RNA–Protein interactions for RNA: YIL084C

SDS3, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene SDS3, Length 984 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SDS3	YIL084C	RPN13	O13563	156 aa		4.66	□□□□□ -1.66
SDS3	YIL084C	BET2	P20133	325 aa		4.66	□□□□□ -1.66
SDS3	YIL084C	LOT5	P34234	306 aa		4.66	□□□□□ -1.66
SDS3	YIL084C	RRP8	P38961	392 aa	Known RBP	4.66	□□□□□ -1.66
SDS3	YIL084C	VPS27	P40343	622 aa	Known RBP	4.66	□□□□□ -1.66
SDS3	YIL084C	YIL166C	P40445	542 aa		4.66	□□□□□ -1.66
SDS3	YIL084C	YGR117C	P53270	476 aa		4.66	□□□□□ -1.66
SDS3	YIL084C	YVH1	Q02256	364 aa	Known RBP	4.66	□□□□□ -1.66
SDS3	YIL084C	UBP16	Q02863	499 aa		4.66	□□□□□ -1.66
SDS3	YIL084C	YDL073W	Q07454	984 aa		4.66	□□□□□ -1.66
SDS3	YIL084C	CRD1	Q07560	283 aa		4.66	□□□□□ -1.66
SDS3	YIL084C	PHO81	P17442	1178 aa		4.65	□□□□□ -1.67
SDS3	YIL084C	STE4	P18851	423 aa		4.65	□□□□□ -1.67
SDS3	YIL084C	MUP3	P38734	546 aa		4.65	□□□□□ -1.67
SDS3	YIL084C	VFA1	P40080	203 aa		4.65	□□□□□ -1.67
SDS3	YIL084C	QRI7	P43122	407 aa		4.65	□□□□□ -1.67
SDS3	YIL084C	BUD17	P53727	317 aa		4.65	□□□□□ -1.67
SDS3	YIL084C	UBX4	P54730	416 aa		4.65	□□□□□ -1.67
SDS3	YIL084C	TAP42	Q04372	366 aa		4.65	□□□□□ -1.67
SDS3	YIL084C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
SDS3	YIL084C	VPS13	Q07878	3144 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	CBP1	P07252	654 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	VPS34	P22543	875 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	SPO11	P23179	398 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	MSH1	P25846	959 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	CNE1	P27825	502 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	CCL1	P37366	393 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	YMC2	P38087	329 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	IMA5	P40884	581 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	MAD3	P47074	515 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	MDG1	P53885	366 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	APM1	Q00776	475 aa	Predicted RBP	4.64	□□□□□ -1.67
SDS3	YIL084C	VPS64	Q03944	604 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	HOF1	Q05080	669 aa		4.64	□□□□□ -1.67
SDS3	YIL084C	MSS18	P08593	268 aa		4.63	□□□□□ -1.67
SDS3	YIL084C	STE12	P13574	688 aa		4.63	□□□□□ -1.67
SDS3	YIL084C	APM3	P38153	483 aa		4.63	□□□□□ -1.67
SDS3	YIL084C	YHL041W	P38730	149 aa		4.63	□□□□□ -1.67
SDS3	YIL084C	MIT1	P40002	666 aa		4.63	□□□□□ -1.67
SDS3	YIL084C	IDS2	P46958	469 aa		4.63	□□□□□ -1.67
SDS3	YIL084C	ATG36	P46983	293 aa		4.63	□□□□□ -1.67
SDS3	YIL084C	USA1	Q03714	838 aa		4.63	□□□□□ -1.67
SDS3	YIL084C	VMS1	Q04311	632 aa	Known RBP	4.63	□□□□□ -1.67
SDS3	YIL084C	GFD1	Q04839	188 aa	Known RBP	4.63	□□□□□ -1.67
SDS3	YIL084C	DIB1	Q06819	143 aa	Predicted RBP	4.63	□□□□□ -1.67
SDS3	YIL084C	BRE1	Q07457	700 aa	Known RBP	4.63	□□□□□ -1.67
SDS3	YIL084C	AAD4	Q07747	329 aa		4.63	□□□□□ -1.67
SDS3	YIL084C	TAO3	P40468	2376 aa		4.63	□□□□□ -1.67
SDS3	YIL084C	PHO5	P00635	467 aa		4.62	□□□□□ -1.67
SDS3	YIL084C	TPK2	P06245	380 aa		4.62	□□□□□ -1.67
SDS3	YIL084C	PIF1	P07271	859 aa		4.62	□□□□□ -1.67
SDS3	YIL084C	PGI1	P12709	554 aa	Known RBP	4.62	□□□□□ -1.67
SDS3	YIL084C	APE3	P37302	537 aa	Known RBP	4.62	□□□□□ -1.67
SDS3	YIL084C	STB5	P38699	743 aa		4.62	□□□□□ -1.67
SDS3	YIL084C	PMC1	P38929	1173 aa	Predicted RBP	4.62	□□□□□ -1.67
SDS3	YIL084C	YEL020C	P39994	560 aa		4.62	□□□□□ -1.67
SDS3	YIL084C	COS12	P53053	380 aa		4.62	□□□□□ -1.67
SDS3	YIL084C	RPS15	Q01855	142 aa	Known RBP	4.62	□□□□□ -1.67
SDS3	YIL084C	TRS31	Q03337	283 aa		4.62	□□□□□ -1.67
SDS3	YIL084C	SYF1	Q04048	859 aa	Predicted RBP	4.62	□□□□□ -1.67
SDS3	YIL084C	ENT2	Q05785	613 aa		4.62	□□□□□ -1.67
SDS3	YIL084C	SSP2	Q08646	371 aa		4.62	□□□□□ -1.67
SDS3	YIL084C	RRG1	Q12167	365 aa	Predicted RBP	4.62	□□□□□ -1.67
SDS3	YIL084C	ZPS1	Q12512	249 aa		4.62	□□□□□ -1.67
SDS3	YIL084C	RPA135	P22138	1203 aa	Known RBP	4.61	□□□□□ -1.67
SDS3	YIL084C	PEX2	P32800	271 aa		4.61	□□□□□ -1.67
SDS3	YIL084C	EMP70	P32802	667 aa		4.61	□□□□□ -1.67
SDS3	YIL084C	PTH2	P34222	208 aa		4.61	□□□□□ -1.67
SDS3	YIL084C	POL31	P46957	487 aa		4.61	□□□□□ -1.67
SDS3	YIL084C	ASN1	P49089	572 aa	Known RBP	4.61	□□□□□ -1.67
SDS3	YIL084C	COQ6	P53318	479 aa		4.61	□□□□□ -1.67
SDS3	YIL084C	CPR8	P53728	308 aa		4.61	□□□□□ -1.67
SDS3	YIL084C	ACS1	Q01574	713 aa		4.61	□□□□□ -1.67
SDS3	YIL084C	MIS1	P09440	975 aa	Known RBP	4.6	□□□□□ -1.67
SDS3	YIL084C	WHI2	P12611	486 aa		4.6	□□□□□ -1.67
SDS3	YIL084C	RPS7A	P26786	190 aa	Known RBP	4.6	□□□□□ -1.67
SDS3	YIL084C	SDH8	P38345	138 aa		4.6	□□□□□ -1.67
SDS3	YIL084C	LNP1	P38878	278 aa		4.6	□□□□□ -1.67
SDS3	YIL084C	STT3	P39007	718 aa	Known RBP	4.6	□□□□□ -1.67
SDS3	YIL084C	FAF1	P40546	346 aa	Predicted RBP	4.6	□□□□□ -1.67
SDS3	YIL084C	MRK1	P50873	501 aa		4.6	□□□□□ -1.67
SDS3	YIL084C	ZDS2	P54786	942 aa		4.6	□□□□□ -1.67
SDS3	YIL084C	ARA2	Q04212	335 aa		4.6	□□□□□ -1.67
SDS3	YIL084C	FLO11	P08640	1367 aa		4.6	□□□□□ -1.67
SDS3	YIL084C	CPA2	P03965	1118 aa	Known RBP	4.59	□□□□□ -1.67
SDS3	YIL084C	SEC18	P18759	758 aa	Known RBP	4.59	□□□□□ -1.67
SDS3	YIL084C	SIR1	P21691	654 aa		4.59	□□□□□ -1.67
SDS3	YIL084C	SAT4	P25333	603 aa	Known RBP	4.59	□□□□□ -1.67
SDS3	YIL084C	PAH1	P32567	862 aa		4.59	□□□□□ -1.67
SDS3	YIL084C	UGP1	P32861	499 aa	Known RBP	4.59	□□□□□ -1.67
SDS3	YIL084C	ACA1	P39970	489 aa		4.59	□□□□□ -1.67
SDS3	YIL084C	RRT6	P53117	311 aa	Predicted RBP	4.59	□□□□□ -1.67
SDS3	YIL084C	MOT3	P54785	490 aa	Known RBP	4.59	□□□□□ -1.67
SDS3	YIL084C	RBA50	Q04418	439 aa		4.59	□□□□□ -1.67
SDS3	YIL084C	CRF1	Q04930	467 aa		4.59	□□□□□ -1.67
SDS3	YIL084C	IWR1	Q07532	353 aa	Predicted RBP	4.59	□□□□□ -1.67
SDS3	YIL084C	CRT10	Q08226	957 aa		4.59	□□□□□ -1.67
SDS3	YIL084C	SUT2	Q12286	268 aa		4.59	□□□□□ -1.67
SDS3	YIL084C	YPK1	P12688	680 aa	Known RBP	4.58	□□□□□ -1.68
SDS3	YIL084C	POL3	P15436	1097 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 30.9 ms