RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NPL4	YBR170C	YSA1	Q01976	231 aa		4.76	□□□□□ -1.65
NPL4	YBR170C	PUS9	Q12069	462 aa		4.76	□□□□□ -1.65
NPL4	YBR170C	PSD1	P39006	500 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	YJL193W	P39542	402 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	ZAP1	P47043	880 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	RFX1	P48743	811 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	YPL108W	Q02872	168 aa	Predicted RBP	4.75	□□□□□ -1.65
NPL4	YBR170C	RCO1	Q04779	684 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	YLR352W	Q06479	807 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	PGA3	Q12746	312 aa	Known RBP	4.75	□□□□□ -1.65
NPL4	YBR170C	YOR111W	Q99210	232 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	GCN4	P03069	281 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	SUI3	P09064	285 aa	Known RBP	4.75	□□□□□ -1.65
NPL4	YBR170C	CDC24	P11433	854 aa	Predicted RBP	4.75	□□□□□ -1.65
NPL4	YBR170C	CKA1	P15790	372 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	YEL025C	P39991	1188 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	ARB1	P40024	610 aa	Known RBP	4.75	□□□□□ -1.65
NPL4	YBR170C	YIR042C	P40586	236 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	YGR054W	P53235	642 aa	Known RBP	4.75	□□□□□ -1.65
NPL4	YBR170C	YPL071C	Q02864	156 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	FCP1	Q03254	732 aa		4.75	□□□□□ -1.65
NPL4	YBR170C	ATP2	P00830	511 aa	Known RBP	4.74	□□□□□ -1.65
NPL4	YBR170C	RED1	P14291	827 aa		4.74	□□□□□ -1.65
NPL4	YBR170C	MSS1	P32559	526 aa	Predicted RBP	4.74	□□□□□ -1.65
NPL4	YBR170C	PEX5	P35056	612 aa		4.74	□□□□□ -1.65
NPL4	YBR170C	PIG2	P40187	538 aa		4.74	□□□□□ -1.65
NPL4	YBR170C	AMA1	P50082	593 aa		4.74	□□□□□ -1.65
NPL4	YBR170C	REG1	Q00816	1014 aa		4.74	□□□□□ -1.65
NPL4	YBR170C	HOF1	Q05080	669 aa		4.74	□□□□□ -1.65
NPL4	YBR170C	ENT4	Q07872	247 aa		4.74	□□□□□ -1.65
NPL4	YBR170C	CHS5	Q12114	671 aa	Known RBP	4.74	□□□□□ -1.65
NPL4	YBR170C	HUA2	Q12134	243 aa		4.74	□□□□□ -1.65
NPL4	YBR170C	LAS17	Q12446	633 aa		4.74	□□□□□ -1.65
NPL4	YBR170C	YBR126W-A	Q8TGU7	68 aa		4.74	□□□□□ -1.65
NPL4	YBR170C	ARG3	P05150	338 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	PRP28	P23394	588 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	ERG3	P32353	365 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	DSS4	P32601	143 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	PXA2	P34230	853 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	YBR053C	P38235	358 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	ARF3	P40994	183 aa	RIP-Chip data	4.73	□□□□□ -1.65	not detected
NPL4	YBR170C	CIR1	P42940	261 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	IDS2	P46958	469 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	MSE1	P48525	536 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	VPS4	P52917	437 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	YGR250C	P53316	781 aa	Known RBP	4.73	□□□□□ -1.65
NPL4	YBR170C	VPS75	P53853	264 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	CIR2	Q08822	631 aa		4.73	□□□□□ -1.65
NPL4	YBR170C	MET17	P06106	444 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	SEC53	P07283	254 aa	Known RBP	4.72	□□□□□ -1.65
NPL4	YBR170C	ERG8	P24521	451 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	RPC53	P25441	422 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	MVD1	P32377	396 aa	Known RBP	4.72	□□□□□ -1.65
NPL4	YBR170C	MTH1	P35198	433 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	BYE1	P36106	594 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	LSM5	P40089	93 aa	Known RBP	4.72	□□□□□ -1.65
NPL4	YBR170C	AXL1	P40851	1208 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	MRX6	P48564	524 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	MUP1	P50276	574 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	RAD30	Q04049	632 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	ENB1	Q08299	606 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	TMA16	Q08687	178 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	VCX1	Q99385	411 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	VPS34	P22543	875 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	YCK1	P23291	538 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	SWC3	P31376	625 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	GCD7	P32502	381 aa	Predicted RBP	4.72	□□□□□ -1.65
NPL4	YBR170C	TOA1	P32773	286 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
NPL4	YBR170C	SSL2	Q00578	843 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	RPT6	Q01939	405 aa	Known RBP	4.72	□□□□□ -1.65
NPL4	YBR170C	STP3	Q05937	343 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	NMD4	Q12129	218 aa		4.72	□□□□□ -1.65
NPL4	YBR170C	HSP82	P02829	709 aa	Known RBP	4.71	□□□□□ -1.66
NPL4	YBR170C	ROX1	P25042	368 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	YCR061W	P25639	631 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	GEX2	P36173	615 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	TDP1	P38319	544 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	UTP9	P38882	575 aa	Known RBP	4.71	□□□□□ -1.66
NPL4	YBR170C	FLC2	P39719	783 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	SPO22	P40511	975 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	MPS3	P47069	682 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	ASE1	P50275	885 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	YML6	P51998	286 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	UBC11	P52492	156 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	DSD1	P53095	428 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	NGL3	Q03210	505 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	IZH3	Q07959	543 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	CTI6	Q08923	506 aa		4.71	□□□□□ -1.66
NPL4	YBR170C	PNO1	Q99216	274 aa	Known RBP	4.71	□□□□□ -1.66
NPL4	YBR170C	TRP4	P07285	380 aa	Predicted RBP	4.7	□□□□□ -1.66
NPL4	YBR170C	CAF20	P12962	161 aa	Known RBP	4.7	□□□□□ -1.66
NPL4	YBR170C	URK1	P27515	501 aa		4.7	□□□□□ -1.66
NPL4	YBR170C	LST4	P34239	828 aa		4.7	□□□□□ -1.66
NPL4	YBR170C	BUD16	P39988	312 aa		4.7	□□□□□ -1.66
NPL4	YBR170C	SKP2	P42843	763 aa		4.7	□□□□□ -1.66
NPL4	YBR170C	AAD10	P47182	288 aa		4.7	□□□□□ -1.66
NPL4	YBR170C	RCF1	Q03713	159 aa		4.7	□□□□□ -1.66
NPL4	YBR170C	YMR155W	Q03795	547 aa		4.7	□□□□□ -1.66
NPL4	YBR170C	DLT1	Q04216	342 aa		4.7	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms