MAM1P40065 302 aa3.6□□□□□ -1.83
UPF3YGR072W LAS21P40367 830 aa3.6□□□□□ -1.83
UPF3YGR072W MAF1P41910 395 aa3.6□□□□□ -1.83
UPF3YGR072W CSL4P53859 292 aaPredicted RBP3.6□□□□□ -1.83
UPF3YGR072W IDP3P53982 420 aaKnown RBP3.6□□□□□ -1.83
UPF3YGR072W VAM6Q07468 1049 aa3.6□□□□□ -1.83
UPF3YGR072W YER175W-AQ8TGU4 54 aa3.6□□□□□ -1.83
UPF3YGR072W SEM1O94742 89 aa3.59□□□□□ -1.83
UPF3YGR072W TY2A-LR1P0C2J4 438 aa3.59□□□□□ -1.83
UPF3YGR072W TY2A-FP0CX61 438 aa3.59□□□□□ -1.83
UPF3YGR072W TY2A-GR2P0CX62 438 aa3.59□□□□□ -1.83
UPF3YGR072W MRP7P12687 371 aa3.59□□□□□ -1.83
UPF3YGR072W YPK1P12688 680 aaKnown RBP3.59□□□□□ -1.83
UPF3YGR072W URE2P23202 354 aaKnown RBP3.59□□□□□ -1.83
UPF3YGR072W TY2A-CP25383 438 aa3.59□□□□□ -1.83
UPF3YGR072W GSY2P27472 705 aa3.59□□□□□ -1.83
UPF3YGR072W CDC15P27636 974 aa3.59□□□□□ -1.83
UPF3YGR072W PAH1P32567 862 aa3.59□□□□□ -1.83
UPF3YGR072W SIP1P32578 815 aa3.59□□□□□ -1.83
UPF3YGR072W MUD2P36084 527 aaKnown RBP3.59□□□□□ -1.83
UPF3YGR072W NOP4P37838 685 aaKnown RBP3.59□□□□□ -1.83
UPF3YGR072W YJR061WP40355 935 aa3.59□□□□□ -1.83
UPF3YGR072W DPH1P40487 425 aaKnown RBP3.59□□□□□ -1.83
UPF3YGR072W RRT6P53117 311 aaPredicted RBP3.59□□□□□ -1.83
UPF3YGR072W TY2A-DR2Q03483 438 aa3.59□□□□□ -1.83
UPF3YGR072W SPC19Q03954 165 aa3.59□□□□□ -1.83
UPF3YGR072W RCO1Q04779 684 aa3.59□□□□□ -1.83
UPF3YGR072W BSP1Q06604 576 aa3.59□□□□□ -1.83
UPF3YGR072W SWT1Q12104 458 aa3.59□□□□□ -1.83
UPF3YGR072W HUA2Q12134 243 aa3.59□□□□□ -1.83
UPF3YGR072W TY2A-BQ12260 438 aa3.59□□□□□ -1.83
UPF3YGR072W TY2A-OR2Q12293 438 aa3.59□□□□□ -1.83
UPF3YGR072W TY2A-DR1Q12392 438 aa3.59□□□□□ -1.83
UPF3YGR072W TY2A-OR1Q12439 438 aa3.59□□□□□ -1.83
UPF3YGR072W PNO1Q99216 274 aaKnown RBP3.59□□□□□ -1.83
UPF3YGR072W TY2A-DR3Q99303 438 aa3.59□□□□□ -1.83
UPF3YGR072W AAC1P04710 309 aa3.58□□□□□ -1.84
UPF3YGR072W CDC16P09798 840 aa3.58□□□□□ -1.84
UPF3YGR072W CDC24P11433 854 aaPredicted RBP3.58□□□□□ -1.84
UPF3YGR072W KGD2P19262 463 aaPredicted RBP3.58□□□□□ -1.84
UPF3YGR072W YAP1P19880 650 aaKnown RBP3.58□□□□□ -1.84
UPF3YGR072W SAN1P22470 610 aa3.58□□□□□ -1.84
UPF3YGR072W URK1P27515 501 aa3.58□□□□□ -1.84
UPF3YGR072W TFC3P34111 1160 aa3.58□□□□□ -1.84
UPF3YGR072W RPF2P36160 344 aaKnown RBP3.58□□□□□ -1.84
UPF3YGR072W MTG2P38860 518 aa3.58□□□□□ -1.84
UPF3YGR072W VPS8P39702 1274 aa3.58□□□□□ -1.84
UPF3YGR072W FUN12P39730 1002 aaKnown RBP3.58□□□□□ -1.84
UPF3YGR072W NDE1P40215 560 aa3.58□□□□□ -1.84
UPF3YGR072W UBP7P40453 1071 aa3.58□□□□□ -1.84
UPF3YGR072W YFL015CP43578 164 aa3.58□□□□□ -1.84
UPF3YGR072W ARC1P46672 376 aaKnown RBP3.58□□□□□ -1.84
UPF3YGR072W VPS4P52917 437 aa3.58□□□□□ -1.84
UPF3YGR072W LSC1P53598 329 aaKnown RBP3.58□□□□□ -1.84
UPF3YGR072W AAT1Q01802 451 aa3.58□□□□□ -1.84
UPF3YGR072W RPS15Q01855 142 aaKnown RBP3.58□□□□□ -1.84
UPF3YGR072W GTB1Q04924 702 aa3.58□□□□□ -1.84
UPF3YGR072W TMA16Q08687 178 aa3.58□□□□□ -1.84
UPF3YGR072W CRC1Q12289 327 aa3.58□□□□□ -1.84
UPF3YGR072W PCD1Q12524 340 aa3.58□□□□□ -1.84
UPF3YGR072W YLR111WQ12528 110 aa3.58□□□□□ -1.84
UPF3YGR072W CDC31P06704 161 aaKnown RBP3.57□□□□□ -1.84
UPF3YGR072W AAC3P18238 307 aa3.57□□□□□ -1.84
UPF3YGR072W CMK1P27466 446 aaKnown RBP3.57□□□□□ -1.84
UPF3YGR072W YBL029WP38201 376 aa3.57□□□□□ -1.84
UPF3YGR072W DJP1P40564 432 aa3.57□□□□□ -1.84
UPF3YGR072W UBX6P47049 396 aa3.57□□□□□ -1.84
UPF3YGR072W RDL1Q12305 139 aaKnown RBP3.57□□□□□ -1.84
UPF3YGR072W YOR111WQ99210 232 aa3.57□□□□□ -1.84
UPF3YGR072W RNR3P21672 869 aaKnown RBP3.56□□□□□ -1.84
UPF3YGR072W LRE1P25579 583 aaKnown RBP3.56□□□□□ -1.84
UPF3YGR072W PFK26P40433 827 aaKnown RBP3.56□□□□□ -1.84
UPF3YGR072W OPT1P40897 799 aa3.56□□□□□ -1.84
UPF3YGR072W LYS14P40971 790 aa3.56□□□□□ -1.84
UPF3YGR072W TAM41P53230 385 aa3.56□□□□□ -1.84
UPF3YGR072W COG2P53271 262 aa3.56□□□□□ -1.84
UPF3YGR072W RBG2P53295 368 aaKnown RBP3.56□□□□□ -1.84
UPF3YGR072W YNL058CP53947 316 aa3.56□□□□□ -1.84
UPF3YGR072W REG1Q00816 1014 aa3.56□□□□□ -1.84
UPF3YGR072W FCP1Q03254 732 aa3.56□□□□□ -1.84
UPF3YGR072W LYS21Q12122 440 aaKnown RBP3.56□□□□□ -1.84
UPF3YGR072W YPR089WO13585 888 aa3.55□□□□□ -1.84
UPF3YGR072W CHO2P05374 869 aaKnown RBP3.55□□□□□ -1.84
UPF3YGR072W SEC53P07283 254 aaKnown RBP3.55□□□□□ -1.84
UPF3YGR072W RPB2P08518 1224 aaKnown RBP3.55□□□□□ -1.84
UPF3YGR072W ERG8P24521 451 aa3.55□□□□□ -1.84
UPF3YGR072W MRP20P32387 263 aa3.55□□□□□ -1.84
UPF3YGR072W SAC6P32599 642 aaKnown RBP3.55□□□□□ -1.84
UPF3YGR072W GCS1P35197 352 aa3.55□□□□□ -1.84
UPF3YGR072W MPE1P35728 441 aaKnown RBP3.55□□□□□ -1.84
UPF3YGR072W KTR3P38130 404 aaPredicted RBP3.55□□□□□ -1.84
UPF3YGR072W YPT10P38146 199 aa3.55□□□□□ -1.84
UPF3YGR072W ARO9P38840 513 aaPredicted RBP3.55□□□□□ -1.84
UPF3YGR072W BUD16P39988 312 aa3.55□□□□□ -1.84
UPF3YGR072W ESL1P40456 1118 aa3.55□□□□□ -1.84
UPF3YGR072W SIP4P46954 829 aa3.55□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms