RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Klk5Q9D140 293 aa11.52□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 1520401A03RikA0A0J9YVH6 598 aa11.52□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm10251J3QPM5 127 aa11.52□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Camk2n2Q78WH7 79 aa11.52□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm2916Q9D9B9 127 aa11.52□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Fhl2O70433 279 aa11.52□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm10542F6XDR3 90 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Defb2P82020 71 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Igkv1-35A0A0G2JDE5 120 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Mrpl52Q9D0Y8 121 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Psmb8P28063 276 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 B9d2Q3UK10 175 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Arhgap32Q811P8 2089 aa11.51□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ndufc1Q9CQY9 76 aa11.5□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ighv1-85A0A075B5Y6 117 aa11.5□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm17472A0A075B683 117 aa11.5□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ighv3-3A0A0A6YWL2 116 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 BikO70337 150 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Igkv8-18A0A0B4J1J3 123 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Trav13d-4A0A0G2JFX3 110 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ighv1-61P01749 117 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Abca12E9Q876 2595 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Cyyr1Q8VIH7 165 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Q9D8Q6 235 aa11.49□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ly6c2P0CW03 131 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 TrrapQ80YV3 2565 aaKnown RBP11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Timm17bQ9Z0V7 172 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Sh2d1aO88890 126 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Vpreb2P13373 142 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 CnfnQ6PCW6 111 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 TroQ6DIC6 2087 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm8439G3UWA7 96 aa11.48□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Trav13n-2A0A0G2JF93 110 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 AtmQ62388 3066 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Higd2aQ9CQJ1 106 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Igkv2-109A0A075B5K6 120 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Trav13-4-dv7A0A075B6C2 110 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Tcl1b3P56842 122 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Bod1lE9Q6J5 3032 aa11.47□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 PrlhG3UWC3 86 aa11.46□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Ranbp2Q9ERU9 3053 aaKnown RBP11.46□□□□□ -0.57
Ccdc88b-201ENSMUST00000113440 Gm37389A0A0A6YW05 95 aa11.46□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Trav13-2A0A075B649 110 aa11.46□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 SbsponQ3UPR9 264 aa11.45□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Ighv1-66A0A075B5X5 117 aa11.45□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Ighv2-6-8A0A0A6YWY9 116 aa11.45□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Prr9Q8BV84 116 aa11.45□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Trav13-1A0A075B644 110 aa11.44□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Gm10735Q3US96 136 aa11.44□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Ly6gP35461 111 aa11.44□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Pou2af1Q64693 256 aa11.43□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Gm17577J3QNF7 156 aa11.43□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Polr2kQ63871 58 aa11.43□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Klk12B2RVZ0 247 aa11.43□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Naa38Q9D2U5 125 aa11.43□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 MtorQ9JLN9 2549 aa11.42□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 B230359F08RikA0A0B4J1K3 109 aa11.42□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Igkv1-88A0A140T8N1 120 aa11.42□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 CrygdP04342 174 aa11.41□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Igkv3-5A0A140T8M6 119 aa11.41□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Gm10490F6VBM2 120 aa11.4□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Fgfbp3Q1HCM0 245 aa11.4□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Ly6hQ9WUC3 139 aa11.4□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Rpl39lQ9CQD0 51 aa11.4□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Hivep3A2A884 2348 aa11.4□□□□□ -0.58
Ccdc88b-201ENSMUST00000113440 Vpreb3D3Z6J4 130 aa11.4□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 P01729 129 aa11.4□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Vpreb1P13372 142 aa11.39□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 1700012A03RikQ9DAF1 130 aa11.39□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Trav9n-4A0A075B631 113 aa11.38□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Sox16Q62247 57 aa11.38□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ube2aQ9Z255 152 aa11.38□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ighv1-63A0A075B5X2 117 aa11.38□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Reg3bP35230 175 aa11.38□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Setd2E9Q5F9 2537 aa11.37□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 A930009A15RikG3UYI6 118 aa11.37□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ube2d1P61080 147 aaKnown RBP11.37□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Gm3618D3Z4P5 127 aa11.37□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Q9DAB9 146 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Gm10401E9Q3K6 71 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Gm9767G3X930 207 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Rpl18aP62717 176 aaKnown RBP11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Serp2Q6TAW2 65 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Tfpi2O35536 230 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ighv1-72P01751 139 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Smrp1Q2MH31 260 aa11.36□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Esm1Q9QYY7 184 aa11.35□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 C2cd3Q52KB6 2323 aa11.35□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 4930564D02RikQ9D4S4 103 aa11.35□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ube2d4D3YUH6 135 aa11.35□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Hivep2Q3UHF7 2430 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 CenpwQ3URR0 86 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ube2d3P61079 147 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Ube2d2P62838 147 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 Klk9Q32M27 251 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 SrarpQ3ULG3 163 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 SvipQ3UZP4 77 aa11.34□□□□□ -0.59
Ccdc88b-201ENSMUST00000113440 SptssbQ925E8 76 aa11.33□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Ufsp1Q9CZP0 217 aa11.33□□□□□ -0.6
Ccdc88b-201ENSMUST00000113440 Igkv3-10A0A0G2JGN0 119 aa11.32□□□□□ -0.6
Retrieved 100 of 22,080 RNA–protein pairs in 73.4 ms