RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C MAK21Q12176 1025 aaKnown RBP3.88□□□□□ -1.79
DNL4YOR005C COQ8P27697 501 aa3.88□□□□□ -1.79
DNL4YOR005C NSR1P27476 414 aaKnown RBP RIP-Chip data3.87□□□□□ -1.79not detected
DNL4YOR005C YOR238WQ08634 303 aa3.86□□□□□ -1.79
DNL4YOR005C AIM44Q99299 758 aa3.86□□□□□ -1.79
DNL4YOR005C VPS29P38759 282 aa3.85□□□□□ -1.79
DNL4YOR005C ORC1P54784 914 aaPredicted RBP3.85□□□□□ -1.79
DNL4YOR005C SSA1P10591 642 aaKnown RBP3.84□□□□□ -1.79
DNL4YOR005C GEF1P37020 779 aa3.84□□□□□ -1.79
DNL4YOR005C SLX8P40072 274 aa3.84□□□□□ -1.79
DNL4YOR005C TFB3Q03290 321 aa3.84□□□□□ -1.79
DNL4YOR005C COX6P00427 148 aa3.84□□□□□ -1.8
DNL4YOR005C ATF2P53296 535 aa3.83□□□□□ -1.8
DNL4YOR005C SUB2Q07478 446 aaKnown RBP3.83□□□□□ -1.8
DNL4YOR005C GTT3P39996 337 aa3.82□□□□□ -1.8
DNL4YOR005C EDS1P38073 919 aa3.82□□□□□ -1.8
DNL4YOR005C DNF1P32660 1571 aa3.81□□□□□ -1.8
DNL4YOR005C WSC3Q12215 556 aa3.81□□□□□ -1.8
DNL4YOR005C IRC20Q06554 1556 aa3.81□□□□□ -1.8
DNL4YOR005C YBL029C-AQ3E756 94 aa3.8□□□□□ -1.8
DNL4YOR005C PKC1P24583 1151 aa3.8□□□□□ -1.8
DNL4YOR005C YAP5P40574 245 aa3.8□□□□□ -1.8
DNL4YOR005C BRL1P38770 471 aa3.8□□□□□ -1.8
DNL4YOR005C NAP1P25293 417 aaKnown RBP3.79□□□□□ -1.8
DNL4YOR005C GLN1P32288 370 aaKnown RBP3.79□□□□□ -1.8
DNL4YOR005C VNX1P42839 908 aa3.79□□□□□ -1.8
DNL4YOR005C SPP1Q03012 353 aa3.78□□□□□ -1.8
DNL4YOR005C BIM1P40013 344 aa3.78□□□□□ -1.8
DNL4YOR005C YMR1P47147 688 aaKnown RBP RIP-Chip data3.77□□□□□ -1.81not detected
DNL4YOR005C SSA2P10592 639 aaKnown RBP3.77□□□□□ -1.81
DNL4YOR005C STS1P38637 319 aa3.77□□□□□ -1.81
DNL4YOR005C YDR090CQ03193 310 aa3.77□□□□□ -1.81
DNL4YOR005C ATG32P40458 529 aa3.76□□□□□ -1.81
DNL4YOR005C MRX12P47084 519 aa3.76□□□□□ -1.81
DNL4YOR005C SSA4P22202 642 aaKnown RBP3.76□□□□□ -1.81
DNL4YOR005C PTC3P34221 468 aaKnown RBP3.76□□□□□ -1.81
DNL4YOR005C YJL171CP46992 396 aa3.75□□□□□ -1.81
DNL4YOR005C YJL007CP47080 104 aa3.75□□□□□ -1.81
DNL4YOR005C CSN12P47130 423 aa3.75□□□□□ -1.81
DNL4YOR005C UBP14P38237 781 aaKnown RBP3.75□□□□□ -1.81
DNL4YOR005C IOC4Q04213 475 aa3.74□□□□□ -1.81
DNL4YOR005C MYO2P19524 1574 aaKnown RBP3.73□□□□□ -1.81
DNL4YOR005C DBP1P24784 617 aaKnown RBP3.73□□□□□ -1.81
DNL4YOR005C PSE1P32337 1089 aaKnown RBP3.73□□□□□ -1.81
DNL4YOR005C VHR2P40041 505 aa3.72□□□□□ -1.81
DNL4YOR005C NOP7P53261 605 aaKnown RBP3.72□□□□□ -1.81
DNL4YOR005C TIF1P10081 395 aaKnown RBP3.72□□□□□ -1.81
DNL4YOR005C KTR1P27810 393 aaKnown RBP3.72□□□□□ -1.81
DNL4YOR005C SLD2P34252 453 aa3.72□□□□□ -1.81
DNL4YOR005C PIB1Q06651 286 aa3.72□□□□□ -1.81
DNL4YOR005C AIR2Q12476 344 aaKnown RBP3.72□□□□□ -1.81
DNL4YOR005C YLR326WQ06170 240 aaKnown RBP3.71□□□□□ -1.81
DNL4YOR005C SGS1P35187 1447 aa3.71□□□□□ -1.82
DNL4YOR005C MDS3P53094 1487 aa3.71□□□□□ -1.82
DNL4YOR005C ERG12P07277 443 aa3.71□□□□□ -1.82
DNL4YOR005C TTI1P36097 1038 aa3.71□□□□□ -1.82
DNL4YOR005C IOC2Q12072 812 aa3.71□□□□□ -1.82
DNL4YOR005C REV3P14284 1504 aa3.71□□□□□ -1.82
DNL4YOR005C CPS1P27614 576 aa3.71□□□□□ -1.82
DNL4YOR005C SNU71P53207 620 aaKnown RBP3.71□□□□□ -1.82
DNL4YOR005C TIF11P38912 153 aaKnown RBP3.7□□□□□ -1.82
DNL4YOR005C NOB1Q08444 459 aaKnown RBP3.7□□□□□ -1.82
DNL4YOR005C RPL34BP40525 121 aaKnown RBP3.7□□□□□ -1.82
DNL4YOR005C CDC3P32457 520 aaKnown RBP3.69□□□□□ -1.82
DNL4YOR005C PAM1P37304 830 aaKnown RBP3.69□□□□□ -1.82
DNL4YOR005C SSF1P38789 453 aaPredicted RBP3.69□□□□□ -1.82
DNL4YOR005C SEN54Q02825 467 aaPredicted RBP3.69□□□□□ -1.82
DNL4YOR005C BIO2P32451 375 aa3.68□□□□□ -1.82
DNL4YOR005C YBL036CP38197 257 aa3.68□□□□□ -1.82
DNL4YOR005C KIC1P38692 1080 aa3.68□□□□□ -1.82
DNL4YOR005C RPL34AP87262 121 aaPredicted RBP3.68□□□□□ -1.82
DNL4YOR005C YPR204WQ08995 1032 aa3.68□□□□□ -1.82
DNL4YOR005C HEM3P28789 327 aa3.67□□□□□ -1.82
DNL4YOR005C ULI1P43604 169 aa3.67□□□□□ -1.82
DNL4YOR005C TEA1P47988 759 aa3.67□□□□□ -1.82
DNL4YOR005C TYW1Q08960 810 aaKnown RBP3.67□□□□□ -1.82
DNL4YOR005C PCS60P38137 543 aaKnown RBP RIP-Chip data3.67□□□□□ -1.82not detected
DNL4YOR005C ORC6P38826 435 aa3.67□□□□□ -1.82
DNL4YOR005C TY1B-DR4Q07793 1604 aa3.67□□□□□ -1.82
DNL4YOR005C RTG2P32608 588 aaKnown RBP3.66□□□□□ -1.82
DNL4YOR005C FKH1P40466 484 aa3.66□□□□□ -1.82
DNL4YOR005C YGR273CP53329 174 aa3.66□□□□□ -1.82
DNL4YOR005C RAD54P32863 898 aa3.66□□□□□ -1.82
DNL4YOR005C GUT1P32190 709 aa3.66□□□□□ -1.82
DNL4YOR005C RRN6P32786 894 aa3.66□□□□□ -1.82
DNL4YOR005C CSE4P36012 229 aa3.66□□□□□ -1.82
DNL4YOR005C KEX1P09620 729 aa3.65□□□□□ -1.82
DNL4YOR005C SUP45P12385 437 aaKnown RBP3.65□□□□□ -1.82
DNL4YOR005C MET10P39692 1035 aa3.65□□□□□ -1.82
DNL4YOR005C PUP1P25043 261 aa3.65□□□□□ -1.83
DNL4YOR005C ATH1P48016 1211 aa3.65□□□□□ -1.83
DNL4YOR005C SSN2P38931 1420 aa3.65□□□□□ -1.83
DNL4YOR005C VMA1P17255 1071 aaKnown RBP3.64□□□□□ -1.83
DNL4YOR005C YNL108CP53929 270 aa3.64□□□□□ -1.83
DNL4YOR005C YML083CQ04526 418 aa3.64□□□□□ -1.83
DNL4YOR005C GRE2Q12068 342 aaKnown RBP3.64□□□□□ -1.83
DNL4YOR005C RGR1P19263 1082 aa3.64□□□□□ -1.83
DNL4YOR005C SOL3P38858 249 aa3.64□□□□□ -1.83
DNL4YOR005C HST2P53686 357 aa3.64□□□□□ -1.83
DNL4YOR005C RAD59Q12223 238 aa3.63□□□□□ -1.83
Retrieved 100 of 5,963 RNA–protein pairs in 9.2 ms