RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	DON1	Q05610	365 aa		5.66	□□□□□ -1.5
NUP1	YOR098C	DNF2	Q12675	1612 aa		5.66	□□□□□ -1.5
NUP1	YOR098C	BIK1	P11709	440 aa		5.66	□□□□□ -1.5
NUP1	YOR098C	VPS17	P32913	551 aa		5.66	□□□□□ -1.5
NUP1	YOR098C	TYE7	P33122	291 aa	Predicted RBP	5.66	□□□□□ -1.5
NUP1	YOR098C	NIP100	P33420	868 aa		5.66	□□□□□ -1.5
NUP1	YOR098C	YBL029W	P38201	376 aa		5.66	□□□□□ -1.5
NUP1	YOR098C	PRE3	P38624	215 aa		5.66	□□□□□ -1.5
NUP1	YOR098C	ORC4	P54791	529 aa		5.66	□□□□□ -1.5
NUP1	YOR098C	RCL1	Q08096	367 aa	Predicted RBP	5.66	□□□□□ -1.5
NUP1	YOR098C	TY2A-LR1	P0C2J4	438 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	TY2A-F	P0CX61	438 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	TY2A-GR2	P0CX62	438 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	PET123	P17558	318 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	TY2A-C	P25383	438 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	ERV1	P27882	189 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	YHR033W	P38690	423 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	MUP3	P38734	546 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	5.65	□□□□□ -1.5	not detected
NUP1	YOR098C	TY2A-DR2	Q03483	438 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	RCO1	Q04779	684 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	HOS1	Q12214	470 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	PHM7	Q12252	991 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	TY2A-B	Q12260	438 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	TY2A-OR2	Q12293	438 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	TY2A-DR1	Q12392	438 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	TY2A-OR1	Q12439	438 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	TY2A-DR3	Q99303	438 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	NTE1	Q04958	1679 aa		5.65	□□□□□ -1.5
NUP1	YOR098C	CET1	O13297	549 aa	Predicted RBP	5.65	□□□□□ -1.51
NUP1	YOR098C	HNM1	P19807	563 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	CLB3	P24870	427 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	SSE1	P32589	693 aa	Known RBP	5.65	□□□□□ -1.51
NUP1	YOR098C	MTG2	P38860	518 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	MEF2	P39677	819 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	UBP9	P39967	754 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	PEF1	P53238	335 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	VBA4	Q04602	768 aa	Known RBP	5.65	□□□□□ -1.51
NUP1	YOR098C	YLL054C	Q12244	843 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	YCR051W	P25631	222 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	YSC84	P32793	468 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	HSM3	P38348	480 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	MRX1	P40050	688 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	PFK26	P40433	827 aa	Known RBP	5.65	□□□□□ -1.51
NUP1	YOR098C	TNA1	P53322	534 aa		5.65	□□□□□ -1.51
NUP1	YOR098C	BNI1	P41832	1953 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	MTC7	P32633	139 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	STU2	P46675	888 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	DUS1	P53759	423 aa	Known RBP	5.64	□□□□□ -1.51
NUP1	YOR098C	ARX1	Q03862	593 aa	Known RBP	5.64	□□□□□ -1.51
NUP1	YOR098C	ELG1	Q12050	791 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	RPN5	Q12250	445 aa	Known RBP	5.64	□□□□□ -1.51
NUP1	YOR098C	TRM3	Q07527	1436 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	DBP3	P20447	523 aa	Known RBP	5.64	□□□□□ -1.51
NUP1	YOR098C	CWH43	P25618	953 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	YEL043W	P32618	956 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	IST3	P40565	148 aa	Predicted RBP	5.64	□□□□□ -1.51
NUP1	YOR098C	TEL2	P53038	688 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	PUS2	P53167	370 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	ASM4	Q05166	528 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	HRK1	Q08732	759 aa	Known RBP	5.64	□□□□□ -1.51
NUP1	YOR098C	RIM20	Q12033	661 aa		5.64	□□□□□ -1.51
NUP1	YOR098C	CAF20	P12962	161 aa	Known RBP	5.63	□□□□□ -1.51
NUP1	YOR098C	RPC82	P32349	654 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	MIC60	P36112	540 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	ECM21	P38167	1117 aa	Known RBP	5.63	□□□□□ -1.51
NUP1	YOR098C	GIP2	P40036	548 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	RGI2	P40188	164 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	RRT14	P40470	206 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	YIR007W	P40566	764 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	ROK1	P45818	564 aa	Predicted RBP	5.63	□□□□□ -1.51
NUP1	YOR098C	SHE4	P51534	789 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	ARV1	Q06541	321 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	RIX7	Q07844	837 aa	Known RBP	5.63	□□□□□ -1.51
NUP1	YOR098C	YOR093C	Q12275	1648 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	APN2	P38207	520 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	TAF4	P50105	388 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	GLO1	P50107	326 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	CSL4	P53859	292 aa	Predicted RBP	5.63	□□□□□ -1.51
NUP1	YOR098C	RRN5	Q02983	363 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	SSL1	Q04673	461 aa	Predicted RBP	5.63	□□□□□ -1.51
NUP1	YOR098C	ROY1	Q04847	553 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	SUL2	Q12325	893 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	RPO21	P04050	1733 aa	Known RBP	5.63	□□□□□ -1.51
NUP1	YOR098C	TRK2	P28584	889 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	MET28	P40573	187 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	MKT1	P40850	830 aa	Known RBP	5.63	□□□□□ -1.51
NUP1	YOR098C	LAM5	P43560	674 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	SDH1	Q00711	640 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	TOF2	Q02208	771 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	VTC3	Q02725	835 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	EFR3	Q03653	782 aa	Known RBP	5.63	□□□□□ -1.51
NUP1	YOR098C	OSW2	Q12202	724 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	AFI1	Q99222	893 aa		5.63	□□□□□ -1.51
NUP1	YOR098C	DOP1	Q03921	1698 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	PDR11	P40550	1411 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	CPR2	P23285	205 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	ERG8	P24521	451 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	ALY1	P36117	915 aa		5.62	□□□□□ -1.51
NUP1	YOR098C	VMA13	P41807	478 aa	Known RBP	5.62	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 11.3 ms