RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Ighv2-5A0A0A6YY69 116 aa10.76□□□□□ -0.69
Ccdc88b-201ENSMUST00000113440 Myo15aQ9QZZ4 3511 aa10.76□□□□□ -0.69
Ccdc88b-201ENSMUST00000113440 Krtap16-1A2A5X5 502 aa10.75□□□□□ -0.69
Ccdc88b-201ENSMUST00000113440 AI854703Q8BIN3 203 aa10.75□□□□□ -0.69
Ccdc88b-201ENSMUST00000113440 Coa6Q8BGD8 79 aa10.73□□□□□ -0.69
Ccdc88b-201ENSMUST00000113440 Gm10267M0QWD8 85 aa10.73□□□□□ -0.69
Ccdc88b-201ENSMUST00000113440 Spint4Q9D263 159 aa10.72□□□□□ -0.69
Ccdc88b-201ENSMUST00000113440 Igkv8-28A0A0G2JE47 121 aa10.72□□□□□ -0.69
Ccdc88b-201ENSMUST00000113440 Gm10772F7AIG4 85 aa10.7□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 P01819 144 aa10.69□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 Lypd5Q9D7Z7 256 aa10.68□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 Ighv2-2A0A075B5P8 116 aa10.67□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 P01821 116 aa10.67□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 Dchs2A0A0A6YW72 3346 aa10.66□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 Gm10197F6QEY5 67 aa10.66□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 Adgrg4B7ZCC9 3073 aa10.65□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 Eif4ebp3Q80VV3 101 aa10.65□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 Igkv3-7A0A0G2JE31 119 aa10.65□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 A730009L09RikA0A1B0GS82 72 aa10.65□□□□□ -0.7
Ccdc88b-201ENSMUST00000113440 Wfdc6bF6ULY1 148 aa10.64□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Q9DAA7 145 aa10.64□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Dchs1E9PVD3 3291 aa10.64□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 CicQ924A2 2510 aa10.63□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Gm3233E9Q2H5 230 aa10.63□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 A530084C06RikQ3UTW2 186 aa10.63□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Gm16181B0V2H2 73 aa10.63□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 AtrQ9JKK8 2635 aa10.63□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Cd164Q9R0L9 197 aa10.62□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 7530416G11RikJ3QJX6 159 aa10.62□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Chchd10Q7TNL9 138 aa10.62□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Fam19a3Q7TPG6 132 aa10.62□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Igkv8-27A0A0G2JF28 120 aa10.62□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Defb38Q7TNV7 63 aa10.61□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Gm28230A0A0A0MQ91 144 aa10.6□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Ly6g6cQ9Z1Q4 126 aa10.6□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 E130208F15RikQ3UPV3 143 aa10.59□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Defb37Q7TMD2 62 aa10.59□□□□□ -0.71
Ccdc88b-201ENSMUST00000113440 Snhg11Q4G0K9 87 aa10.58□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Gm10308Q9CVR5 141 aa10.58□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Msrb1Q9JLC3 116 aa10.58□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 SpegQ62407 3262 aa10.58□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Adm2Q7TNK8 150 aa10.58□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 NipblQ6KCD5 2798 aaKnown RBP10.58□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Cox6a2P43023 97 aa10.57□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 RelnQ60841 3461 aa10.57□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Gm11565A2A4M7 156 aa10.57□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Mrpl34Q99N91 92 aa10.56□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 NbeaQ9EPN1 2936 aa10.55□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Usp24B1AY13 2617 aaKnown RBP10.55□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 2310034G01RikA0A286YDL3 209 aa10.55□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 4930519P11RikQ9CUJ8 166 aa10.55□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Muc2Q80Z19 2680 aa10.54□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Igkv8-19A0A0G2JFN8 121 aa10.53□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 6430550D23RikE9Q1X6 194 aa10.53□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Psors1c2Q80ZC9 134 aa10.53□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Gm9903Q8C9Y8 129 aa10.53□□□□□ -0.72
Ccdc88b-201ENSMUST00000113440 Dmbt1Q60997 2085 aa10.52□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Reg3aO09037 175 aa10.52□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 1600014C23RikQ9DAX4 101 aa10.52□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Itpr3P70227 2670 aa10.51□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Notch1Q01705 2531 aa10.51□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Defb50Q6TU36 73 aa10.51□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Gm11627A6PWP4 55 aa10.51□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Wfdc17Q5SSJ1 76 aa10.51□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Wfdc3Q14AE4 130 aa10.5□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Elof1P60003 83 aa10.5□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Gm10160F6Y577 67 aa10.49□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 DspE9Q557 2883 aaKnown RBP10.49□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Gm28374F6SG70 93 aa10.48□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Spata3Q9D9T6 193 aa10.47□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Bean1Q9EQG5 255 aa10.47□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Krtap11-1E9Q2E9 183 aa10.47□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Limd2Q8BGB5 128 aa10.46□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Chd6A3KFM7 2711 aa10.46□□□□□ -0.73
Ccdc88b-201ENSMUST00000113440 Dmac1Q9CQ00 111 aa10.44□□□□□ -0.74
Ccdc88b-201ENSMUST00000113440 Gm21886J3QJU9 214 aa10.44□□□□□ -0.74
Ccdc88b-201ENSMUST00000113440 Zzef1Q5SSH7 2924 aa10.43□□□□□ -0.74
Ccdc88b-201ENSMUST00000113440 Gm17689B3GLJ4 109 aa10.41□□□□□ -0.74
Ccdc88b-201ENSMUST00000113440 1700018G05RikA0A1B0GSI2 66 aa10.41□□□□□ -0.74
Ccdc88b-201ENSMUST00000113440 Gm10770F7D043 238 aa10.41□□□□□ -0.74
Ccdc88b-201ENSMUST00000113440 Cdc42se1Q8BHL7 80 aa10.41□□□□□ -0.74
Ccdc88b-201ENSMUST00000113440 Stab1Q8R4Y4 2571 aa10.41□□□□□ -0.74
Ccdc88b-201ENSMUST00000113440 Gm44790A0A0N4SV91 103 aa10.41□□□□□ -0.74
Ccdc88b-201ENSMUST00000113440 AplnQ9R0R4 77 aa10.39□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Ubr5Q80TP3 2792 aa10.39□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Vps13cQ8BX70 3748 aa10.38□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Sprr1bQ62267 153 aa10.37□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Gm17606F6ZL36 78 aa10.37□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Gm10837Q3UTT8 145 aa10.36□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Utp20Q5XG71 2788 aaKnown RBP10.36□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 C530025M09RikF6RGA8 229 aa10.36□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Akap9Q70FJ1 3797 aa10.36□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 1810062G17RikG3X8Y2 129 aa10.36□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Defb39Q70KL3 74 aa10.36□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Nsd1O88491 2588 aaKnown RBP10.35□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Defb11Q8R2I7 77 aa10.35□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 Fn1P11276 2477 aaKnown RBP10.34□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 FasnP19096 2504 aaKnown RBP10.34□□□□□ -0.75
Ccdc88b-201ENSMUST00000113440 AI606181Q8C7B9 129 aa10.33□□□□□ -0.76
Ccdc88b-201ENSMUST00000113440 Prol1E9PYQ4 312 aa10.32□□□□□ -0.76
Retrieved 100 of 22,080 RNA–protein pairs in 55.8 ms