RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W NDD1Q08887 554 aa4.09□□□□□ -1.75
UBP8YMR223W FAP7Q12055 197 aaPredicted RBP4.09□□□□□ -1.75
UBP8YMR223W LYS21Q12122 440 aaKnown RBP4.09□□□□□ -1.75
UBP8YMR223W KGD2P19262 463 aaPredicted RBP4.08□□□□□ -1.76
UBP8YMR223W DUG1P43616 481 aaKnown RBP4.08□□□□□ -1.76
UBP8YMR223W YPR027CQ12079 277 aa4.08□□□□□ -1.76
UBP8YMR223W LCB4Q12246 624 aa4.08□□□□□ -1.76
UBP8YMR223W PRP45P28004 379 aaPredicted RBP4.07□□□□□ -1.76
UBP8YMR223W YIL152WP40455 235 aa4.07□□□□□ -1.76
UBP8YMR223W PLM2Q04383 521 aa4.07□□□□□ -1.76
UBP8YMR223W GRS2Q06817 618 aa4.07□□□□□ -1.76
UBP8YMR223W YOR378WQ08902 515 aa4.07□□□□□ -1.76
UBP8YMR223W PUF2Q12221 1075 aaKnown RBP RIP-Chip data4.07□□□□□ -1.76 RIP-Chip
UBP8YMR223W AMD2P22580 549 aa4.06□□□□□ -1.76
UBP8YMR223W RRP43P25359 394 aaPredicted RBP4.06□□□□□ -1.76
UBP8YMR223W SER1P33330 395 aaKnown RBP4.06□□□□□ -1.76
UBP8YMR223W YGR237CP50089 785 aa4.06□□□□□ -1.76
UBP8YMR223W MNT2P53059 558 aa4.06□□□□□ -1.76
UBP8YMR223W RAD34Q06665 692 aa4.06□□□□□ -1.76
UBP8YMR223W RMP1Q12530 201 aa4.06□□□□□ -1.76
UBP8YMR223W Q0010Q9ZZX9 128 aa4.06□□□□□ -1.76
UBP8YMR223W ARG1P22768 420 aa4.05□□□□□ -1.76
UBP8YMR223W GND1P38720 489 aaKnown RBP4.05□□□□□ -1.76
UBP8YMR223W SSP120P39931 234 aaKnown RBP4.05□□□□□ -1.76
UBP8YMR223W GPP2P40106 250 aaKnown RBP4.05□□□□□ -1.76
UBP8YMR223W YFR016CP43597 1233 aaKnown RBP4.05□□□□□ -1.76
UBP8YMR223W AAT1Q01802 451 aa4.05□□□□□ -1.76
UBP8YMR223W UBP16Q02863 499 aa4.05□□□□□ -1.76
UBP8YMR223W DSE3Q08729 430 aa4.05□□□□□ -1.76
UBP8YMR223W RTT107P38850 1070 aa4.04□□□□□ -1.76
UBP8YMR223W VPS8P39702 1274 aa4.04□□□□□ -1.76
UBP8YMR223W GIS2P53849 153 aaKnown RBP RIP-Chip data4.04□□□□□ -1.76not detected
UBP8YMR223W YML119WQ03208 357 aa4.04□□□□□ -1.76
UBP8YMR223W ARA2Q04212 335 aa4.04□□□□□ -1.76
UBP8YMR223W YOR389WQ08912 624 aa4.04□□□□□ -1.76
UBP8YMR223W HOS1Q12214 470 aa4.04□□□□□ -1.76
UBP8YMR223W RTC1Q08281 1341 aa4.04□□□□□ -1.76
UBP8YMR223W GAL4P04386 881 aa4.04□□□□□ -1.76
UBP8YMR223W PET309P32522 965 aaPredicted RBP4.04□□□□□ -1.76
UBP8YMR223W TOM20P35180 183 aa4.04□□□□□ -1.76
UBP8YMR223W SCO2P38072 301 aa4.04□□□□□ -1.76
UBP8YMR223W SAP1P39955 897 aaKnown RBP4.04□□□□□ -1.76
UBP8YMR223W YDL242WQ07746 117 aa4.04□□□□□ -1.76
UBP8YMR223W CNA1P23287 553 aa4.03□□□□□ -1.76
UBP8YMR223W YCR043CP25361 127 aa4.03□□□□□ -1.76
UBP8YMR223W LNP1P38878 278 aa4.03□□□□□ -1.76
UBP8YMR223W TES1P41903 349 aaKnown RBP4.03□□□□□ -1.76
UBP8YMR223W IDS2P46958 469 aa4.03□□□□□ -1.76
UBP8YMR223W YJR142WP47173 342 aa4.03□□□□□ -1.76
UBP8YMR223W YAT1P80235 687 aa4.03□□□□□ -1.76
UBP8YMR223W MLH2Q07980 695 aa4.03□□□□□ -1.76
UBP8YMR223W YPL191CQ08930 360 aa4.03□□□□□ -1.76
UBP8YMR223W YGR161W-CQ3E744 92 aa4.03□□□□□ -1.76
UBP8YMR223W URA3P03962 267 aa4.02□□□□□ -1.77
UBP8YMR223W ARC40P38328 384 aaKnown RBP4.02□□□□□ -1.77
UBP8YMR223W FPR3P38911 411 aaKnown RBP4.02□□□□□ -1.77
UBP8YMR223W YJL107CP42947 387 aa4.02□□□□□ -1.77
UBP8YMR223W CWC2Q12046 339 aaPredicted RBP4.02□□□□□ -1.77
UBP8YMR223W PHO2P07269 559 aa4.01□□□□□ -1.77
UBP8YMR223W SES1P07284 462 aaKnown RBP4.01□□□□□ -1.77
UBP8YMR223W DAL3P32459 195 aa4.01□□□□□ -1.77
UBP8YMR223W MAD2P40958 196 aa4.01□□□□□ -1.77
UBP8YMR223W GSM1P42950 618 aa4.01□□□□□ -1.77
UBP8YMR223W ORC5P50874 479 aa4.01□□□□□ -1.77
UBP8YMR223W YTH1Q06102 208 aaPredicted RBP4.01□□□□□ -1.77
UBP8YMR223W RRI1Q12468 440 aa4.01□□□□□ -1.77
UBP8YMR223W SEC18P18759 758 aaKnown RBP4□□□□□ -1.77
UBP8YMR223W YCR061WP25639 631 aa4□□□□□ -1.77
UBP8YMR223W VBA2P38358 474 aaKnown RBP4□□□□□ -1.77
UBP8YMR223W HOL1P53389 586 aa4□□□□□ -1.77
UBP8YMR223W YNR071CP53757 342 aa4□□□□□ -1.77
UBP8YMR223W SCW10Q04951 389 aa4□□□□□ -1.77
UBP8YMR223W YLR281CQ05863 155 aa4□□□□□ -1.77
UBP8YMR223W DIN7Q12086 430 aa4□□□□□ -1.77
UBP8YMR223W YER175W-AQ8TGU4 54 aa4□□□□□ -1.77
UBP8YMR223W ARN1P38731 627 aa3.99□□□□□ -1.77
UBP8YMR223W ERV46P39727 415 aa3.99□□□□□ -1.77
UBP8YMR223W STL1P39932 569 aa3.99□□□□□ -1.77
UBP8YMR223W EMP65P40085 556 aa3.99□□□□□ -1.77
UBP8YMR223W NIT2P47016 307 aa3.99□□□□□ -1.77
UBP8YMR223W YPT11P48559 417 aa3.99□□□□□ -1.77
UBP8YMR223W SLD3P53135 668 aa3.99□□□□□ -1.77
UBP8YMR223W SPC105P53148 917 aa3.99□□□□□ -1.77
UBP8YMR223W YML053CQ04978 212 aa3.99□□□□□ -1.77
UBP8YMR223W TRI1Q05024 226 aa3.99□□□□□ -1.77
UBP8YMR223W PFA4Q12006 378 aa3.99□□□□□ -1.77
UBP8YMR223W STB5P38699 743 aa3.98□□□□□ -1.77
UBP8YMR223W NAB3P38996 802 aaKnown RBP RIP-Chip data3.98□□□□□ -1.77not detected
UBP8YMR223W MET30P39014 640 aa3.98□□□□□ -1.77
UBP8YMR223W ECM22Q05958 814 aaPredicted RBP3.98□□□□□ -1.77
UBP8YMR223W NRT1Q08485 598 aa3.98□□□□□ -1.77
UBP8YMR223W RTK1Q12100 620 aaPredicted RBP3.98□□□□□ -1.77
UBP8YMR223W YFL068WP0CX99 160 aa3.97□□□□□ -1.77
UBP8YMR223W YLL066W-AP0CY00 160 aa3.97□□□□□ -1.77
UBP8YMR223W YLL067W-AP0CY01 160 aa3.97□□□□□ -1.77
UBP8YMR223W COX11P19516 300 aaKnown RBP3.97□□□□□ -1.77
UBP8YMR223W ARO9P38840 513 aaPredicted RBP3.97□□□□□ -1.77
UBP8YMR223W EAF5P39995 279 aa3.97□□□□□ -1.77
UBP8YMR223W YIL169CP40442 995 aa3.97□□□□□ -1.77
UBP8YMR223W YGL260WP53056 76 aa3.97□□□□□ -1.77
Retrieved 100 of 5,963 RNA–protein pairs in 9.6 ms