RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	FUM1	P08417	488 aa	Known RBP	0.96	□□□□□ -2.26
RKR1	YMR247C	MSM1	P22438	575 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	PHO3	P24031	467 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	RER1	P25560	188 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	SNC1	P31109	117 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	RAD16	P31244	790 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	RPN2	P32565	945 aa	Known RBP	0.96	□□□□□ -2.26
RKR1	YMR247C	EMP70	P32802	667 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	SER1	P33330	395 aa	Known RBP	0.96	□□□□□ -2.26
RKR1	YMR247C	OCT1	P35999	772 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	MRPL7	P36519	292 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	BZZ1	P38822	633 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	HXT6	P39003	570 aa	Known RBP	0.96	□□□□□ -2.26
RKR1	YMR247C	HXT7	P39004	570 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	SAP185	P40856	1058 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	YJR096W	P47137	282 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	SGM1	P47166	707 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	AAD10	P47182	288 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	ASK10	P48361	1146 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	MDR1	P53258	950 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	MFM1	Q02783	413 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	LRS4	Q04087	347 aa	Known RBP	0.96	□□□□□ -2.26
RKR1	YMR247C	ARP10	Q04549	284 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	NDE2	Q07500	545 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	AFT2	Q08957	416 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	APL4	Q12028	832 aa		0.96	□□□□□ -2.26
RKR1	YMR247C	MRH1	Q12117	320 aa	Predicted RBP	0.96	□□□□□ -2.26
RKR1	YMR247C	RVB2	Q12464	471 aa	Known RBP	0.96	□□□□□ -2.26
RKR1	YMR247C	IMG2	P25642	146 aa	Predicted RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	SIP1	P32578	815 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	LHS1	P36016	881 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	MIA40	P36046	403 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	YPK3	P38070	525 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	YBR284W	P38150	797 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	YMR124W	P39523	943 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	FMP10	P40098	244 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	IRC8	P47046	822 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	YGL039W	P53183	348 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	BRE5	P53741	515 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	YNL018C	P53976	612 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	TRS31	Q03337	283 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	YHM2	Q04013	314 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	ECM16	Q04217	1267 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	THI3	Q07471	609 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	SGT1	Q08446	395 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	PPT2	Q12036	173 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	PGI1	P12709	554 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	AIM17	P23180	465 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	ERG6	P25087	383 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	BUD5	P25300	642 aa	Predicted RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	MSS1	P32559	526 aa	Predicted RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	FRD1	P32614	470 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	NPL6	P32832	435 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	SOF1	P33750	489 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	SFB3	P38810	929 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	LYS9	P38999	446 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	VTC2	P43585	828 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	STR3	P53101	465 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	PEX14	P53112	341 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	MRPL13	Q02204	264 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	SPC19	Q03954	165 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	VPS74	Q06385	345 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	HXK2	P04807	486 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	PET122	P10355	254 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	STE12	P13574	688 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	IME1	P21190	360 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	PWP1	P21304	576 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	CLB2	P24869	491 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	OCA4	P25366	362 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	YCL049C	P25577	312 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	LAC1	P28496	418 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	SRB5	P32585	307 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	MRS6	P32864	603 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	RRN3	P36070	627 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	YIL077C	P40508	320 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	MKT1	P40850	830 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	LSC1	P53598	329 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	SNF12	P53628	566 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	BUD17	P53727	317 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	IBD2	P53892	351 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	WAR1	Q03631	944 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	TRS130	Q03660	1102 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	SSL1	Q04673	461 aa	Predicted RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	STP4	Q07351	490 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	ISA1	Q07821	250 aa	Predicted RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	IRC13	Q08630	104 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	YRM1	Q12340	786 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	NUP188	P52593	1655 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	SEM1	O94742	89 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	PHO5	P00635	467 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	0.95	□□□□□ -2.26	not detected
RKR1	YMR247C	ATR1	P13090	542 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	STE4	P18851	423 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	COQ3	P27680	312 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	PPS1	P38148	807 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	OTU2	P38747	307 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	PMT6	P42934	759 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	CCT7	P42943	550 aa	Known RBP	0.95	□□□□□ -2.26
RKR1	YMR247C	YJL107C	P42947	387 aa		0.95	□□□□□ -2.26
RKR1	YMR247C	YJR142W	P47173	342 aa		0.95	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 72.3 ms