RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	YPL071C	Q02864	156 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	RMT2	Q03305	412 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	ATG26	Q06321	1198 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	OMS1	Q06668	471 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	TAF3	Q12297	353 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	ZRT2	Q12436	422 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	SEC39	Q12745	709 aa		4.85	□□□□□ -1.63
KIN28	YDL108W	FEN2	P25621	512 aa	Known RBP	4.84	□□□□□ -1.63
KIN28	YDL108W	GPI10	P30777	616 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	HIR2	P32480	875 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	DOA4	P32571	926 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	NPL6	P32832	435 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	BCS1	P32839	456 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	YPT7	P32939	208 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	PXL1	P36166	706 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	SRP68	P38687	599 aa	Known RBP	4.84	□□□□□ -1.63
KIN28	YDL108W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.63	not detected
KIN28	YDL108W	OSW5	P40219	148 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	SMK1	P41808	388 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	ROK1	P45818	564 aa	Predicted RBP	4.84	□□□□□ -1.63
KIN28	YDL108W	OGG1	P53397	376 aa	Predicted RBP	4.84	□□□□□ -1.63
KIN28	YDL108W	JJJ1	P53863	590 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	YNL144C	P53907	740 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	EOS1	P53938	366 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	ARP5	P53946	755 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	RGC1	Q06108	1083 aa	Known RBP	4.84	□□□□□ -1.63
KIN28	YDL108W	SPH1	Q06160	661 aa		4.84	□□□□□ -1.63
KIN28	YDL108W	KEL3	Q08979	651 aa	Predicted RBP	4.84	□□□□□ -1.63
KIN28	YDL108W	CWC2	Q12046	339 aa	Predicted RBP	4.84	□□□□□ -1.63
KIN28	YDL108W	CHS5	Q12114	671 aa	Known RBP	4.84	□□□□□ -1.63
KIN28	YDL108W	SIR3	P06701	978 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	MSS116	P15424	664 aa	Known RBP	4.83	□□□□□ -1.64
KIN28	YDL108W	CKA1	P15790	372 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	SPB1	P25582	841 aa	Predicted RBP	4.83	□□□□□ -1.64
KIN28	YDL108W	HSP104	P31539	908 aa	Known RBP	4.83	□□□□□ -1.64
KIN28	YDL108W	BMH2	P34730	273 aa	Known RBP	4.83	□□□□□ -1.64
KIN28	YDL108W	PHO11	P35842	467 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	ECM4	P36156	370 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	COS111	P38308	924 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	PHO12	P38693	467 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	YHL017W	P38745	532 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	PCL5	P38794	229 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	PKP1	P40530	394 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	ARF3	P40994	183 aa	RIP-Chip data	4.83	□□□□□ -1.64	RIP-Chip
KIN28	YDL108W	STU2	P46675	888 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	LIA1	P47120	325 aa	Known RBP	4.83	□□□□□ -1.64
KIN28	YDL108W	ART5	P53244	586 aa	Known RBP	4.83	□□□□□ -1.64
KIN28	YDL108W	SQS1	P53866	767 aa	Known RBP	4.83	□□□□□ -1.64
KIN28	YDL108W	SSL2	Q00578	843 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	TIM44	Q01852	431 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	RBA50	Q04418	439 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	SLK19	Q08581	821 aa	Known RBP	4.83	□□□□□ -1.64
KIN28	YDL108W	PDH1	Q12428	516 aa	Known RBP	4.83	□□□□□ -1.64
KIN28	YDL108W	ADF1	Q2V2Q1	113 aa		4.83	□□□□□ -1.64
KIN28	YDL108W	BRR1	Q99177	341 aa	Predicted RBP	4.83	□□□□□ -1.64
KIN28	YDL108W	YEL076C-A	P0CX16	216 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	YLR464W	P0CX17	216 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	GFA1	P14742	717 aa	Known RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	CLC1	P17891	233 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	PRE8	P23639	250 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	RRP43	P25359	394 aa	Predicted RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	PRE4	P30657	266 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	NTH1	P32356	751 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	ASF2	P32448	525 aa	Predicted RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	RPT3	P33298	428 aa	Known RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	LTV1	P34078	463 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	CUE2	P36075	443 aa	Known RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	APE3	P37302	537 aa	Known RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	CBR1	P38626	284 aa	Known RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	GND1	P38720	489 aa	Known RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	YEL076C	P39971	216 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	EAF5	P39995	279 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	TMN3	P40071	706 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	ATF1	P40353	525 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	IMA5	P40884	581 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	RFX1	P48743	811 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	YNR068C	P53754	272 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	CNM67	P53865	581 aa	Known RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	RPT6	Q01939	405 aa	Known RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	MTD1	Q02046	320 aa	Known RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	YPL107W	Q02873	248 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	MFB1	Q04922	465 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	MRD1	Q06106	887 aa	Known RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	YFT2	Q06676	274 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	ACF2	Q12168	779 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	YOL114C	Q12322	202 aa		4.82	□□□□□ -1.64
KIN28	YDL108W	PFK27	Q12471	397 aa	Predicted RBP	4.82	□□□□□ -1.64
KIN28	YDL108W	CET1	O13297	549 aa	Predicted RBP	4.81	□□□□□ -1.64
KIN28	YDL108W	MET17	P06106	444 aa		4.81	□□□□□ -1.64
KIN28	YDL108W	ABF1	P14164	731 aa		4.81	□□□□□ -1.64
KIN28	YDL108W	STE50	P25344	346 aa		4.81	□□□□□ -1.64
KIN28	YDL108W	PRD1	P25375	712 aa		4.81	□□□□□ -1.64
KIN28	YDL108W	SWH1	P35845	1188 aa		4.81	□□□□□ -1.64
KIN28	YDL108W	UBP11	P36026	717 aa		4.81	□□□□□ -1.64
KIN28	YDL108W	MRPL40	P36534	297 aa		4.81	□□□□□ -1.64
KIN28	YDL108W	PEX32	P38292	413 aa		4.81	□□□□□ -1.64
KIN28	YDL108W	CHS7	P38843	316 aa		4.81	□□□□□ -1.64
KIN28	YDL108W	LSM5	P40089	93 aa	Known RBP	4.81	□□□□□ -1.64
KIN28	YDL108W	PRM2	P40534	656 aa		4.81	□□□□□ -1.64
KIN28	YDL108W	YRB1	P41920	201 aa	Known RBP	4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms