RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 APCP25054 2843 aa0.88□□□□□ -2.27
SCFD1-211ENST00000554437 COL6A3P12111 3177 aa0.88□□□□□ -2.27
SCFD1-211ENST00000554437 DSTQ03001 7570 aaKnown RBP0.88□□□□□ -2.27
SCFD1-211ENST00000554437 BPTFQ12830 3046 aa0.87□□□□□ -2.27
SCFD1-211ENST00000554437 LINC00308Q8TCZ7 52 aa0.87□□□□□ -2.27
SCFD1-211ENST00000554437 CSMD3Q7Z407 3707 aa0.87□□□□□ -2.27
SCFD1-211ENST00000554437 TENM3Q9P273 2699 aa0.87□□□□□ -2.27
SCFD1-211ENST00000554437 TPRP12270 2363 aaKnown RBP0.86□□□□□ -2.27
SCFD1-211ENST00000554437 GVINP1Q7Z2Y8 2422 aa0.86□□□□□ -2.27
SCFD1-211ENST00000554437 ANKRD36CQ5JPF3 1778 aa0.86□□□□□ -2.27
SCFD1-211ENST00000554437 NRXN3Q9Y4C0 1643 aa0.86□□□□□ -2.27
SCFD1-211ENST00000554437 UBR4Q5T4S7 5183 aa0.85□□□□□ -2.27
SCFD1-211ENST00000554437 RPS27P42677 84 aaKnown RBP0.85□□□□□ -2.27
SCFD1-211ENST00000554437 TENM4Q6N022 2769 aa0.85□□□□□ -2.27
SCFD1-211ENST00000554437 RPS27LQ71UM5 84 aaKnown RBP0.85□□□□□ -2.27
SCFD1-211ENST00000554437 ZNF469Q96JG9 3925 aaPredicted RBP0.85□□□□□ -2.27
SCFD1-211ENST00000554437 PKDREJQ9NTG1 2253 aa0.85□□□□□ -2.27
SCFD1-211ENST00000554437 REV3LO60673 3130 aa0.84□□□□□ -2.27
SCFD1-211ENST00000554437 ABRACLQ9P1F3 81 aa0.84□□□□□ -2.27
SCFD1-211ENST00000554437 ABCA5Q8WWZ7 1642 aa0.84□□□□□ -2.28
SCFD1-211ENST00000554437 CACNA1AO00555 2505 aa0.84□□□□□ -2.28
SCFD1-211ENST00000554437 AKAP6Q13023 2319 aa0.83□□□□□ -2.28
SCFD1-211ENST00000554437 SMIM27A0A1W2PRY6 76 aa0.83□□□□□ -2.28
SCFD1-211ENST00000554437 TOMM5Q8N4H5 51 aa0.83□□□□□ -2.28
SCFD1-211ENST00000554437 NEBP20929 6669 aa0.82□□□□□ -2.28
SCFD1-211ENST00000554437 TOGARAM1Q9Y4F4 1720 aa0.82□□□□□ -2.28
SCFD1-211ENST00000554437 WT1-ASQ06250 92 aa0.82□□□□□ -2.28
SCFD1-211ENST00000554437 PCLOQ9Y6V0 5065 aa0.82□□□□□ -2.28
SCFD1-211ENST00000554437 SYNE2Q8WXH0 6885 aaKnown RBP0.82□□□□□ -2.28
SCFD1-211ENST00000554437 CDC42BPAQ5VT25 1732 aa0.81□□□□□ -2.28
SCFD1-211ENST00000554437 LINC01546A6NGU7 62 aa0.81□□□□□ -2.28
SCFD1-211ENST00000554437 DEFB135Q30KP9 77 aa0.81□□□□□ -2.28
SCFD1-211ENST00000554437 WNK2Q9Y3S1 2297 aa0.8□□□□□ -2.28
SCFD1-211ENST00000554437 M0R2T5 61 aa0.8□□□□□ -2.28
SCFD1-211ENST00000554437 TIMM8BQ9Y5J9 83 aaPredicted RBP0.8□□□□□ -2.28
SCFD1-211ENST00000554437 A0A1B0GUL6 1792 aa0.8□□□□□ -2.28
SCFD1-211ENST00000554437 FSIP2Q5CZC0 6907 aa0.79□□□□□ -2.28
SCFD1-211ENST00000554437 VWFP04275 2813 aa0.79□□□□□ -2.28
SCFD1-211ENST00000554437 H0YGG7 62 aa0.78□□□□□ -2.28
SCFD1-211ENST00000554437 S4R3F8 94 aa0.78□□□□□ -2.28
SCFD1-211ENST00000554437 H3BUA1 57 aa0.77□□□□□ -2.29
SCFD1-211ENST00000554437 DEFB106AQ8N104 65 aa0.77□□□□□ -2.29
SCFD1-211ENST00000554437 IQGAP2Q13576 1575 aa0.77□□□□□ -2.29
SCFD1-211ENST00000554437 TRANK1O15050 2925 aa0.76□□□□□ -2.29
SCFD1-211ENST00000554437 CHD6Q8TD26 2715 aa0.76□□□□□ -2.29
SCFD1-211ENST00000554437 USP24Q9UPU5 2620 aa0.76□□□□□ -2.29
SCFD1-211ENST00000554437 KNL1Q8NG31 2342 aa0.76□□□□□ -2.29
SCFD1-211ENST00000554437 ALMS1Q8TCU4 4167 aa0.76□□□□□ -2.29
SCFD1-211ENST00000554437 PRLHP81277 87 aa0.75□□□□□ -2.29
SCFD1-211ENST00000554437 LMO7Q8WWI1 1683 aa0.75□□□□□ -2.29
SCFD1-211ENST00000554437 ATRQ13535 2644 aa0.74□□□□□ -2.29
SCFD1-211ENST00000554437 ABCA2Q9BZC7 2435 aa0.74□□□□□ -2.29
SCFD1-211ENST00000554437 PRM1P04553 51 aa0.73□□□□□ -2.29
SCFD1-211ENST00000554437 MUC2Q02817 5179 aa0.73□□□□□ -2.29
SCFD1-211ENST00000554437 TFF3Q07654 80 aa0.72□□□□□ -2.29
SCFD1-211ENST00000554437 OTOGQ6ZRI0 2925 aa0.71□□□□□ -2.29
SCFD1-211ENST00000554437 DSPP15924 2871 aaKnown RBP0.71□□□□□ -2.3
SCFD1-211ENST00000554437 KIAA1109Q2LD37 5005 aa0.71□□□□□ -2.3
SCFD1-211ENST00000554437 PDE4DIPQ5VU43 2346 aa0.71□□□□□ -2.3
SCFD1-211ENST00000554437 IQGAP1P46940 1657 aa0.7□□□□□ -2.3
SCFD1-211ENST00000554437 ZFYVE26Q68DK2 2539 aa0.7□□□□□ -2.3
SCFD1-211ENST00000554437 KMT2DO14686 5537 aa0.69□□□□□ -2.3
SCFD1-211ENST00000554437 PKD1L2Q7Z442 2459 aa0.69□□□□□ -2.3
SCFD1-211ENST00000554437 SMIM2Q9BVW6 85 aa0.69□□□□□ -2.3
SCFD1-211ENST00000554437 CSPG4Q6UVK1 2322 aa0.69□□□□□ -2.3
SCFD1-211ENST00000554437 FAM208AQ9UK61 1670 aaKnown RBP0.69□□□□□ -2.3
SCFD1-211ENST00000554437 TNXBP22105 4242 aa0.69□□□□□ -2.3
SCFD1-211ENST00000554437 SPTA1P02549 2419 aa0.68□□□□□ -2.3
SCFD1-211ENST00000554437 WFDC10BQ8IUB3 73 aa0.68□□□□□ -2.3
SCFD1-211ENST00000554437 KAAG1Q9UBP8 84 aa0.68□□□□□ -2.3
SCFD1-211ENST00000554437 KRTAP21-1Q3LI58 79 aa0.67□□□□□ -2.3
SCFD1-211ENST00000554437 AKAP13Q12802 2813 aa0.67□□□□□ -2.3
SCFD1-211ENST00000554437 KIF21BO75037 1637 aa0.67□□□□□ -2.3
SCFD1-211ENST00000554437 DDX60Q8IY21 1712 aaKnown RBP0.67□□□□□ -2.3
SCFD1-211ENST00000554437 MUC5ACP98088 5654 aa0.66□□□□□ -2.3
SCFD1-211ENST00000554437 BSNQ9UPA5 3926 aa0.66□□□□□ -2.3
SCFD1-211ENST00000554437 NCOR1O75376 2440 aa0.65□□□□□ -2.31
SCFD1-211ENST00000554437 IGF2RP11717 2491 aa0.65□□□□□ -2.31
SCFD1-211ENST00000554437 TOP2AP11388 1531 aaKnown RBP0.64□□□□□ -2.31
SCFD1-211ENST00000554437 NOP10Q9NPE3 64 aaKnown RBP0.64□□□□□ -2.31
SCFD1-211ENST00000554437 FAT2Q9NYQ8 4349 aa0.64□□□□□ -2.31
SCFD1-211ENST00000554437 PTPN13Q12923 2485 aa0.64□□□□□ -2.31
SCFD1-211ENST00000554437 MDN1Q9NU22 5596 aa0.64□□□□□ -2.31
SCFD1-211ENST00000554437 NFAT5O94916 1531 aa0.64□□□□□ -2.31
SCFD1-211ENST00000554437 SYNE1Q8NF91 8797 aaKnown RBP0.63□□□□□ -2.31
SCFD1-211ENST00000554437 CHD8Q9HCK8 2581 aa0.63□□□□□ -2.31
SCFD1-211ENST00000554437 PKD1L1Q8TDX9 2849 aa0.63□□□□□ -2.31
SCFD1-211ENST00000554437 EP300Q09472 2414 aaPredicted RBP0.63□□□□□ -2.31
SCFD1-211ENST00000554437 IGLV5-48A0A075B6I7 105 aa0.62□□□□□ -2.31
SCFD1-211ENST00000554437 PCNX1Q96RV3 2341 aa0.61□□□□□ -2.31
SCFD1-211ENST00000554437 PRKDCP78527 4128 aaKnown RBP0.61□□□□□ -2.31
SCFD1-211ENST00000554437 SPRR2DP22532 72 aa0.61□□□□□ -2.31
SCFD1-211ENST00000554437 PRRC2CQ9Y520 2896 aaKnown RBP0.6□□□□□ -2.31
SCFD1-211ENST00000554437 HECTD1Q9ULT8 2610 aa0.6□□□□□ -2.31
SCFD1-211ENST00000554437 NDUFA1O15239 70 aa0.59□□□□□ -2.31
SCFD1-211ENST00000554437 HUWE1Q7Z6Z7 4374 aaKnown RBP0.58□□□□□ -2.32
SCFD1-211ENST00000554437 ATP7AQ04656 1500 aa0.58□□□□□ -2.32
SCFD1-211ENST00000554437 C9orf92A6NGG3 77 aa0.57□□□□□ -2.32
SCFD1-211ENST00000554437 LRP1Q07954 4544 aaKnown RBP0.57□□□□□ -2.32
SCFD1-211ENST00000554437 TRPM2O94759 1503 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms