RNA–Protein interactions for RNA: YDL139C

SCM3, Transcript of Nonhistone component of centromeric chromatin, yeastyeast

Gene SCM3, Length 672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SCM3YDL139C FKH1P40466 484 aa8.79□□□□□ -1
SCM3YDL139C EDS1P38073 919 aa8.78□□□□□ -1
SCM3YDL139C AIR2Q12476 344 aaKnown RBP8.78□□□□□ -1
SCM3YDL139C XRN1P22147 1528 aaKnown RBP8.78□□□□□ -1
SCM3YDL139C DCW1P36091 449 aa8.76□□□□□ -1.01
SCM3YDL139C COQ8P27697 501 aa8.75□□□□□ -1.01
SCM3YDL139C RTG1P32607 177 aa8.74□□□□□ -1.01
SCM3YDL139C PTC3P34221 468 aaKnown RBP8.72□□□□□ -1.01
SCM3YDL139C GRE2Q12068 342 aaKnown RBP8.72□□□□□ -1.01
SCM3YDL139C HTA1P04911 132 aaKnown RBP8.7□□□□□ -1.02
SCM3YDL139C HTA2P04912 132 aa8.7□□□□□ -1.02
SCM3YDL139C YJL171CP46992 396 aa8.7□□□□□ -1.02
SCM3YDL139C REV3P14284 1504 aa8.7□□□□□ -1.02
SCM3YDL139C ABP1P15891 592 aaKnown RBP8.69□□□□□ -1.02
SCM3YDL139C YNL035CP53962 389 aaKnown RBP8.69□□□□□ -1.02
SCM3YDL139C ATH1P48016 1211 aa8.68□□□□□ -1.02
SCM3YDL139C KOG1P38873 1557 aa8.66□□□□□ -1.02
SCM3YDL139C NCR1Q12200 1170 aa8.66□□□□□ -1.02
SCM3YDL139C YEL023CP39992 682 aa8.64□□□□□ -1.03
SCM3YDL139C GUT1P32190 709 aa8.62□□□□□ -1.03
SCM3YDL139C SEC61P32915 480 aa8.62□□□□□ -1.03
SCM3YDL139C DAN4P47179 1161 aa8.62□□□□□ -1.03
SCM3YDL139C JIP4Q03361 876 aa8.61□□□□□ -1.03
SCM3YDL139C BMT6Q12291 365 aa8.61□□□□□ -1.03
SCM3YDL139C SIN3P22579 1536 aa8.6□□□□□ -1.03
SCM3YDL139C SSK2P53599 1579 aa8.6□□□□□ -1.03
SCM3YDL139C PTC4P38089 393 aa8.59□□□□□ -1.03
SCM3YDL139C ATG2P53855 1592 aa8.59□□□□□ -1.03
SCM3YDL139C SET1P38827 1080 aaKnown RBP8.58□□□□□ -1.04
SCM3YDL139C TFG1P41895 735 aaPredicted RBP8.57□□□□□ -1.04
SCM3YDL139C TAF2P23255 1407 aa8.56□□□□□ -1.04
SCM3YDL139C SOL3P38858 249 aa8.55□□□□□ -1.04
SCM3YDL139C ESP1Q03018 1630 aa8.54□□□□□ -1.04
SCM3YDL139C NOP53Q12080 455 aaKnown RBP8.54□□□□□ -1.04
SCM3YDL139C THO2P53552 1597 aaKnown RBP8.53□□□□□ -1.04
SCM3YDL139C PEP1P32319 1579 aa8.52□□□□□ -1.05
SCM3YDL139C SAP30P38429 201 aa8.51□□□□□ -1.05
SCM3YDL139C NST1P53935 1240 aa8.51□□□□□ -1.05
SCM3YDL139C ECM5Q03214 1411 aa8.49□□□□□ -1.05
SCM3YDL139C YDL129WQ07555 291 aa8.49□□□□□ -1.05
SCM3YDL139C PML39Q03760 334 aa8.48□□□□□ -1.05
SCM3YDL139C BUD4P47136 1447 aa8.47□□□□□ -1.05
SCM3YDL139C YGR273CP53329 174 aa8.46□□□□□ -1.06
SCM3YDL139C MDS3P53094 1487 aa8.45□□□□□ -1.06
SCM3YDL139C ILV3P39522 585 aaKnown RBP8.44□□□□□ -1.06
SCM3YDL139C MPH3P0CE00 602 aa8.43□□□□□ -1.06
SCM3YDL139C AI4P03878 556 aa8.42□□□□□ -1.06
SCM3YDL139C MID1P41821 548 aa8.42□□□□□ -1.06
SCM3YDL139C YDR344CQ05510 147 aa8.38□□□□□ -1.07
SCM3YDL139C TY2B-LR1P0C2J3 1770 aa8.36□□□□□ -1.07
SCM3YDL139C TY2B-FP0CX63 1770 aa8.36□□□□□ -1.07
SCM3YDL139C TY2B-GR2P0CX64 1770 aa8.36□□□□□ -1.07
SCM3YDL139C TY2B-CP25384 1770 aa8.36□□□□□ -1.07
SCM3YDL139C TY2B-DR2Q03494 1770 aa8.36□□□□□ -1.07
SCM3YDL139C TY1B-DR1Q03855 1755 aa8.36□□□□□ -1.07
SCM3YDL139C TY2B-DR3Q07791 1770 aaKnown RBP8.36□□□□□ -1.07
SCM3YDL139C TY2B-OR1Q12113 1770 aa8.36□□□□□ -1.07
SCM3YDL139C TY2B-DR1Q12472 1770 aa8.36□□□□□ -1.07
SCM3YDL139C TY2B-OR2Q12501 1770 aa8.36□□□□□ -1.07
SCM3YDL139C VHR2P40041 505 aa8.34□□□□□ -1.07
SCM3YDL139C SAS10Q12136 610 aaPredicted RBP8.34□□□□□ -1.07
SCM3YDL139C SKI3P17883 1432 aaKnown RBP8.34□□□□□ -1.07
SCM3YDL139C MYO2P19524 1574 aaKnown RBP8.34□□□□□ -1.07
SCM3YDL139C KEX1P09620 729 aa8.33□□□□□ -1.08
SCM3YDL139C PEX29Q03370 554 aa8.33□□□□□ -1.08
SCM3YDL139C PRE3P38624 215 aa8.32□□□□□ -1.08
SCM3YDL139C IFH1P39520 1085 aa8.32□□□□□ -1.08
SCM3YDL139C TY1B-DR3Q99231 1755 aa8.31□□□□□ -1.08
SCM3YDL139C SLI15P38283 698 aa8.31□□□□□ -1.08
SCM3YDL139C ELP4Q02884 456 aaKnown RBP8.31□□□□□ -1.08
SCM3YDL139C SCC2Q04002 1493 aa8.31□□□□□ -1.08
SCM3YDL139C CHL1P22516 861 aaPredicted RBP8.3□□□□□ -1.08
SCM3YDL139C UBP14P38237 781 aaKnown RBP8.3□□□□□ -1.08
SCM3YDL139C VPS70P47161 811 aa8.3□□□□□ -1.08
SCM3YDL139C YLR326WQ06170 240 aaKnown RBP8.3□□□□□ -1.08
SCM3YDL139C YPR148CQ06523 435 aa8.29□□□□□ -1.08
SCM3YDL139C BPT1P14772 1559 aa8.28□□□□□ -1.08
SCM3YDL139C YPK9Q12697 1472 aa8.28□□□□□ -1.08
SCM3YDL139C TY2B-BQ12491 1770 aa8.27□□□□□ -1.09
SCM3YDL139C ARH1P48360 493 aa8.25□□□□□ -1.09
SCM3YDL139C MPC54Q08550 464 aa8.25□□□□□ -1.09
SCM3YDL139C TY1B-BRQ12193 1756 aa8.24□□□□□ -1.09
SCM3YDL139C TY1B-GR3Q12316 1755 aa8.24□□□□□ -1.09
SCM3YDL139C TY1B-ORQ92393 1755 aa8.24□□□□□ -1.09
SCM3YDL139C STU1P38198 1513 aa8.24□□□□□ -1.09
SCM3YDL139C PCS60P38137 543 aaKnown RBP RIP-Chip data8.23□□□□□ -1.09not detected
SCM3YDL139C POL1P13382 1468 aa8.23□□□□□ -1.09
SCM3YDL139C RKR1Q04781 1562 aa8.22□□□□□ -1.09
SCM3YDL139C RAD54P32863 898 aa8.22□□□□□ -1.09
SCM3YDL139C REF2P42073 533 aaPredicted RBP8.21□□□□□ -1.1
SCM3YDL139C YCF1P39109 1515 aaKnown RBP8.2□□□□□ -1.1
SCM3YDL139C HAP5Q02516 242 aa8.2□□□□□ -1.1
SCM3YDL139C YDR090CQ03193 310 aa8.2□□□□□ -1.1
SCM3YDL139C CDC73Q06697 393 aa8.2□□□□□ -1.1
SCM3YDL139C TY1B-HO13535 1793 aa8.2□□□□□ -1.1
SCM3YDL139C TY1B-DR5P0C2I2 1755 aa8.2□□□□□ -1.1
SCM3YDL139C TY1B-DR6P0C2I3 1755 aa8.2□□□□□ -1.1
SCM3YDL139C TY1B-LR2P0C2I5 1755 aa8.2□□□□□ -1.1
SCM3YDL139C TY1B-LR3P0C2I6 1755 aaKnown RBP8.2□□□□□ -1.1
SCM3YDL139C TY1B-PR1P0C2I9 1755 aaKnown RBP8.2□□□□□ -1.1
Retrieved 100 of 5,963 RNA–protein pairs in 64.4 ms