RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIR4	YDR227W	TY1B-DR6	P0C2I3	1755 aa		3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-LR2	P0C2I5	1755 aa		3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-PR2	P0C2J0	1756 aa		3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-JR1	P47098	1755 aa		3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-ML2	Q03434	1755 aa	Known RBP	3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-ER1	Q03612	1755 aa		3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-ML1	Q04711	1755 aa	Known RBP	3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-GR2	Q12269	1755 aa		3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-OL	Q12273	1755 aa		3.34	□□□□□ -1.88
SIR4	YDR227W	TY1B-PL	Q12414	1755 aa	Known RBP	3.34	□□□□□ -1.88
SIR4	YDR227W	CHD1	P32657	1468 aa		3.33	□□□□□ -1.88
SIR4	YDR227W	HAP1	P0CE41	1502 aa		3.33	□□□□□ -1.88
SIR4	YDR227W	RPS9B	P05755	195 aa	Known RBP	3.33	□□□□□ -1.88
SIR4	YDR227W	RPG1	P38249	964 aa	Known RBP	3.33	□□□□□ -1.88
SIR4	YDR227W	BNI1	P41832	1953 aa		3.32	□□□□□ -1.88
SIR4	YDR227W	ITT1	Q04638	464 aa		3.32	□□□□□ -1.88
SIR4	YDR227W	PAN1	P32521	1480 aa		3.32	□□□□□ -1.88
SIR4	YDR227W	SCC2	Q04002	1493 aa		3.32	□□□□□ -1.88
SIR4	YDR227W	SSA1	P10591	642 aa	Known RBP	3.32	□□□□□ -1.88
SIR4	YDR227W	RRD1	P40454	393 aa	Known RBP	3.32	□□□□□ -1.88
SIR4	YDR227W	ENV9	Q08651	330 aa		3.32	□□□□□ -1.88
SIR4	YDR227W	RPL17A	P05740	184 aa	Known RBP	3.31	□□□□□ -1.88
SIR4	YDR227W	RPL17B	P46990	184 aa	Known RBP	3.31	□□□□□ -1.88
SIR4	YDR227W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	3.3	□□□□□ -1.88	not detected
SIR4	YDR227W	TY1B-NL2	Q99337	1749 aa	Known RBP	3.29	□□□□□ -1.88
SIR4	YDR227W	ATG2	P53855	1592 aa		3.29	□□□□□ -1.88
SIR4	YDR227W	TSR3	Q12094	313 aa	Known RBP	3.28	□□□□□ -1.88
SIR4	YDR227W	UFD4	P33202	1483 aa		3.28	□□□□□ -1.89
SIR4	YDR227W	MYO4	P32492	1471 aa		3.27	□□□□□ -1.89
SIR4	YDR227W	SSN2	P38931	1420 aa		3.27	□□□□□ -1.89
SIR4	YDR227W	MMS22	Q06164	1454 aa		3.27	□□□□□ -1.89
SIR4	YDR227W	DOP1	Q03921	1698 aa		3.26	□□□□□ -1.89
SIR4	YDR227W	DCD1	P06773	312 aa		3.26	□□□□□ -1.89
SIR4	YDR227W	BRL1	P38770	471 aa		3.24	□□□□□ -1.89
SIR4	YDR227W	SPP41	P38904	1435 aa		3.24	□□□□□ -1.89
SIR4	YDR227W	YMR074C	Q04773	145 aa		3.24	□□□□□ -1.89
SIR4	YDR227W	NUP159	P40477	1460 aa		3.24	□□□□□ -1.89
SIR4	YDR227W	YOR1	P53049	1477 aa		3.23	□□□□□ -1.89
SIR4	YDR227W	SKI3	P17883	1432 aa	Known RBP	3.23	□□□□□ -1.89
SIR4	YDR227W	GLN1	P32288	370 aa	Known RBP	3.22	□□□□□ -1.89
SIR4	YDR227W	UGA2	P38067	497 aa		3.22	□□□□□ -1.89
SIR4	YDR227W	NOP7	P53261	605 aa	Known RBP	3.22	□□□□□ -1.89
SIR4	YDR227W	SNT2	P53127	1403 aa		3.22	□□□□□ -1.89
SIR4	YDR227W	REB1	P21538	810 aa		3.21	□□□□□ -1.9
SIR4	YDR227W	TY1B-JR2	P47100	1755 aa	Known RBP	3.21	□□□□□ -1.9
SIR4	YDR227W	TY1B-ER2	Q03619	1755 aa		3.21	□□□□□ -1.9
SIR4	YDR227W	TY1B-MR1	Q04214	1755 aa		3.21	□□□□□ -1.9
SIR4	YDR227W	TY1B-MR2	Q04670	1755 aa	Known RBP	3.21	□□□□□ -1.9
SIR4	YDR227W	TY1B-LR1	Q12088	1755 aa	Known RBP	3.21	□□□□□ -1.9
SIR4	YDR227W	TY1B-NL1	Q12112	1755 aa		3.21	□□□□□ -1.9
SIR4	YDR227W	TY1B-GR1	Q12141	1755 aa		3.21	□□□□□ -1.9
SIR4	YDR227W	TY1B-BL	Q12490	1755 aa		3.21	□□□□□ -1.9
SIR4	YDR227W	STU1	P38198	1513 aa		3.21	□□□□□ -1.9
SIR4	YDR227W	UBP9	P39967	754 aa		3.21	□□□□□ -1.9
SIR4	YDR227W	RLF2	Q12495	606 aa		3.21	□□□□□ -1.9
SIR4	YDR227W	UBP10	P53874	792 aa	Predicted RBP	3.2	□□□□□ -1.9
SIR4	YDR227W	GDB1	Q06625	1536 aa		3.2	□□□□□ -1.9
SIR4	YDR227W	SPT7	P35177	1332 aa		3.2	□□□□□ -1.9
SIR4	YDR227W	XRN1	P22147	1528 aa	Known RBP	3.19	□□□□□ -1.9
SIR4	YDR227W	MET10	P39692	1035 aa		3.19	□□□□□ -1.9
SIR4	YDR227W	TY3B-G	Q99315	1547 aa		3.19	□□□□□ -1.9
SIR4	YDR227W	CFT1	Q06632	1357 aa	Known RBP	3.19	□□□□□ -1.9
SIR4	YDR227W	YCK3	P39962	524 aa		3.19	□□□□□ -1.9
SIR4	YDR227W	SMC4	Q12267	1418 aa		3.19	□□□□□ -1.9
SIR4	YDR227W	KIN1	P13185	1064 aa		3.18	□□□□□ -1.9
SIR4	YDR227W	PEX21	P50091	288 aa		3.18	□□□□□ -1.9
SIR4	YDR227W	DUS1	P53759	423 aa	Known RBP	3.18	□□□□□ -1.9
SIR4	YDR227W	EAR1	Q03212	550 aa		3.18	□□□□□ -1.9
SIR4	YDR227W	BUD31	P25337	157 aa	Predicted RBP	3.17	□□□□□ -1.9
SIR4	YDR227W	YKR023W	P36119	530 aa	Known RBP	3.17	□□□□□ -1.9
SIR4	YDR227W	STH1	P32597	1359 aa		3.17	□□□□□ -1.9
SIR4	YDR227W	DNF3	Q12674	1656 aa		3.17	□□□□□ -1.9
SIR4	YDR227W	YML020W	Q03722	664 aa		3.17	□□□□□ -1.9
SIR4	YDR227W	IQG1	Q12280	1495 aa		3.16	□□□□□ -1.9
SIR4	YDR227W	NAP1	P25293	417 aa	Known RBP	3.16	□□□□□ -1.9
SIR4	YDR227W	YIL055C	P40523	627 aa	Known RBP	3.16	□□□□□ -1.9
SIR4	YDR227W	YJR008W	P47085	338 aa		3.15	□□□□□ -1.91
SIR4	YDR227W	MAK10	Q02197	733 aa		3.15	□□□□□ -1.91
SIR4	YDR227W	HO	P09932	586 aa		3.14	□□□□□ -1.91
SIR4	YDR227W	TIF4632	P39936	914 aa	Known RBP	3.14	□□□□□ -1.91
SIR4	YDR227W	YLR326W	Q06170	240 aa	Known RBP	3.14	□□□□□ -1.91
SIR4	YDR227W	PDR10	P51533	1564 aa		3.14	□□□□□ -1.91
SIR4	YDR227W	CHC1	P22137	1653 aa	Known RBP	3.14	□□□□□ -1.91
SIR4	YDR227W	RPN1	P38764	993 aa	Known RBP	3.14	□□□□□ -1.91
SIR4	YDR227W	SPO14	P36126	1683 aa		3.13	□□□□□ -1.91
SIR4	YDR227W	VPS70	P47161	811 aa		3.13	□□□□□ -1.91
SIR4	YDR227W	ALD2	P47771	506 aa		3.13	□□□□□ -1.91
SIR4	YDR227W	IML1	P47170	1584 aa		3.12	□□□□□ -1.91
SIR4	YDR227W	YAP3	P38749	330 aa		3.12	□□□□□ -1.91
SIR4	YDR227W	RTS3	P53289	263 aa		3.12	□□□□□ -1.91
SIR4	YDR227W	SSP1	P38871	571 aa		3.12	□□□□□ -1.91
SIR4	YDR227W	HGH1	P48362	394 aa	Known RBP	3.12	□□□□□ -1.91
SIR4	YDR227W	ULS1	Q08562	1619 aa		3.11	□□□□□ -1.91
SIR4	YDR227W	RPL34B	P40525	121 aa	Known RBP	3.11	□□□□□ -1.91
SIR4	YDR227W	NUP157	P40064	1391 aa	Known RBP	3.11	□□□□□ -1.91
SIR4	YDR227W	GEA1	P47102	1408 aa	Predicted RBP	3.1	□□□□□ -1.91
SIR4	YDR227W	SLX8	P40072	274 aa		3.1	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms