RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 KLKP1Q107X0 134 aa4.57□□□□□ -1.68
LDLR-210ENST00000559340 C20orf197Q8N268 126 aa4.56□□□□□ -1.68
LDLR-210ENST00000559340 ANAPC13Q9BS18 74 aa4.56□□□□□ -1.68
LDLR-210ENST00000559340 KRTAP4-8Q9BYQ9 185 aa4.54□□□□□ -1.68
LDLR-210ENST00000559340 SNURFQ9Y675 71 aa4.54□□□□□ -1.68
LDLR-210ENST00000559340 KRTAP3-1Q9BYR8 98 aa4.53□□□□□ -1.68
LDLR-210ENST00000559340 S4R3F8 94 aa4.53□□□□□ -1.68
LDLR-210ENST00000559340 NDUFC1O43677 76 aa4.52□□□□□ -1.69
LDLR-210ENST00000559340 ACYP2P14621 99 aa4.49□□□□□ -1.69
LDLR-210ENST00000559340 CSAG1Q6PB30 78 aa4.49□□□□□ -1.69
LDLR-210ENST00000559340 SPANXA2-OT1Q8N9U9 137 aa4.49□□□□□ -1.69
LDLR-210ENST00000559340 KRTAP10-6P60371 365 aaPredicted RBP4.48□□□□□ -1.69
LDLR-210ENST00000559340 DMAC1Q96GE9 116 aa4.48□□□□□ -1.69
LDLR-210ENST00000559340 LCA10Q71F78 164 aa4.45□□□□□ -1.7
LDLR-210ENST00000559340 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.44□□□□□ -1.7
LDLR-210ENST00000559340 SPTSSBQ8NFR3 76 aa4.42□□□□□ -1.7
LDLR-210ENST00000559340 CHKB-CPT1BH3BT56 60 aa4.41□□□□□ -1.7
LDLR-210ENST00000559340 CCDC179H3BU77 68 aa4.4□□□□□ -1.71
LDLR-210ENST00000559340 H7BZZ5 65 aa4.4□□□□□ -1.71
LDLR-210ENST00000559340 LCE3BQ5TA77 95 aa4.39□□□□□ -1.71
LDLR-210ENST00000559340 KRTAP9-8Q9BYQ0 159 aa4.38□□□□□ -1.71
LDLR-210ENST00000559340 ATP5EP56381 51 aaPredicted RBP4.36□□□□□ -1.71
LDLR-210ENST00000559340 KRTAP10-10P60014 251 aa4.36□□□□□ -1.71
LDLR-210ENST00000559340 MT2AP02795 61 aa4.35□□□□□ -1.71
LDLR-210ENST00000559340 CYSTM1Q9H1C7 97 aa4.35□□□□□ -1.71
LDLR-210ENST00000559340 KRTAP9-7A8MTY7 169 aa4.33□□□□□ -1.72
LDLR-210ENST00000559340 H0YAA0 97 aa4.33□□□□□ -1.72
LDLR-210ENST00000559340 SEC61GP60059 68 aa4.33□□□□□ -1.72
LDLR-210ENST00000559340 RPS28P62857 69 aaKnown RBP4.33□□□□□ -1.72
LDLR-210ENST00000559340 COA5Q86WW8 74 aa4.32□□□□□ -1.72
LDLR-210ENST00000559340 KRTAP4-12Q9BQ66 201 aa4.32□□□□□ -1.72
LDLR-210ENST00000559340 TMEM258P61165 79 aa4.31□□□□□ -1.72
LDLR-210ENST00000559340 MT1FP04733 61 aa4.3□□□□□ -1.72
LDLR-210ENST00000559340 CRIPTQ9P021 101 aa4.28□□□□□ -1.72
LDLR-210ENST00000559340 ADM2Q7Z4H4 148 aa4.27□□□□□ -1.73
LDLR-210ENST00000559340 PRO0628Q9UI54 55 aa4.25□□□□□ -1.73
LDLR-210ENST00000559340 V9GYY9 64 aa4.25□□□□□ -1.73
LDLR-210ENST00000559340 KRTAP9-3Q9BYQ3 159 aa4.24□□□□□ -1.73
LDLR-210ENST00000559340 KRTAP19-1Q8IUB9 90 aa4.23□□□□□ -1.73
LDLR-210ENST00000559340 KRTAP9-9Q9BYP9 154 aa4.22□□□□□ -1.73
LDLR-210ENST00000559340 KRTAP9-4Q9BYQ2 154 aa4.22□□□□□ -1.73
LDLR-210ENST00000559340 SERP1Q9Y6X1 66 aa4.21□□□□□ -1.74
LDLR-210ENST00000559340 USH2AO75445 5202 aa4.2□□□□□ -1.74
LDLR-210ENST00000559340 SSPOA2VEC9 5147 aa4.19□□□□□ -1.74
LDLR-210ENST00000559340 KRTAP4-8A0A0G2JLE6 195 aa4.18□□□□□ -1.74
LDLR-210ENST00000559340 P0C880 135 aa4.17□□□□□ -1.74
LDLR-210ENST00000559340 SPRR2GQ9BYE4 73 aa4.17□□□□□ -1.74
LDLR-210ENST00000559340 R4GN34 69 aa4.17□□□□□ -1.74
LDLR-210ENST00000559340 FCGBPQ9Y6R7 5405 aaPredicted RBP4.15□□□□□ -1.74
LDLR-210ENST00000559340 A0A1B0GU69 56 aa4.14□□□□□ -1.75
LDLR-210ENST00000559340 M0QZ58 72 aa4.14□□□□□ -1.75
LDLR-210ENST00000559340 PRR15LQ9BU68 103 aa4.14□□□□□ -1.75
LDLR-210ENST00000559340 Q5VV11 94 aa4.11□□□□□ -1.75
LDLR-210ENST00000559340 KRTAP19-8Q3LI54 63 aa4.1□□□□□ -1.75
LDLR-210ENST00000559340 LINC01558Q9Y6Z2 57 aa4.1□□□□□ -1.75
LDLR-210ENST00000559340 SYNE2Q8WXH0 6885 aaKnown RBP4.09□□□□□ -1.75
LDLR-210ENST00000559340 A0A1B0GU33 70 aa4.08□□□□□ -1.76
LDLR-210ENST00000559340 MACF1Q9UPN3 7388 aaKnown RBP4.08□□□□□ -1.76
LDLR-210ENST00000559340 LCE1DQ5T752 114 aa4.07□□□□□ -1.76
LDLR-210ENST00000559340 PLAC4Q8WY50 150 aa4.06□□□□□ -1.76
LDLR-210ENST00000559340 SMIM26A0A096LP01 95 aa4.05□□□□□ -1.76
LDLR-210ENST00000559340 LINC01554Q52M75 96 aa4.05□□□□□ -1.76
LDLR-210ENST00000559340 KRTAP19-6Q3LI70 58 aa4.04□□□□□ -1.76
LDLR-210ENST00000559340 KRTAP4-7Q9BYR0 210 aa4.04□□□□□ -1.76
LDLR-210ENST00000559340 MT1BP07438 61 aa4.02□□□□□ -1.77
LDLR-210ENST00000559340 PMAIP1Q13794 54 aa4.02□□□□□ -1.77
LDLR-210ENST00000559340 Q1T7F1 81 aa4.01□□□□□ -1.77
LDLR-210ENST00000559340 A6NN06 94 aa4□□□□□ -1.77
LDLR-210ENST00000559340 KRTAP6-3Q3LI67 103 aa3.99□□□□□ -1.77
LDLR-210ENST00000559340 UQCR11O14957 56 aa3.97□□□□□ -1.77
LDLR-210ENST00000559340 KRTAP13-4Q3LI77 160 aa3.97□□□□□ -1.77
LDLR-210ENST00000559340 SPATA8Q6RVD6 105 aa3.97□□□□□ -1.77
LDLR-210ENST00000559340 PRO2289Q9P1D8 64 aa3.95□□□□□ -1.78
LDLR-210ENST00000559340 A0A0D9SG42 100 aa3.94□□□□□ -1.78
LDLR-210ENST00000559340 KRTAP4-9Q9BYQ8 210 aa3.94□□□□□ -1.78
LDLR-210ENST00000559340 PSPHP1O15172 72 aa3.93□□□□□ -1.78
LDLR-210ENST00000559340 BRK1Q8WUW1 75 aa3.93□□□□□ -1.78
LDLR-210ENST00000559340 KRTAP10-5P60370 271 aa3.91□□□□□ -1.78
LDLR-210ENST00000559340 SPINT4Q6UDR6 99 aa3.9□□□□□ -1.79
LDLR-210ENST00000559340 MIR22HGQ0VDD5 57 aa3.89□□□□□ -1.79
LDLR-210ENST00000559340 CAMK2N1Q7Z7J9 78 aa3.89□□□□□ -1.79
LDLR-210ENST00000559340 KRTAP19-4Q3LI73 84 aa3.87□□□□□ -1.79
LDLR-210ENST00000559340 NEBP20929 6669 aa3.87□□□□□ -1.79
LDLR-210ENST00000559340 A8MU10 97 aa3.86□□□□□ -1.79
LDLR-210ENST00000559340 A6NED7 52 aa3.85□□□□□ -1.79
LDLR-210ENST00000559340 H3BS24 57 aa3.85□□□□□ -1.79
LDLR-210ENST00000559340 KRTAP12-1P59990 96 aa3.85□□□□□ -1.79
LDLR-210ENST00000559340 LCE4AQ5TA78 99 aa3.85□□□□□ -1.79
LDLR-210ENST00000559340 KRTAP4-2Q9BYR5 136 aa3.85□□□□□ -1.79
LDLR-210ENST00000559340 K7ERS5 55 aa3.84□□□□□ -1.79
LDLR-210ENST00000559340 KTN1-AS1Q86SY8 53 aa3.84□□□□□ -1.79
LDLR-210ENST00000559340 MT1XP80297 61 aa3.83□□□□□ -1.8
LDLR-210ENST00000559340 KRTAP12-2P59991 146 aa3.81□□□□□ -1.8
LDLR-210ENST00000559340 KRTAP20-1Q3LI63 56 aa3.79□□□□□ -1.8
LDLR-210ENST00000559340 KRTAP4-11Q9BYQ6 195 aa3.79□□□□□ -1.8
LDLR-210ENST00000559340 MUC12Q9UKN1 5478 aa3.76□□□□□ -1.81
LDLR-210ENST00000559340 CDC42SE1Q9NRR8 79 aa3.74□□□□□ -1.81
LDLR-210ENST00000559340 KRTAP5-9P26371 169 aa3.72□□□□□ -1.81
LDLR-210ENST00000559340 LCE5AQ5TCM9 118 aa3.71□□□□□ -1.82
LDLR-210ENST00000559340 TNP1P09430 55 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms