RNA–Protein interactions for RNA: YDR498C

SEC20, Transcript of Membrane glycoprotein v-SNARE, yeastyeast

Gene SEC20, Length 1,152 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC20YDR498C ULS1Q08562 1619 aa8.94□□□□□ -0.98
SEC20YDR498C RPA190P10964 1664 aaKnown RBP8.93□□□□□ -0.98
SEC20YDR498C SNQ2P32568 1501 aaKnown RBP8.91□□□□□ -0.98
SEC20YDR498C DNF1P32660 1571 aa8.88□□□□□ -0.99
SEC20YDR498C VTH1P40438 1549 aa8.87□□□□□ -0.99
SEC20YDR498C VTH2P40890 1549 aa8.87□□□□□ -0.99
SEC20YDR498C NTE1Q04958 1679 aa8.86□□□□□ -0.99
SEC20YDR498C SPP41P38904 1435 aa8.86□□□□□ -0.99
SEC20YDR498C RPO21P04050 1733 aaKnown RBP8.85□□□□□ -0.99
SEC20YDR498C PDR15Q04182 1529 aaKnown RBP8.85□□□□□ -0.99
SEC20YDR498C PAN1P32521 1480 aa8.84□□□□□ -0.99
SEC20YDR498C YCK3P39962 524 aa8.83□□□□□ -1
SEC20YDR498C HAA1Q12753 694 aaKnown RBP8.83□□□□□ -1
SEC20YDR498C YRF1-1P0CX20 1796 aa8.79□□□□□ -1
SEC20YDR498C YRF1-5P0CX21 1796 aa8.79□□□□□ -1
SEC20YDR498C YRF1-8P0CX22 1796 aa8.79□□□□□ -1
SEC20YDR498C YBT1P32386 1661 aa8.79□□□□□ -1
SEC20YDR498C TY3B-GQ99315 1547 aa8.79□□□□□ -1
SEC20YDR498C TSC11P40061 1430 aa8.79□□□□□ -1
SEC20YDR498C TRM732Q03496 1420 aa8.78□□□□□ -1
SEC20YDR498C TFA1P36100 482 aa8.77□□□□□ -1.01
SEC20YDR498C SAS10Q12136 610 aaPredicted RBP8.76□□□□□ -1.01
SEC20YDR498C SNT2P53127 1403 aa8.76□□□□□ -1.01
SEC20YDR498C MRPL32P25348 183 aa8.75□□□□□ -1.01
SEC20YDR498C NUP170P38181 1502 aa8.75□□□□□ -1.01
SEC20YDR498C STH1P32597 1359 aa8.74□□□□□ -1.01
SEC20YDR498C IRC20Q06554 1556 aa8.74□□□□□ -1.01
SEC20YDR498C GEA1P47102 1408 aaPredicted RBP8.69□□□□□ -1.02
SEC20YDR498C RQC2Q12532 1038 aaKnown RBP8.68□□□□□ -1.02
SEC20YDR498C SPO14P36126 1683 aa8.66□□□□□ -1.02
SEC20YDR498C NUP159P40477 1460 aa8.62□□□□□ -1.03
SEC20YDR498C SPT21P35209 758 aa8.61□□□□□ -1.03
SEC20YDR498C GEA2P39993 1459 aaKnown RBP8.6□□□□□ -1.03
SEC20YDR498C IKI3Q06706 1349 aaKnown RBP8.57□□□□□ -1.04
SEC20YDR498C GDB1Q06625 1536 aa8.57□□□□□ -1.04
SEC20YDR498C PDR12Q02785 1511 aa8.56□□□□□ -1.04
SEC20YDR498C TAF7Q05021 590 aa8.56□□□□□ -1.04
SEC20YDR498C ARO1P08566 1588 aaKnown RBP8.56□□□□□ -1.04
SEC20YDR498C SSM4P40318 1319 aa8.55□□□□□ -1.04
SEC20YDR498C IFH1P39520 1085 aa8.55□□□□□ -1.04
SEC20YDR498C VPS15P22219 1454 aa8.55□□□□□ -1.04
SEC20YDR498C PDR10P51533 1564 aa8.54□□□□□ -1.04
SEC20YDR498C MET5P47169 1442 aa8.53□□□□□ -1.04
SEC20YDR498C BUD3P25558 1636 aa8.51□□□□□ -1.05
SEC20YDR498C CAT8P39113 1433 aa8.47□□□□□ -1.05
SEC20YDR498C SEC7P11075 2009 aaKnown RBP8.44□□□□□ -1.06
SEC20YDR498C YKR023WP36119 530 aaKnown RBP8.44□□□□□ -1.06
SEC20YDR498C NUP157P40064 1391 aaKnown RBP8.41□□□□□ -1.06
SEC20YDR498C RIM101P33400 625 aa8.41□□□□□ -1.06
SEC20YDR498C GCN2P15442 1659 aa8.4□□□□□ -1.06
SEC20YDR498C BNI1P41832 1953 aa8.4□□□□□ -1.06
SEC20YDR498C DOP1Q03921 1698 aa8.4□□□□□ -1.07
SEC20YDR498C CHC1P22137 1653 aaKnown RBP8.39□□□□□ -1.07
SEC20YDR498C RTT106P40161 455 aa8.38□□□□□ -1.07
SEC20YDR498C YSP2Q06681 1438 aa8.37□□□□□ -1.07
SEC20YDR498C CDC27P38042 758 aa8.37□□□□□ -1.07
SEC20YDR498C SRB8P25648 1427 aa8.35□□□□□ -1.07
SEC20YDR498C IQG1Q12280 1495 aa8.34□□□□□ -1.07
SEC20YDR498C MET10P39692 1035 aa8.34□□□□□ -1.07
SEC20YDR498C YOR093CQ12275 1648 aa8.32□□□□□ -1.08
SEC20YDR498C HOP09932 586 aa8.31□□□□□ -1.08
SEC20YDR498C VMR1P38735 1592 aa8.29□□□□□ -1.08
SEC20YDR498C LTE1P07866 1435 aa8.29□□□□□ -1.08
SEC20YDR498C DCD1P06773 312 aa8.27□□□□□ -1.09
SEC20YDR498C TFC8Q12308 588 aa8.27□□□□□ -1.09
SEC20YDR498C YGL015CP33199 130 aa8.25□□□□□ -1.09
SEC20YDR498C CKB1P43639 278 aa8.25□□□□□ -1.09
SEC20YDR498C PDR5P33302 1511 aaKnown RBP8.24□□□□□ -1.09
SEC20YDR498C NUP188P52593 1655 aaKnown RBP8.24□□□□□ -1.09
SEC20YDR498C MMS1Q06211 1407 aa8.2□□□□□ -1.1
SEC20YDR498C DNF2Q12675 1612 aa8.19□□□□□ -1.1
SEC20YDR498C TRM3Q07527 1436 aa8.19□□□□□ -1.1
SEC20YDR498C BNR1P40450 1375 aa8.17□□□□□ -1.1
SEC20YDR498C PDR11P40550 1411 aa8.17□□□□□ -1.1
SEC20YDR498C NUP192P47054 1683 aa8.17□□□□□ -1.1
SEC20YDR498C OXP1P28273 1286 aa8.16□□□□□ -1.1
SEC20YDR498C DRS2P39524 1355 aa8.15□□□□□ -1.1
SEC20YDR498C ITT1Q04638 464 aa8.12□□□□□ -1.11
SEC20YDR498C BUD21Q08492 214 aaPredicted RBP8.12□□□□□ -1.11
SEC20YDR498C IML1P47170 1584 aa8.12□□□□□ -1.11
SEC20YDR498C YIL055CP40523 627 aaKnown RBP8.1□□□□□ -1.11
SEC20YDR498C PTP3P40048 928 aa8.08□□□□□ -1.12
SEC20YDR498C MAP2P38174 421 aaKnown RBP8.07□□□□□ -1.12
SEC20YDR498C UBP10P53874 792 aaPredicted RBP8.05□□□□□ -1.12
SEC20YDR498C YAH1Q12184 172 aaKnown RBP8.05□□□□□ -1.12
SEC20YDR498C DNF3Q12674 1656 aa8.03□□□□□ -1.12
SEC20YDR498C BCH2P36122 765 aa8.03□□□□□ -1.12
SEC20YDR498C RAV1P47104 1357 aa8.02□□□□□ -1.13
SEC20YDR498C TY3B-IQ7LHG5 1498 aaKnown RBP8.01□□□□□ -1.13
SEC20YDR498C SCY1P53009 804 aa8□□□□□ -1.13
SEC20YDR498C MLP1Q02455 1875 aaKnown RBP7.96□□□□□ -1.13
SEC20YDR498C USO1P25386 1790 aa7.96□□□□□ -1.14
SEC20YDR498C TYS1P36421 394 aaKnown RBP7.95□□□□□ -1.14
SEC20YDR498C RTC1Q08281 1341 aa7.95□□□□□ -1.14
SEC20YDR498C RSM7P47150 247 aa7.94□□□□□ -1.14
SEC20YDR498C NOP7P53261 605 aaKnown RBP7.93□□□□□ -1.14
SEC20YDR498C HAP1P0CE41 1502 aa7.92□□□□□ -1.14
SEC20YDR498C POL5P39985 1022 aaKnown RBP7.91□□□□□ -1.14
SEC20YDR498C SSP1P38871 571 aa7.9□□□□□ -1.14
SEC20YDR498C YLR419WQ06698 1435 aaKnown RBP7.89□□□□□ -1.15
Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms