RNA–Protein interactions for RNA: YKL014C

URB1, Transcript of Protein required for the normal accumulation of 25S and 5.8S rRNAs, yeast

Gene URB1, Length 5,295 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
URB1	YKL014C	TY1B-JR1	P47098	1755 aa		0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-ML2	Q03434	1755 aa	Known RBP	0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-ER1	Q03612	1755 aa		0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-ML1	Q04711	1755 aa	Known RBP	0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-GR2	Q12269	1755 aa		0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-OL	Q12273	1755 aa		0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-PL	Q12414	1755 aa	Known RBP	0.34	□□□□□ -2.36
URB1	YKL014C	TY1B-DR3	Q99231	1755 aa		0.34	□□□□□ -2.36
URB1	YKL014C	YKR023W	P36119	530 aa	Known RBP	0.33	□□□□□ -2.36
URB1	YKL014C	BCH2	P36122	765 aa		0.33	□□□□□ -2.36
URB1	YKL014C	PUS1	Q12211	544 aa	Known RBP	0.33	□□□□□ -2.36
URB1	YKL014C	VPS13	Q07878	3144 aa		0.32	□□□□□ -2.36
URB1	YKL014C	RPO21	P04050	1733 aa	Known RBP	0.31	□□□□□ -2.36
URB1	YKL014C	OXP1	P28273	1286 aa		0.31	□□□□□ -2.36
URB1	YKL014C	YOL036W	Q08206	761 aa		0.31	□□□□□ -2.36
URB1	YKL014C	HSL1	P34244	1518 aa		0.31	□□□□□ -2.36
URB1	YKL014C	TY2B-LR1	P0C2J3	1770 aa		0.31	□□□□□ -2.36
URB1	YKL014C	TY2B-F	P0CX63	1770 aa		0.31	□□□□□ -2.36
URB1	YKL014C	TY2B-GR2	P0CX64	1770 aa		0.31	□□□□□ -2.36
URB1	YKL014C	TY2B-C	P25384	1770 aa		0.31	□□□□□ -2.36
URB1	YKL014C	TY2B-DR2	Q03494	1770 aa		0.31	□□□□□ -2.36
URB1	YKL014C	TY1B-DR1	Q03855	1755 aa		0.31	□□□□□ -2.36
URB1	YKL014C	TY2B-DR3	Q07791	1770 aa	Known RBP	0.31	□□□□□ -2.36
URB1	YKL014C	TY2B-OR1	Q12113	1770 aa		0.31	□□□□□ -2.36
URB1	YKL014C	TY2B-DR1	Q12472	1770 aa		0.31	□□□□□ -2.36
URB1	YKL014C	TY2B-OR2	Q12501	1770 aa		0.31	□□□□□ -2.36
URB1	YKL014C	IRA1	P18963	3092 aa		0.31	□□□□□ -2.36
URB1	YKL014C	TY2B-B	Q12491	1770 aa		0.31	□□□□□ -2.36
URB1	YKL014C	YRF1-1	P0CX20	1796 aa		0.3	□□□□□ -2.36
URB1	YKL014C	YRF1-5	P0CX21	1796 aa		0.3	□□□□□ -2.36
URB1	YKL014C	YRF1-8	P0CX22	1796 aa		0.3	□□□□□ -2.36
URB1	YKL014C	TCB3	Q03640	1545 aa	Known RBP	0.3	□□□□□ -2.36
URB1	YKL014C	SSK2	P53599	1579 aa		0.3	□□□□□ -2.36
URB1	YKL014C	RSE1	Q04693	1361 aa	Known RBP	0.3	□□□□□ -2.36
URB1	YKL014C	ESC1	Q03661	1658 aa	Known RBP	0.29	□□□□□ -2.36
URB1	YKL014C	YIL177C	P40434	1758 aa		0.29	□□□□□ -2.36
URB1	YKL014C	YJL225C	P40889	1758 aa		0.29	□□□□□ -2.36
URB1	YKL014C	JIP4	Q03361	876 aa		0.29	□□□□□ -2.36
URB1	YKL014C	TY1B-JR2	P47100	1755 aa	Known RBP	0.29	□□□□□ -2.36
URB1	YKL014C	TY1B-ER2	Q03619	1755 aa		0.29	□□□□□ -2.36
URB1	YKL014C	TY1B-MR1	Q04214	1755 aa		0.29	□□□□□ -2.36
URB1	YKL014C	TY1B-MR2	Q04670	1755 aa	Known RBP	0.29	□□□□□ -2.36
URB1	YKL014C	TY1B-LR1	Q12088	1755 aa	Known RBP	0.29	□□□□□ -2.36
URB1	YKL014C	TY1B-NL1	Q12112	1755 aa		0.29	□□□□□ -2.36
URB1	YKL014C	TY1B-GR1	Q12141	1755 aa		0.29	□□□□□ -2.36
URB1	YKL014C	TY1B-BL	Q12490	1755 aa		0.29	□□□□□ -2.36
URB1	YKL014C	SPO14	P36126	1683 aa		0.29	□□□□□ -2.36
URB1	YKL014C	DOP1	Q03921	1698 aa		0.28	□□□□□ -2.36
URB1	YKL014C	AMS1	P22855	1083 aa		0.28	□□□□□ -2.36
URB1	YKL014C	YDR444W	Q04093	687 aa		0.28	□□□□□ -2.36
URB1	YKL014C	SPT23	P35210	1082 aa		0.28	□□□□□ -2.36
URB1	YKL014C	MET22	P32179	357 aa		0.28	□□□□□ -2.36
URB1	YKL014C	BDF1	P35817	686 aa		0.28	□□□□□ -2.36
URB1	YKL014C	NUP170	P38181	1502 aa		0.28	□□□□□ -2.37
URB1	YKL014C	HAP1	P0CE41	1502 aa		0.27	□□□□□ -2.37
URB1	YKL014C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	0.27	□□□□□ -2.37	not detected
URB1	YKL014C	EPS1	P40557	701 aa		0.27	□□□□□ -2.37
URB1	YKL014C	PDR10	P51533	1564 aa		0.27	□□□□□ -2.37
URB1	YKL014C	PTC2	P39966	464 aa	Known RBP	0.27	□□□□□ -2.37
URB1	YKL014C	YEL077C	Q3E7X8	1277 aa		0.27	□□□□□ -2.37
URB1	YKL014C	GYP1	Q08484	637 aa		0.27	□□□□□ -2.37
URB1	YKL014C	MON2	P48563	1636 aa	Predicted RBP	0.27	□□□□□ -2.37
URB1	YKL014C	YGR035C	P53222	116 aa		0.27	□□□□□ -2.37
URB1	YKL014C	YDR344C	Q05510	147 aa		0.27	□□□□□ -2.37
URB1	YKL014C	HIR3	P47171	1648 aa		0.27	□□□□□ -2.37
URB1	YKL014C	PML39	Q03760	334 aa		0.26	□□□□□ -2.37
URB1	YKL014C	YOR093C	Q12275	1648 aa		0.26	□□□□□ -2.37
URB1	YKL014C	DUR1,2	P32528	1835 aa	Known RBP	0.25	□□□□□ -2.37
URB1	YKL014C	SIN3	P22579	1536 aa		0.25	□□□□□ -2.37
URB1	YKL014C	NTE1	Q04958	1679 aa		0.25	□□□□□ -2.37
URB1	YKL014C	TRK2	P28584	889 aa		0.25	□□□□□ -2.37
URB1	YKL014C	TY1B-NL2	Q99337	1749 aa	Known RBP	0.25	□□□□□ -2.37
URB1	YKL014C	PEP1	P32319	1579 aa		0.25	□□□□□ -2.37
URB1	YKL014C	RPA190	P10964	1664 aa	Known RBP	0.25	□□□□□ -2.37
URB1	YKL014C	REV3	P14284	1504 aa		0.25	□□□□□ -2.37
URB1	YKL014C	XRN1	P22147	1528 aa	Known RBP	0.25	□□□□□ -2.37
URB1	YKL014C	ICP55	P40051	511 aa		0.25	□□□□□ -2.37
URB1	YKL014C	ENV9	Q08651	330 aa		0.24	□□□□□ -2.37
URB1	YKL014C	IRC24	P40580	263 aa		0.24	□□□□□ -2.37
URB1	YKL014C	ULS1	Q08562	1619 aa		0.24	□□□□□ -2.37
URB1	YKL014C	ESP1	Q03018	1630 aa		0.24	□□□□□ -2.37
URB1	YKL014C	DCW1	P36091	449 aa		0.23	□□□□□ -2.37
URB1	YKL014C	GIS1	Q03833	894 aa		0.23	□□□□□ -2.37
URB1	YKL014C	CSF1	Q12150	2958 aa		0.23	□□□□□ -2.37
URB1	YKL014C	PMD1	P32634	1753 aa		0.23	□□□□□ -2.37
URB1	YKL014C	DNF3	Q12674	1656 aa		0.23	□□□□□ -2.37
URB1	YKL014C	ARH1	P48360	493 aa		0.22	□□□□□ -2.37
URB1	YKL014C	PDR5	P33302	1511 aa	Known RBP	0.22	□□□□□ -2.37
URB1	YKL014C	KOG1	P38873	1557 aa		0.22	□□□□□ -2.37
URB1	YKL014C	MAC1	P35192	417 aa		0.22	□□□□□ -2.37
URB1	YKL014C	CAF120	P53836	1060 aa		0.22	□□□□□ -2.37
URB1	YKL014C	MLP2	P40457	1679 aa		0.22	□□□□□ -2.37
URB1	YKL014C	URB1	P34241	1764 aa	Known RBP	0.22	□□□□□ -2.37
URB1	YKL014C	HTA1	P04911	132 aa	Known RBP	0.22	□□□□□ -2.37
URB1	YKL014C	HTA2	P04912	132 aa		0.22	□□□□□ -2.37
URB1	YKL014C	GSC2	P40989	1895 aa		0.21	□□□□□ -2.38
URB1	YKL014C	CDC25	P04821	1589 aa		0.21	□□□□□ -2.38
URB1	YKL014C	RKR1	Q04781	1562 aa		0.21	□□□□□ -2.38
URB1	YKL014C	FKS3	Q04952	1785 aa		0.21	□□□□□ -2.38
URB1	YKL014C	NUP192	P47054	1683 aa		0.21	□□□□□ -2.38

Retrieved 100 of 5,963 RNA–protein pairs in 27.5 ms