RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 RPS28P62857 69 aaKnown RBP4.97□□□□□ -1.61
USP54-214ENST00000492357 RBM12B-AS1Q9P1G2 102 aa4.97□□□□□ -1.61
USP54-214ENST00000492357 FAM236DA0A1B0GTK5 79 aa4.96□□□□□ -1.62
USP54-214ENST00000492357 FAM236CP0DP71 79 aa4.96□□□□□ -1.62
USP54-214ENST00000492357 COX6B2Q6YFQ2 88 aa4.96□□□□□ -1.62
USP54-214ENST00000492357 KRTAP23-1A1A580 65 aa4.95□□□□□ -1.62
USP54-214ENST00000492357 DMAC1Q96GE9 116 aa4.95□□□□□ -1.62
USP54-214ENST00000492357 LCE4AQ5TA78 99 aa4.94□□□□□ -1.62
USP54-214ENST00000492357 KRTAP3-1Q9BYR8 98 aa4.94□□□□□ -1.62
USP54-214ENST00000492357 KRTAP9-9Q9BYP9 154 aa4.93□□□□□ -1.62
USP54-214ENST00000492357 KRTAP9-4Q9BYQ2 154 aa4.93□□□□□ -1.62
USP54-214ENST00000492357 KRTAP9-7A8MTY7 169 aa4.91□□□□□ -1.62
USP54-214ENST00000492357 ACYP2P14621 99 aa4.91□□□□□ -1.62
USP54-214ENST00000492357 C4orf26Q17RF5 130 aa4.91□□□□□ -1.62
USP54-214ENST00000492357 SERP1Q9Y6X1 66 aa4.9□□□□□ -1.63
USP54-214ENST00000492357 KRTAP4-1Q9BYQ7 146 aa4.89□□□□□ -1.63
USP54-214ENST00000492357 H1FX-AS1Q4G0G2 97 aa4.87□□□□□ -1.63
USP54-214ENST00000492357 SPTSSBQ8NFR3 76 aa4.83□□□□□ -1.64
USP54-214ENST00000492357 UBR4Q5T4S7 5183 aa4.83□□□□□ -1.64
USP54-214ENST00000492357 KRTAP19-2Q3LHN2 52 aa4.82□□□□□ -1.64
USP54-214ENST00000492357 COA5Q86WW8 74 aa4.8□□□□□ -1.64
USP54-214ENST00000492357 SMIM26A0A096LP01 95 aa4.79□□□□□ -1.64
USP54-214ENST00000492357 KRTAP4-8A0A0G2JLE6 195 aa4.79□□□□□ -1.64
USP54-214ENST00000492357 CHKB-CPT1BH3BT56 60 aa4.79□□□□□ -1.64
USP54-214ENST00000492357 RNF213Q63HN8 5207 aa4.78□□□□□ -1.64
USP54-214ENST00000492357 S4R3F8 94 aa4.78□□□□□ -1.64
USP54-214ENST00000492357 LCE1DQ5T752 114 aa4.76□□□□□ -1.65
USP54-214ENST00000492357 CSAG1Q6PB30 78 aa4.73□□□□□ -1.65
USP54-214ENST00000492357 LCA10Q71F78 164 aa4.73□□□□□ -1.65
USP54-214ENST00000492357 MUC2Q02817 5179 aa4.71□□□□□ -1.66
USP54-214ENST00000492357 H0YAA0 97 aa4.7□□□□□ -1.66
USP54-214ENST00000492357 KRTAP9-3Q9BYQ3 159 aa4.7□□□□□ -1.66
USP54-214ENST00000492357 V9GYY9 64 aa4.7□□□□□ -1.66
USP54-214ENST00000492357 Q1T7F1 81 aa4.69□□□□□ -1.66
USP54-214ENST00000492357 SVIPQ8NHG7 77 aa4.68□□□□□ -1.66
USP54-214ENST00000492357 FLGP20930 4061 aaPredicted RBP4.67□□□□□ -1.66
USP54-214ENST00000492357 MT1HP80294 61 aa4.66□□□□□ -1.66
USP54-214ENST00000492357 LINC01558Q9Y6Z2 57 aa4.63□□□□□ -1.67
USP54-214ENST00000492357 SEC61GP60059 68 aa4.62□□□□□ -1.67
USP54-214ENST00000492357 LCE5AQ5TCM9 118 aa4.62□□□□□ -1.67
USP54-214ENST00000492357 PRR15LQ9BU68 103 aa4.61□□□□□ -1.67
USP54-214ENST00000492357 KRTAP4-7Q9BYR0 210 aa4.61□□□□□ -1.67
USP54-214ENST00000492357 FAT4Q6V0I7 4981 aa4.6□□□□□ -1.67
USP54-214ENST00000492357 M0R2T5 61 aa4.6□□□□□ -1.67
USP54-214ENST00000492357 A0A1B0GU69 56 aa4.57□□□□□ -1.68
USP54-214ENST00000492357 KRTAP4-9Q9BYQ8 210 aa4.57□□□□□ -1.68
USP54-214ENST00000492357 CRIPTQ9P021 101 aa4.55□□□□□ -1.68
USP54-214ENST00000492357 Q5VV11 94 aa4.53□□□□□ -1.68
USP54-214ENST00000492357 PSPHP1O15172 72 aa4.52□□□□□ -1.69
USP54-214ENST00000492357 KRTAP10-6P60371 365 aaPredicted RBP4.52□□□□□ -1.69
USP54-214ENST00000492357 ADM2Q7Z4H4 148 aa4.51□□□□□ -1.69
USP54-214ENST00000492357 KRTAP15-1Q3LI76 137 aa4.5□□□□□ -1.69
USP54-214ENST00000492357 M0QZ58 72 aa4.49□□□□□ -1.69
USP54-214ENST00000492357 KRTAP9-8Q9BYQ0 159 aa4.48□□□□□ -1.69
USP54-214ENST00000492357 A0A1B0GU33 70 aa4.46□□□□□ -1.7
USP54-214ENST00000492357 MT2AP02795 61 aa4.46□□□□□ -1.7
USP54-214ENST00000492357 KRTAP4-11Q9BYQ6 195 aa4.46□□□□□ -1.7
USP54-214ENST00000492357 UQCR11O14957 56 aa4.45□□□□□ -1.7
USP54-214ENST00000492357 P0C880 135 aa4.45□□□□□ -1.7
USP54-214ENST00000492357 R4GN34 69 aa4.42□□□□□ -1.7
USP54-214ENST00000492357 KRTAP10-10P60014 251 aa4.41□□□□□ -1.7
USP54-214ENST00000492357 A6NED7 52 aa4.39□□□□□ -1.71
USP54-214ENST00000492357 MT1FP04733 61 aa4.39□□□□□ -1.71
USP54-214ENST00000492357 SPRR2GQ9BYE4 73 aa4.39□□□□□ -1.71
USP54-214ENST00000492357 KRTAP4-2Q9BYR5 136 aa4.39□□□□□ -1.71
USP54-214ENST00000492357 CDC42SE1Q9NRR8 79 aa4.38□□□□□ -1.71
USP54-214ENST00000492357 A6NN06 94 aa4.37□□□□□ -1.71
USP54-214ENST00000492357 SPATA8Q6RVD6 105 aa4.37□□□□□ -1.71
USP54-214ENST00000492357 BRK1Q8WUW1 75 aa4.37□□□□□ -1.71
USP54-214ENST00000492357 PRO0628Q9UI54 55 aa4.36□□□□□ -1.71
USP54-214ENST00000492357 MIR22HGQ0VDD5 57 aa4.34□□□□□ -1.71
USP54-214ENST00000492357 KRTAP13-4Q3LI77 160 aa4.31□□□□□ -1.72
USP54-214ENST00000492357 A8MU10 97 aa4.29□□□□□ -1.72
USP54-214ENST00000492357 KRTAP19-8Q3LI54 63 aa4.29□□□□□ -1.72
USP54-214ENST00000492357 K7ERS5 55 aa4.26□□□□□ -1.73
USP54-214ENST00000492357 LINC01554Q52M75 96 aa4.22□□□□□ -1.73
USP54-214ENST00000492357 PLAC4Q8WY50 150 aa4.21□□□□□ -1.74
USP54-214ENST00000492357 A0A0D9SG42 100 aa4.2□□□□□ -1.74
USP54-214ENST00000492357 KRTAP12-1P59990 96 aa4.2□□□□□ -1.74
USP54-214ENST00000492357 MT1BP07438 61 aa4.17□□□□□ -1.74
USP54-214ENST00000492357 PMAIP1Q13794 54 aa4.16□□□□□ -1.74
USP54-214ENST00000492357 A0A0A0MQY5 61 aa4.15□□□□□ -1.75
USP54-214ENST00000492357 SPINT4Q6UDR6 99 aa4.15□□□□□ -1.75
USP54-214ENST00000492357 KRTAP12-2P59991 146 aa4.14□□□□□ -1.75
USP54-214ENST00000492357 CAMK2N1Q7Z7J9 78 aa4.11□□□□□ -1.75
USP54-214ENST00000492357 PRO2289Q9P1D8 64 aa4.1□□□□□ -1.75
USP54-214ENST00000492357 KRTAP19-6Q3LI70 58 aa4.06□□□□□ -1.76
USP54-214ENST00000492357 USH2AO75445 5202 aa4.05□□□□□ -1.76
USP54-214ENST00000492357 KRTAP10-5P60370 271 aa4.03□□□□□ -1.76
USP54-214ENST00000492357 KTN1-AS1Q86SY8 53 aa4.02□□□□□ -1.77
USP54-214ENST00000492357 MT1XP80297 61 aa4.01□□□□□ -1.77
USP54-214ENST00000492357 ROMO1P60602 79 aa3.99□□□□□ -1.77
USP54-214ENST00000492357 KRTAP25-1Q3LHN0 102 aa3.96□□□□□ -1.78
USP54-214ENST00000492357 C10orf95Q9H7T3 257 aa3.95□□□□□ -1.78
USP54-214ENST00000492357 TNP1P09430 55 aa3.94□□□□□ -1.78
USP54-214ENST00000492357 SSPOA2VEC9 5147 aa3.93□□□□□ -1.78
USP54-214ENST00000492357 CRCT1Q9UGL9 99 aa3.93□□□□□ -1.78
USP54-214ENST00000492357 FSIP2Q5CZC0 6907 aa3.88□□□□□ -1.79
USP54-214ENST00000492357 KRTAP10-12P60413 245 aa3.86□□□□□ -1.79
USP54-214ENST00000492357 PP632Q6XCG6 107 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms