RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 MAPKBP1O60336 1514 aa29.13■■■□□ 2.25
SYNGAP1-227ENST00000638142 CFAP43Q8NDM7 1665 aa29.1■■■□□ 2.25
SYNGAP1-227ENST00000638142 SETD5Q9C0A6 1442 aa29.1■■■□□ 2.25
SYNGAP1-227ENST00000638142 PHLDB1Q86UU1 1377 aa29.05■■■□□ 2.24
SYNGAP1-227ENST00000638142 PCF11O94913 1555 aaKnown RBP29.03■■■□□ 2.24
SYNGAP1-227ENST00000638142 FANCD2Q9BXW9 1451 aa29■■■□□ 2.23
SYNGAP1-227ENST00000638142 EFCAB5A4FU69 1503 aa28.97■■■□□ 2.23
SYNGAP1-227ENST00000638142 DNMBPQ6XZF7 1577 aa28.97■■■□□ 2.23
SYNGAP1-227ENST00000638142 ABCA10Q8WWZ4 1543 aa28.95■■■□□ 2.23
SYNGAP1-227ENST00000638142 FYCO1Q9BQS8 1478 aa28.95■■■□□ 2.22
SYNGAP1-227ENST00000638142 CC2D2AQ9P2K1 1620 aa28.93■■■□□ 2.22
SYNGAP1-227ENST00000638142 AQRO60306 1485 aaKnown RBP eCLIP28.92■■■□□ 2.22
SYNGAP1-227ENST00000638142 FAM50AQ14320 339 aaKnown RBP28.91■■■□□ 2.22
SYNGAP1-227ENST00000638142 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.9■■■□□ 2.224e-6■■■■□ 23.1
SYNGAP1-227ENST00000638142 CUL7Q14999 1698 aa28.89■■■□□ 2.22
SYNGAP1-227ENST00000638142 CASKIN1Q8WXD9 1431 aa28.89■■■□□ 2.21
SYNGAP1-227ENST00000638142 TIMELESSQ9UNS1 1208 aa28.88■■■□□ 2.21
SYNGAP1-227ENST00000638142 FHOD3Q2V2M9 1422 aa28.87■■■□□ 2.21
SYNGAP1-227ENST00000638142 POLA1P09884 1462 aaPredicted RBP28.86■■■□□ 2.21
SYNGAP1-227ENST00000638142 TOPBP1Q92547 1522 aa28.86■■■□□ 2.21
SYNGAP1-227ENST00000638142 SUPT16HQ9Y5B9 1047 aaKnown RBP28.85■■■□□ 2.21
SYNGAP1-227ENST00000638142 RAD54L2Q9Y4B4 1467 aa28.85■■■□□ 2.21
SYNGAP1-227ENST00000638142 P3H3Q8IVL6 736 aa28.84■■■□□ 2.21
SYNGAP1-227ENST00000638142 WDR97A6NE52 1622 aa28.83■■■□□ 2.21
SYNGAP1-227ENST00000638142 CTTNBP2Q8WZ74 1663 aa28.83■■■□□ 2.21
SYNGAP1-227ENST00000638142 ATP1B4Q9UN42 357 aaPredicted RBP28.78■■■□□ 2.2
SYNGAP1-227ENST00000638142 FMN1Q68DA7 1419 aa28.77■■■□□ 2.2
SYNGAP1-227ENST00000638142 SIN3AQ96ST3 1273 aa28.77■■■□□ 2.2
SYNGAP1-227ENST00000638142 FGD6Q6ZV73 1430 aa28.7■■■□□ 2.19
SYNGAP1-227ENST00000638142 SNAPC4Q5SXM2 1469 aa28.69■■■□□ 2.18
SYNGAP1-227ENST00000638142 PPP1R15AO75807 674 aaPredicted RBP28.64■■■□□ 2.18
SYNGAP1-227ENST00000638142 NESP48681 1621 aa28.64■■■□□ 2.17
SYNGAP1-227ENST00000638142 DDX10Q13206 875 aaKnown RBP28.64■■■□□ 2.17
SYNGAP1-227ENST00000638142 KCNH8Q96L42 1107 aa28.64■■■□□ 2.17
SYNGAP1-227ENST00000638142 SAMD9Q5K651 1589 aa28.62■■■□□ 2.17
SYNGAP1-227ENST00000638142 MTUS2Q5JR59 1369 aa28.59■■■□□ 2.17
SYNGAP1-227ENST00000638142 HFM1A2PYH4 1435 aa28.59■■■□□ 2.17
SYNGAP1-227ENST00000638142 CCDC18Q5T9S5 1454 aa28.58■■■□□ 2.17
SYNGAP1-227ENST00000638142 LAMC3Q9Y6N6 1575 aa28.58■■■□□ 2.17
SYNGAP1-227ENST00000638142 ABCA5Q8WWZ7 1642 aa28.58■■■□□ 2.17
SYNGAP1-227ENST00000638142 THOC2Q8NI27 1593 aaKnown RBP28.57■■■□□ 2.16
SYNGAP1-227ENST00000638142 URB2Q14146 1524 aaKnown RBP28.56■■■□□ 2.16
SYNGAP1-227ENST00000638142 UACAQ9BZF9 1416 aa28.55■■■□□ 2.16
SYNGAP1-227ENST00000638142 PTPN23Q9H3S7 1636 aa28.53■■■□□ 2.16
SYNGAP1-227ENST00000638142 GRIN2BQ13224 1484 aa28.52■■■□□ 2.16
SYNGAP1-227ENST00000638142 TONSLQ96HA7 1378 aa28.51■■■□□ 2.16
SYNGAP1-227ENST00000638142 CCER2I3L3R5 266 aa28.51■■■□□ 2.15
SYNGAP1-227ENST00000638142 LRRIQ1Q96JM4 1722 aa28.5■■■□□ 2.15
SYNGAP1-227ENST00000638142 MYOM3Q5VTT5 1437 aa28.5■■■□□ 2.15
SYNGAP1-227ENST00000638142 PTPRKQ15262 1439 aa28.5■■■□□ 2.15
SYNGAP1-227ENST00000638142 NCOA2Q15596 1464 aa28.49■■■□□ 2.15
SYNGAP1-227ENST00000638142 GAPVD1Q14C86 1478 aa28.49■■■□□ 2.15
SYNGAP1-227ENST00000638142 EHBP1L1Q8N3D4 1523 aa28.48■■■□□ 2.15
SYNGAP1-227ENST00000638142 SUPT6HQ7KZ85 1726 aaKnown RBP28.48■■■□□ 2.15
SYNGAP1-227ENST00000638142 NAIPQ13075 1403 aa28.45■■■□□ 2.15
SYNGAP1-227ENST00000638142 TSHZ2Q9NRE2 1034 aa28.45■■■□□ 2.15
SYNGAP1-227ENST00000638142 KIF21AQ7Z4S6 1674 aa28.45■■■□□ 2.14
SYNGAP1-227ENST00000638142 TDRD9Q8NDG6 1382 aaKnown RBP28.45■■■□□ 2.14
SYNGAP1-227ENST00000638142 ANP32CO43423 234 aa28.43■■■□□ 2.14
SYNGAP1-227ENST00000638142 UGGT2Q9NYU1 1516 aa28.39■■■□□ 2.13
SYNGAP1-227ENST00000638142 HIRIP3Q9BW71 556 aaPredicted RBP28.38■■■□□ 2.13
SYNGAP1-227ENST00000638142 ARHGEF11O15085 1522 aa28.38■■■□□ 2.13
SYNGAP1-227ENST00000638142 PDS5BQ9NTI5 1447 aa28.37■■■□□ 2.13
SYNGAP1-227ENST00000638142 TCOF1Q13428 1488 aaKnown RBP28.31■■■□□ 2.12
SYNGAP1-227ENST00000638142 KDM5BQ9UGL1 1544 aa28.3■■■□□ 2.12
SYNGAP1-227ENST00000638142 FKBP8Q14318 412 aa28.29■■■□□ 2.12
SYNGAP1-227ENST00000638142 MAGI3Q5TCQ9 1506 aa28.28■■■□□ 2.12
SYNGAP1-227ENST00000638142 GCC2Q8IWJ2 1684 aa28.27■■■□□ 2.12
SYNGAP1-227ENST00000638142 HECW1Q76N89 1606 aa28.27■■■□□ 2.12
SYNGAP1-227ENST00000638142 AKNAQ7Z591 1439 aa28.26■■■□□ 2.12
SYNGAP1-227ENST00000638142 TARBP1Q13395 1621 aaKnown RBP28.26■■■□□ 2.11
SYNGAP1-227ENST00000638142 NEFLP07196 543 aa28.24■■■□□ 2.11
SYNGAP1-227ENST00000638142 TRIM52Q96A61 297 aa28.2■■■□□ 2.1
SYNGAP1-227ENST00000638142 BCANQ96GW7 911 aa28.19■■■□□ 2.1
SYNGAP1-227ENST00000638142 ANP32EQ9BTT0 268 aa28.18■■■□□ 2.1
SYNGAP1-227ENST00000638142 IQGAP2Q13576 1575 aa28.17■■■□□ 2.1
SYNGAP1-227ENST00000638142 MIA2Q96PC5 1412 aa28.17■■■□□ 2.1
SYNGAP1-227ENST00000638142 EPRSP07814 1512 aaKnown RBP28.16■■■□□ 2.1
SYNGAP1-227ENST00000638142 PBRM1Q86U86 1689 aa28.16■■■□□ 2.1
SYNGAP1-227ENST00000638142 DENND4BO75064 1496 aaPredicted RBP28.14■■■□□ 2.1
SYNGAP1-227ENST00000638142 RRP7BPQ9NSQ0 103 aa28.14■■■□□ 2.09
SYNGAP1-227ENST00000638142 ADAMTS12P58397 1594 aa28.1■■■□□ 2.09
SYNGAP1-227ENST00000638142 WDR62O43379 1518 aa28.09■■■□□ 2.09
SYNGAP1-227ENST00000638142 CHIC2Q9UKJ5 165 aa28.09■■■□□ 2.09
SYNGAP1-227ENST00000638142 KDM6BO15054 1643 aa28.06■■■□□ 2.08
SYNGAP1-227ENST00000638142 CDK13Q14004 1512 aaKnown RBP28.05■■■□□ 2.08
SYNGAP1-227ENST00000638142 HSPA5P11021 654 aaKnown RBP28.04■■■□□ 2.08
SYNGAP1-227ENST00000638142 WASHC2AQ641Q2 1341 aa28.04■■■□□ 2.08
SYNGAP1-227ENST00000638142 MPHOSPH9Q99550 1183 aa28.01■■■□□ 2.08
SYNGAP1-227ENST00000638142 EIF4G2P78344 907 aaKnown RBP eCLIP28.01■■■□□ 2.071e-7■■■■■ 32.2
SYNGAP1-227ENST00000638142 ROCK1Q13464 1354 aa27.98■■■□□ 2.07
SYNGAP1-227ENST00000638142 CNTLNQ9NXG0 1405 aa27.95■■■□□ 2.06
SYNGAP1-227ENST00000638142 HNRNPUQ00839 825 aaKnown RBP eCLIP27.94■■■□□ 2.06
SYNGAP1-227ENST00000638142 DAPK1P53355 1430 aa27.93■■■□□ 2.06
SYNGAP1-227ENST00000638142 L3MBTL2Q969R5 705 aa27.92■■■□□ 2.06
SYNGAP1-227ENST00000638142 MRC2Q9UBG0 1479 aa27.91■■■□□ 2.06
SYNGAP1-227ENST00000638142 DNMT1P26358 1616 aaKnown RBP27.91■■■□□ 2.06
SYNGAP1-227ENST00000638142 RPRD2Q5VT52 1461 aaKnown RBP27.9■■■□□ 2.06
SYNGAP1-227ENST00000638142 NCOA1Q15788 1441 aa27.9■■■□□ 2.06
SYNGAP1-227ENST00000638142 ANKRD30BQ9BXX2 1392 aa27.89■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms