RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeastyeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPT3YDR394W POL1P13382 1468 aa9.21□□□□□ -0.93
RPT3YDR394W TIF11P38912 153 aaKnown RBP9.2□□□□□ -0.94
RPT3YDR394W YOL036WQ08206 761 aa9.19□□□□□ -0.94
RPT3YDR394W SAM3Q08986 587 aa9.18□□□□□ -0.94
RPT3YDR394W MDS3P53094 1487 aa9.17□□□□□ -0.94
RPT3YDR394W MSB4Q12317 492 aa9.17□□□□□ -0.94
RPT3YDR394W PEP1P32319 1579 aa9.16□□□□□ -0.94
RPT3YDR394W MAK11P20484 414 aaKnown RBP9.15□□□□□ -0.94
RPT3YDR394W SET4P42948 560 aa9.15□□□□□ -0.94
RPT3YDR394W MMS22Q06164 1454 aa9.15□□□□□ -0.95
RPT3YDR394W YTA7P40340 1379 aa9.14□□□□□ -0.95
RPT3YDR394W STU1P38198 1513 aa9.13□□□□□ -0.95
RPT3YDR394W ULI1P43604 169 aa9.12□□□□□ -0.95
RPT3YDR394W SCC2Q04002 1493 aa9.1□□□□□ -0.95
RPT3YDR394W IOC2Q12072 812 aa9.1□□□□□ -0.95
RPT3YDR394W RPO31P04051 1460 aa9.09□□□□□ -0.95
RPT3YDR394W EAP1P36041 632 aaKnown RBP9.08□□□□□ -0.96
RPT3YDR394W LDB19Q12502 818 aa9.07□□□□□ -0.96
RPT3YDR394W EDS1P38073 919 aa9.06□□□□□ -0.96
RPT3YDR394W YOR1P53049 1477 aa9.06□□□□□ -0.96
RPT3YDR394W TRP5P00931 707 aaKnown RBP9.05□□□□□ -0.96
RPT3YDR394W MIF2P35201 549 aa9.05□□□□□ -0.96
RPT3YDR394W FKH1P40466 484 aa9.05□□□□□ -0.96
RPT3YDR394W GYP5Q12344 894 aa9.05□□□□□ -0.96
RPT3YDR394W TOP2P06786 1428 aaKnown RBP9.05□□□□□ -0.96
RPT3YDR394W COQ8P27697 501 aa9.03□□□□□ -0.96
RPT3YDR394W RKR1Q04781 1562 aa9.03□□□□□ -0.96
RPT3YDR394W MYO4P32492 1471 aa9.02□□□□□ -0.96
RPT3YDR394W AIR2Q12476 344 aaKnown RBP9.02□□□□□ -0.97
RPT3YDR394W SMC4Q12267 1418 aa9.02□□□□□ -0.97
RPT3YDR394W UFD4P33202 1483 aa9.01□□□□□ -0.97
RPT3YDR394W ABP1P15891 592 aaKnown RBP9□□□□□ -0.97
RPT3YDR394W YCF1P39109 1515 aaKnown RBP8.99□□□□□ -0.97
RPT3YDR394W PTC3P34221 468 aaKnown RBP8.98□□□□□ -0.97
RPT3YDR394W BPT1P14772 1559 aa8.98□□□□□ -0.97
RPT3YDR394W DCW1P36091 449 aa8.97□□□□□ -0.97
RPT3YDR394W GRE2Q12068 342 aaKnown RBP8.97□□□□□ -0.97
RPT3YDR394W HTA1P04911 132 aaKnown RBP8.94□□□□□ -0.98
RPT3YDR394W HTA2P04912 132 aa8.94□□□□□ -0.98
RPT3YDR394W RTG1P32607 177 aa8.94□□□□□ -0.98
RPT3YDR394W YNL035CP53962 389 aaKnown RBP8.93□□□□□ -0.98
RPT3YDR394W TAF7Q05021 590 aa8.92□□□□□ -0.98
RPT3YDR394W SAS10Q12136 610 aaPredicted RBP8.92□□□□□ -0.98
RPT3YDR394W ATH1P48016 1211 aa8.91□□□□□ -0.98
RPT3YDR394W GUT1P32190 709 aa8.89□□□□□ -0.99
RPT3YDR394W SEC61P32915 480 aa8.88□□□□□ -0.99
RPT3YDR394W YEL023CP39992 682 aa8.88□□□□□ -0.99
RPT3YDR394W DAN4P47179 1161 aa8.88□□□□□ -0.99
RPT3YDR394W NOP53Q12080 455 aaKnown RBP8.88□□□□□ -0.99
RPT3YDR394W JIP4Q03361 876 aa8.87□□□□□ -0.99
RPT3YDR394W SNQ2P32568 1501 aaKnown RBP8.85□□□□□ -0.99
RPT3YDR394W YJL171CP46992 396 aa8.85□□□□□ -0.99
RPT3YDR394W NCR1Q12200 1170 aa8.85□□□□□ -0.99
RPT3YDR394W STH1P32597 1359 aa8.85□□□□□ -0.99
RPT3YDR394W SET1P38827 1080 aaKnown RBP8.84□□□□□ -0.99
RPT3YDR394W PTC4P38089 393 aa8.83□□□□□ -1
RPT3YDR394W NST1P53935 1240 aa8.83□□□□□ -1
RPT3YDR394W SPP41P38904 1435 aa8.82□□□□□ -1
RPT3YDR394W SOL3P38858 249 aa8.82□□□□□ -1
RPT3YDR394W TY2B-LR1P0C2J3 1770 aa8.81□□□□□ -1
RPT3YDR394W TY2B-FP0CX63 1770 aa8.81□□□□□ -1
RPT3YDR394W TY2B-GR2P0CX64 1770 aa8.81□□□□□ -1
RPT3YDR394W TY2B-CP25384 1770 aa8.81□□□□□ -1
RPT3YDR394W TY2B-DR2Q03494 1770 aa8.81□□□□□ -1
RPT3YDR394W TY1B-DR1Q03855 1755 aa8.81□□□□□ -1
RPT3YDR394W TY2B-DR3Q07791 1770 aaKnown RBP8.81□□□□□ -1
RPT3YDR394W TY2B-OR1Q12113 1770 aa8.81□□□□□ -1
RPT3YDR394W TY2B-DR1Q12472 1770 aa8.81□□□□□ -1
RPT3YDR394W TY2B-OR2Q12501 1770 aa8.81□□□□□ -1
RPT3YDR394W BMT6Q12291 365 aa8.81□□□□□ -1
RPT3YDR394W TRM732Q03496 1420 aa8.8□□□□□ -1
RPT3YDR394W IKI3Q06706 1349 aaKnown RBP8.8□□□□□ -1
RPT3YDR394W TY1B-DR3Q99231 1755 aa8.77□□□□□ -1.01
RPT3YDR394W TSC11P40061 1430 aa8.77□□□□□ -1.01
RPT3YDR394W TFG1P41895 735 aaPredicted RBP8.75□□□□□ -1.01
RPT3YDR394W YDL129WQ07555 291 aa8.74□□□□□ -1.01
RPT3YDR394W PAN1P32521 1480 aa8.74□□□□□ -1.01
RPT3YDR394W TY2B-BQ12491 1770 aa8.73□□□□□ -1.01
RPT3YDR394W YGR273CP53329 174 aa8.73□□□□□ -1.01
RPT3YDR394W RQC2Q12532 1038 aaKnown RBP8.73□□□□□ -1.01
RPT3YDR394W VTH1P40438 1549 aa8.73□□□□□ -1.01
RPT3YDR394W VTH2P40890 1549 aa8.73□□□□□ -1.01
RPT3YDR394W CDC25P04821 1589 aa8.73□□□□□ -1.01
RPT3YDR394W ILV3P39522 585 aaKnown RBP8.72□□□□□ -1.01
RPT3YDR394W GEA1P47102 1408 aaPredicted RBP8.71□□□□□ -1.01
RPT3YDR394W PDR15Q04182 1529 aaKnown RBP8.71□□□□□ -1.01
RPT3YDR394W MPH3P0CE00 602 aa8.71□□□□□ -1.02
RPT3YDR394W SAP30P38429 201 aa8.71□□□□□ -1.02
RPT3YDR394W SNT2P53127 1403 aa8.71□□□□□ -1.02
RPT3YDR394W AI4P03878 556 aa8.7□□□□□ -1.02
RPT3YDR394W NUP170P38181 1502 aa8.7□□□□□ -1.02
RPT3YDR394W PML39Q03760 334 aa8.69□□□□□ -1.02
RPT3YDR394W TY1B-HO13535 1793 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-DR5P0C2I2 1755 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-DR6P0C2I3 1755 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-LR2P0C2I5 1755 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-LR3P0C2I6 1755 aaKnown RBP8.68□□□□□ -1.02
RPT3YDR394W TY1B-PR1P0C2I9 1755 aaKnown RBP8.68□□□□□ -1.02
RPT3YDR394W TY1B-PR2P0C2J0 1756 aa8.68□□□□□ -1.02
RPT3YDR394W TY1B-PR3P0C2J1 1755 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 5,963 RNA–protein pairs in 8.6 ms