RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 LoxP28301 411 aa12.42□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Higd1aQ9JLR9 95 aa12.42□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Ighv1-55A0A075B5W6 117 aa12.42□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Ighv3-4A0A0A6YXF1 117 aa12.42□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Gpx1P11352 201 aa12.42□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Scgb1b2O35176 93 aa12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 F11rO88792 300 aa12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 P04940 107 aa12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 P04941 107 aa12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Mrpl53Q9D1H8 118 aaKnown RBP12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 4933414I15RikQ9D4D5 133 aa12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Col6a4A2AX52 2309 aa12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Lama2Q60675 3118 aaKnown RBP12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Trdv5A0A075B661 115 aa12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 TdhQ8K3F7 373 aa12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Prok1Q14A28 105 aa12.41□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Insl3O09107 122 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 GlrxQ9QUH0 107 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Igkv4-90A0A075B5L3 117 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Gm6793B2RXM2 351 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Fam240bJ3QMB3 78 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Pgpep1Q9ESW8 209 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Plac1Q9JI83 173 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Ovol1Q9WTJ2 267 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Gm9970F6ZED4 185 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 9130213A22RikQ3V3T2 120 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Slc25a48Q8BW66 306 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Chac1Q8R3J5 223 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 Ndufc2Q9CQ54 120 aa12.4□□□□□ -0.42
Ccdc88b-201ENSMUST00000113440 8030423J24RikQ9CX45 142 aa12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 PpbpQ9EQI5 113 aa12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Lsm4Q9QXA5 137 aaKnown RBP12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Gm26938S4R185 226 aa12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Cxcl14Q9WUQ5 99 aa12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 P01630 113 aa12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Mtatp8P03930 67 aa12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Olfr745Q7TRL9 328 aa12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Znf672Q99LH4 468 aa12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Gm94Q3V2D2 93 aa12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Usmg5Q78IK2 58 aa12.39□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Gm29666A0A087WQ99 126 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Ube2e1P52482 193 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Gm12845A0A0N4SUM5 588 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Trav7-2Q5R1I3 112 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 3110018I06RikQ9CXS0 120 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Ighv5-8A0A075B676 92 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Edn3P48299 214 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Tspan13Q9D8C2 204 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Trav6-4A0A075B6B4 115 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Card19Q9D1I2 183 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Nit2Q9JHW2 276 aa12.38□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Col4a4Q9QZR9 1682 aa12.37□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Cela2aP05208 271 aa12.37□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Tmem52Q9D702 196 aa12.37□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Rs1Q9Z1L4 224 aa12.37□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Iglv1A0A075B663 117 aa12.36□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Gm5819E9PZ96 154 aa12.36□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Hist1h1tQ07133 208 aa12.36□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Ighv1-62-2A0A0A6YXZ4 119 aa12.36□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Pde6hP61249 83 aa12.36□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Fbxl15Q91W61 300 aa12.36□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Cspg4Q8VHY0 2327 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Gm6899Q3USS0 134 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Clec4b2Q67DU8 208 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Trav6d-7A0A075B6B0 112 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Gm867A0A1W2P7T4 151 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 P01736 120 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Defa16P50714 93 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 A930003A15RikQ3U552 87 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Trav12-3A0A075B648 115 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 P0C1Z5 52 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Defa-rs2P17534 91 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Ighv3-6P18531 116 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 MdfiP70331 251 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Obox1Q9D350 204 aa12.35□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 P04942 107 aa12.34□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Defa7P50705 93 aa12.34□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 F930015N05RikQ8C3A3 210 aa12.34□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Fam216bQ8CC14 138 aa12.34□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Adamts20P59511 1906 aa12.34□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Fxyd7P59648 80 aa12.34□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Prop1P97458 223 aa12.34□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Gm7489Q3UT34 171 aa12.34□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Lyg1Q9D7Q0 197 aa12.34□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Mfap4Q9D1H9 257 aa12.34□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Nat8b-psE0CYC6 232 aa12.33□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Olfr317Q5NCD6 327 aa12.33□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Morn3Q8C5T4 241 aa12.33□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Gm5105Q8C6Y9 112 aa12.33□□□□□ -0.43
Ccdc88b-201ENSMUST00000113440 Trav2Q5R1I9 109 aa12.33□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Tcrg-C1A0A075B5Z0 172 aa12.33□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Tcrg-C3L7N479 172 aa12.33□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Hbb-b2P02089 147 aa12.33□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ighv5-6A0A075B5Q0 117 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm10188Q3V432 135 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ang2Q64438 145 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Cysltr1Q99JA4 352 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ncoa6Q9JL19 2067 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ighv14-1A0A075B5R4 117 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Sfta2E9PXB6 77 aa12.32□□□□□ -0.44
Retrieved 100 of 22,080 RNA–protein pairs in 66.8 ms