RNA–Protein interactions for RNA: YHR109W

CTM1, Transcript of Cytochrome c lysine methyltransferase, yeast

Gene CTM1, Length 1,758 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTM1	YHR109W	SOD2	P00447	233 aa		4.04	□□□□□ -1.76
CTM1	YHR109W	RPL19A	P0CX82	189 aa	Known RBP	4.04	□□□□□ -1.76
CTM1	YHR109W	RPL19B	P0CX83	189 aa	Predicted RBP	4.04	□□□□□ -1.76
CTM1	YHR109W	CDC24	P11433	854 aa	Predicted RBP	4.04	□□□□□ -1.76
CTM1	YHR109W	RED1	P14291	827 aa		4.04	□□□□□ -1.76
CTM1	YHR109W	YCK1	P23291	538 aa		4.04	□□□□□ -1.76
CTM1	YHR109W	PRP45	P28004	379 aa	Predicted RBP	4.04	□□□□□ -1.76
CTM1	YHR109W	HIS7	P33734	552 aa	Known RBP	4.04	□□□□□ -1.76
CTM1	YHR109W	LST4	P34239	828 aa		4.04	□□□□□ -1.76
CTM1	YHR109W	BYE1	P36106	594 aa		4.04	□□□□□ -1.76
CTM1	YHR109W	KTR3	P38130	404 aa	Predicted RBP	4.04	□□□□□ -1.76
CTM1	YHR109W	CSL4	P53859	292 aa	Predicted RBP	4.04	□□□□□ -1.76
CTM1	YHR109W	RPT6	Q01939	405 aa	Known RBP	4.04	□□□□□ -1.76
CTM1	YHR109W	NGL3	Q03210	505 aa		4.04	□□□□□ -1.76
CTM1	YHR109W	YMR155W	Q03795	547 aa		4.04	□□□□□ -1.76
CTM1	YHR109W	TMA10	Q06177	86 aa		4.04	□□□□□ -1.76
CTM1	YHR109W	IRC13	Q08630	104 aa		4.04	□□□□□ -1.76
CTM1	YHR109W	SEC53	P07283	254 aa	Known RBP	4.03	□□□□□ -1.76
CTM1	YHR109W	RPB2	P08518	1224 aa	Known RBP	4.03	□□□□□ -1.76
CTM1	YHR109W	CKA1	P15790	372 aa		4.03	□□□□□ -1.76
CTM1	YHR109W	PEP3	P27801	918 aa		4.03	□□□□□ -1.76
CTM1	YHR109W	ELF1	P36053	145 aa		4.03	□□□□□ -1.76
CTM1	YHR109W	CIR1	P42940	261 aa		4.03	□□□□□ -1.76
CTM1	YHR109W	MRX6	P48564	524 aa		4.03	□□□□□ -1.76
CTM1	YHR109W	AMA1	P50082	593 aa		4.03	□□□□□ -1.76
CTM1	YHR109W	YGR250C	P53316	781 aa	Known RBP	4.03	□□□□□ -1.76
CTM1	YHR109W	NBP2	Q12163	236 aa		4.03	□□□□□ -1.76
CTM1	YHR109W	CAF20	P12962	161 aa	Known RBP	4.02	□□□□□ -1.77
CTM1	YHR109W	ECM32	P32644	1121 aa	Known RBP	4.02	□□□□□ -1.77
CTM1	YHR109W	PXA2	P34230	853 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	ALY1	P36117	915 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	MRPL7	P36519	292 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	YHR097C	P38809	366 aa	Known RBP	4.02	□□□□□ -1.77
CTM1	YHR109W	ELO3	P40319	345 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	SKP2	P42843	763 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	ARC1	P46672	376 aa	Known RBP	4.02	□□□□□ -1.77
CTM1	YHR109W	VPS75	P53853	264 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	SXM1	Q04175	944 aa	Known RBP	4.02	□□□□□ -1.77
CTM1	YHR109W	DLT1	Q04216	342 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	YLR352W	Q06479	807 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	MLH3	Q12083	715 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	PGA3	Q12746	312 aa	Known RBP	4.02	□□□□□ -1.77
CTM1	YHR109W	GCN4	P03069	281 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	PRP28	P23394	588 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	EFT1	P32324	842 aa	Known RBP	4.02	□□□□□ -1.77
CTM1	YHR109W	PHO11	P35842	467 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	AIM3	P38266	947 aa	Known RBP	4.02	□□□□□ -1.77
CTM1	YHR109W	PHO12	P38693	467 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	JHD1	P40034	492 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	PFK26	P40433	827 aa	Known RBP	4.02	□□□□□ -1.77
CTM1	YHR109W	SPO22	P40511	975 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	UBC11	P52492	156 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	LCL3	P53153	274 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	ERO1	Q03103	563 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	FCP1	Q03254	732 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	IZH3	Q07959	543 aa		4.02	□□□□□ -1.77
CTM1	YHR109W	MET3	P08536	511 aa		4.01	□□□□□ -1.77
CTM1	YHR109W	URK1	P27515	501 aa		4.01	□□□□□ -1.77
CTM1	YHR109W	SAC6	P32599	642 aa	Known RBP	4.01	□□□□□ -1.77
CTM1	YHR109W	NOP4	P37838	685 aa	Known RBP	4.01	□□□□□ -1.77
CTM1	YHR109W	YBL029W	P38201	376 aa		4.01	□□□□□ -1.77
CTM1	YHR109W	ARF3	P40994	183 aa	RIP-Chip data	4.01	□□□□□ -1.77	RIP-Chip
CTM1	YHR109W	YNR061C	P53747	219 aa		4.01	□□□□□ -1.77
CTM1	YHR109W	SSL2	Q00578	843 aa		4.01	□□□□□ -1.77
CTM1	YHR109W	EFR3	Q03653	782 aa	Known RBP	4.01	□□□□□ -1.77
CTM1	YHR109W	CLU1	Q03690	1277 aa	Known RBP	4.01	□□□□□ -1.77
CTM1	YHR109W	RCO1	Q04779	684 aa		4.01	□□□□□ -1.77
CTM1	YHR109W	PSK2	Q08217	1101 aa		4.01	□□□□□ -1.77
CTM1	YHR109W	PUS1	Q12211	544 aa	Known RBP	4.01	□□□□□ -1.77
CTM1	YHR109W	TRP4	P07285	380 aa	Predicted RBP	4	□□□□□ -1.77
CTM1	YHR109W	RPC53	P25441	422 aa		4	□□□□□ -1.77
CTM1	YHR109W	SWC3	P31376	625 aa		4	□□□□□ -1.77
CTM1	YHR109W	ERG3	P32353	365 aa		4	□□□□□ -1.77
CTM1	YHR109W	YKL050C	P35736	922 aa		4	□□□□□ -1.77
CTM1	YHR109W	LSM5	P40089	93 aa	Known RBP	4	□□□□□ -1.77
CTM1	YHR109W	VPS4	P52917	437 aa		4	□□□□□ -1.77
CTM1	YHR109W	CTI6	Q08923	506 aa		4	□□□□□ -1.77
CTM1	YHR109W	SMC6	Q12749	1114 aa		4	□□□□□ -1.77
CTM1	YHR109W	YOR019W	Q99248	730 aa		4	□□□□□ -1.77
CTM1	YHR109W	VCX1	Q99385	411 aa		4	□□□□□ -1.77
CTM1	YHR109W	ROX1	P25042	368 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	POL4	P25615	582 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	YCR061W	P25639	631 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	FUB1	P25659	250 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	SRO77	P38163	1010 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	ARO9	P38840	513 aa	Predicted RBP	3.99	□□□□□ -1.77
CTM1	YHR109W	RTS1	P38903	757 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	AXL1	P40851	1208 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	ASE1	P50275	885 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	MTG1	Q03151	367 aa	Predicted RBP	3.99	□□□□□ -1.77
CTM1	YHR109W	RIX7	Q07844	837 aa	Known RBP	3.99	□□□□□ -1.77
CTM1	YHR109W	ENB1	Q08299	606 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	USV1	Q12132	391 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	ERG27	Q12452	347 aa	Known RBP	3.99	□□□□□ -1.77
CTM1	YHR109W	YKL033W-A	Q86ZR7	236 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	KAR3	P17119	729 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	THR1	P17423	357 aa	Known RBP	3.99	□□□□□ -1.77
CTM1	YHR109W	VPS34	P22543	875 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	PRE8	P23639	250 aa		3.99	□□□□□ -1.77
CTM1	YHR109W	NTH1	P32356	751 aa		3.99	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 26.4 ms