RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 TEX49A0A1B0GTD5 131 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 CYSRT1A8MQ03 144 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 SH2D1AO60880 128 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 CFHR3Q02985 330 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 RBMY1FQ15415 496 aaKnown RBP3.79□□□□□ -1.8
TMEM260-210ENST00000556422 GPHB5Q86YW7 130 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 MAPK1IP1LQ8NDC0 245 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 SLC50A1Q9BRV3 221 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 TRBV25-1A0A075B6N4 114 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 ZNF73O43830 326 aaPredicted RBP3.79□□□□□ -1.8
TMEM260-210ENST00000556422 TRGV3P03979 118 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 POM121L12Q8N7R1 296 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 TMEM158Q8WZ71 300 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 A0A1B0GUT8 65 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 IGLV1-40P01703 118 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 SOSTDC1Q6X4U4 206 aa3.79□□□□□ -1.8
TMEM260-210ENST00000556422 TRAV8-3A0A0A6YYJ7 113 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 RNF223E7ERA6 249 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 M0R381 172 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 ACYP1P07311 99 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 C20orf197Q8N268 126 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 SONP18583 2426 aaKnown RBP3.78□□□□□ -1.8
TMEM260-210ENST00000556422 H7C2G1 150 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 DSCR9P59020 149 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 TWIST1Q15672 202 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 SPTSSBQ8NFR3 76 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 LINC00474Q9P2X8 69 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 CCDC168Q8NDH2 2452 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 NIPBLQ6KC79 2804 aaeCLIP3.78□□□□□ -1.8
TMEM260-210ENST00000556422 H3BUA1 57 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 IGHV3-11P01762 117 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 IGHV4-59P01825 116 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 P0DMU3 169 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 FAM231AP0DMU4 169 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 FAM231CP0DMU5 169 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 FUSP35637 526 aaKnown RBP eCLIP3.78□□□□□ -1.8
TMEM260-210ENST00000556422 DEFB112Q30KQ8 113 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 FAM104BQ5XKR9 115 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 LYZL1Q6UWQ5 148 aa3.78□□□□□ -1.8
TMEM260-210ENST00000556422 TRBV7-6A0A0J9YX20 115 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 SOCS3O14543 225 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 FSHBP01225 129 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 MRPS36P82909 103 aaKnown RBP3.77□□□□□ -1.81
TMEM260-210ENST00000556422 C10orf99Q6UWK7 81 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 LINC01356Q8N9X3 169 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 SPATA3Q8NHX4 192 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 C11orf21Q9P2W6 132 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.77□□□□□ -1.81
TMEM260-210ENST00000556422 TRBV27A0A0K0K1C4 114 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 NDUFA4O00483 81 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 PRSS1P07477 247 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 COX6B1P14854 86 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 ZNF138P52744 262 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 CNFNQ9BYD5 112 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 ANK3Q12955 4377 aaKnown RBP3.77□□□□□ -1.81
TMEM260-210ENST00000556422 S100A4P26447 101 aaKnown RBP3.77□□□□□ -1.81
TMEM260-210ENST00000556422 ATXN8Q156A1 80 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 KRTAP1-3Q8IUG1 177 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 USMG5Q96IX5 58 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 TTTY13Q9BZ97 58 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 ZNF580Q9UK33 172 aa3.77□□□□□ -1.81
TMEM260-210ENST00000556422 AGRNO00468 2067 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 IGKV3D-20A0A0C4DH25 116 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 CKS2P33552 79 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 PRR9Q5T870 116 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 C9orf47Q6ZRZ4 202 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 FP248Q71RG6 208 aaPredicted RBP3.76□□□□□ -1.81
TMEM260-210ENST00000556422 SBSPONQ8IVN8 264 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 C6orf223Q8N319 242 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 CYSTM1Q9H1C7 97 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 SORL1Q92673 2214 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 IGHV4-31P0DP07 118 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 DEFB1P60022 68 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 RIGQ13278 110 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 VSIG2Q96IQ7 327 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 OVOL2Q9BRP0 275 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 C16orf95Q9H693 158 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 MSRB1Q9NZV6 116 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 ZNF706Q9Y5V0 76 aaPredicted RBP3.76□□□□□ -1.81
TMEM260-210ENST00000556422 A0A096LNJ9 63 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 M0R378 163 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 ZNF747Q9BV97 191 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 U3KQK5 164 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 MUC4Q99102 2169 aa3.76□□□□□ -1.81
TMEM260-210ENST00000556422 COX7A2LO14548 114 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 ZNF22P17026 224 aaPredicted RBP3.75□□□□□ -1.81
TMEM260-210ENST00000556422 IFI27P40305 119 aaPredicted RBP3.75□□□□□ -1.81
TMEM260-210ENST00000556422 ACANP16112 2415 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 IGHV7-4-1A0A0J9YVY3 117 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 A8MUN3 132 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 D6R8Y8 96 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 PRYO14603 147 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 GAS8-AS1O95177 125 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 HBDP02042 147 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 TM2D3Q9BRN9 247 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 NACAE9PAV3 2078 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 CCKP06307 115 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 DEFB113Q30KQ7 82 aa3.75□□□□□ -1.81
TMEM260-210ENST00000556422 MRPL51Q4U2R6 128 aaKnown RBP3.75□□□□□ -1.81
TMEM260-210ENST00000556422 RNF185Q96GF1 192 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 174 ms