Protein–RNA interactions for Protein: Q5R1I9

Trav2, T cell receptor alpha variable 2 (Fragment), mousemouse

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav2Q5R1I9 Gm25239-201ENSMUST00000174915 86 ntBASIC30,33■■■□□ 2,45
Trav2Q5R1I9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC27,99■■■□□ 2,07
Trav2Q5R1I9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC27,68■■■□□ 2,02
Trav2Q5R1I9 Gm15042-201ENSMUST00000120212 883 ntBASIC26,64■■□□□ 1,86
Trav2Q5R1I9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26,34■■□□□ 1,81
Trav2Q5R1I9 Gm24109-201ENSMUST00000175489 103 ntBASIC26,19■■□□□ 1,78
Trav2Q5R1I9 Gm15045-201ENSMUST00000117359 883 ntBASIC26■■□□□ 1,75
Trav2Q5R1I9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25,9■■□□□ 1,74
Trav2Q5R1I9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC25,84■■□□□ 1,73
Trav2Q5R1I9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC25,6■■□□□ 1,69
Trav2Q5R1I9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC25,56■■□□□ 1,68
Trav2Q5R1I9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25,53■■□□□ 1,68
Trav2Q5R1I9 Gm23366-201ENSMUST00000175022 89 ntBASIC25,4■■□□□ 1,66
Trav2Q5R1I9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC25,23■■□□□ 1,63
Trav2Q5R1I9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24,95■■□□□ 1,58
Trav2Q5R1I9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC24,82■■□□□ 1,56
Trav2Q5R1I9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC24,75■■□□□ 1,55
Trav2Q5R1I9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC24,64■■□□□ 1,54
Trav2Q5R1I9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC24,58■■□□□ 1,53
Trav2Q5R1I9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC24,51■■□□□ 1,51
Trav2Q5R1I9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24,43■■□□□ 1,5
Trav2Q5R1I9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC24,42■■□□□ 1,5
Trav2Q5R1I9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC24,36■■□□□ 1,49
Trav2Q5R1I9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24,34■■□□□ 1,49
Trav2Q5R1I9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24,29■■□□□ 1,48
Trav2Q5R1I9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC24,28■■□□□ 1,48
Trav2Q5R1I9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC24,24■■□□□ 1,47
Trav2Q5R1I9 Psd-208ENSMUST00000224556 2034 ntBASIC24,23■■□□□ 1,47
Trav2Q5R1I9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24,21■■□□□ 1,47
Trav2Q5R1I9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC24,18■■□□□ 1,46
Trav2Q5R1I9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24,08■■□□□ 1,44
Trav2Q5R1I9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC24,03■■□□□ 1,44
Trav2Q5R1I9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC24,02■■□□□ 1,44
Trav2Q5R1I9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC23,98■■□□□ 1,43
Trav2Q5R1I9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC23,96■■□□□ 1,43
Trav2Q5R1I9 Gm25238-201ENSMUST00000174914 89 ntBASIC23,86■■□□□ 1,41
Trav2Q5R1I9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC23,83■■□□□ 1,41
Trav2Q5R1I9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23,73■■□□□ 1,39
Trav2Q5R1I9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC23,73■■□□□ 1,39
Trav2Q5R1I9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23,58■■□□□ 1,37
Trav2Q5R1I9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23,57■■□□□ 1,36
Trav2Q5R1I9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC23,54■■□□□ 1,36
Trav2Q5R1I9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC23,51■■□□□ 1,35
Trav2Q5R1I9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23,44■■□□□ 1,34
Trav2Q5R1I9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC23,43■■□□□ 1,34
Trav2Q5R1I9 Gm27325-201ENSMUST00000175467 74 ntBASIC23,34■■□□□ 1,33
Trav2Q5R1I9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23,32■■□□□ 1,32
Trav2Q5R1I9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC23,3■■□□□ 1,32
Trav2Q5R1I9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23,29■■□□□ 1,32
Trav2Q5R1I9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23,27■■□□□ 1,31
Trav2Q5R1I9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC23,25■■□□□ 1,31
Trav2Q5R1I9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC23,18■■□□□ 1,3
Trav2Q5R1I9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23,17■■□□□ 1,3
Trav2Q5R1I9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC23,16■■□□□ 1,3
Trav2Q5R1I9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC23,15■■□□□ 1,3
Trav2Q5R1I9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23,12■■□□□ 1,29
Trav2Q5R1I9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC23,08■■□□□ 1,28
Trav2Q5R1I9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC23,02■■□□□ 1,28
Trav2Q5R1I9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22,95■■□□□ 1,26
Trav2Q5R1I9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22,93■■□□□ 1,26
Trav2Q5R1I9 Gm25262-201ENSMUST00000174934 133 ntBASIC22,91■■□□□ 1,26
Trav2Q5R1I9 Rab21-202ENSMUST00000218831 843 ntBASIC22,89■■□□□ 1,25
Trav2Q5R1I9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC22,87■■□□□ 1,25
Trav2Q5R1I9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22,87■■□□□ 1,25
Trav2Q5R1I9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC22,85■■□□□ 1,25
Trav2Q5R1I9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22,84■■□□□ 1,25
Trav2Q5R1I9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC22,81■■□□□ 1,24
Trav2Q5R1I9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22,81■■□□□ 1,24
Trav2Q5R1I9 Gm10524-201ENSMUST00000181931 1893 ntBASIC22,8■■□□□ 1,24
Trav2Q5R1I9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22,8■■□□□ 1,24
Trav2Q5R1I9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22,79■■□□□ 1,24
Trav2Q5R1I9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22,78■■□□□ 1,24
Trav2Q5R1I9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC22,69■■□□□ 1,22
Trav2Q5R1I9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC22,69■■□□□ 1,22
Trav2Q5R1I9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22,67■■□□□ 1,22
Trav2Q5R1I9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC22,67■■□□□ 1,22
Trav2Q5R1I9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22,67■■□□□ 1,22
Trav2Q5R1I9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22,65■■□□□ 1,22
Trav2Q5R1I9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22,63■■□□□ 1,21
Trav2Q5R1I9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22,61■■□□□ 1,21
Trav2Q5R1I9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC22,54■■□□□ 1,2
Trav2Q5R1I9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC22,54■■□□□ 1,2
Trav2Q5R1I9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22,53■■□□□ 1,2
Trav2Q5R1I9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC22,53■■□□□ 1,2
Trav2Q5R1I9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC22,5■■□□□ 1,19
Trav2Q5R1I9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC22,45■■□□□ 1,18
Trav2Q5R1I9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC22,45■■□□□ 1,18
Trav2Q5R1I9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22,44■■□□□ 1,18
Trav2Q5R1I9 Gm42596-201ENSMUST00000196305 1958 ntBASIC22,42■■□□□ 1,18
Trav2Q5R1I9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC22,39■■□□□ 1,17
Trav2Q5R1I9 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22,37■■□□□ 1,17
Trav2Q5R1I9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC22,36■■□□□ 1,17
Trav2Q5R1I9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC22,34■■□□□ 1,17
Trav2Q5R1I9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC22,33■■□□□ 1,17
Trav2Q5R1I9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC22,31■■□□□ 1,16
Trav2Q5R1I9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC22,31■■□□□ 1,16
Trav2Q5R1I9 Gm26115-201ENSMUST00000175605 87 ntBASIC22,3■■□□□ 1,16
Trav2Q5R1I9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC22,28■■□□□ 1,16
Trav2Q5R1I9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22,28■■□□□ 1,16
Trav2Q5R1I9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC22,25■■□□□ 1,15
Retrieved 100 of 76,532 protein–RNA pairs in 13,2 ms