RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 ATF5Q9Y2D1 282 aaPredicted RBP16.47■□□□□ 0.23
SMCHD1-212ENST00000585229 IFT140Q96RY7 1462 aa16.47■□□□□ 0.23
SMCHD1-212ENST00000585229 RAD54L2Q9Y4B4 1467 aa16.47■□□□□ 0.23
SMCHD1-212ENST00000585229 CACNB1Q02641 598 aaPredicted RBP16.45■□□□□ 0.22
SMCHD1-212ENST00000585229 ABCA5Q8WWZ7 1642 aa16.42■□□□□ 0.22
SMCHD1-212ENST00000585229 KIF27Q86VH2 1401 aa16.4■□□□□ 0.22
SMCHD1-212ENST00000585229 RUSC2Q8N2Y8 1516 aa16.4■□□□□ 0.22
SMCHD1-212ENST00000585229 ATXN8OSP0DMR3 200 aa16.38■□□□□ 0.21
SMCHD1-212ENST00000585229 EIF4G3O43432 1585 aaKnown RBP16.34■□□□□ 0.21
SMCHD1-212ENST00000585229 APLP2Q06481 763 aa16.33■□□□□ 0.2
SMCHD1-212ENST00000585229 GAPVD1Q14C86 1478 aa16.32■□□□□ 0.2
SMCHD1-212ENST00000585229 ERICH3Q5RHP9 1530 aa16.32■□□□□ 0.2
SMCHD1-212ENST00000585229 PBRM1Q86U86 1689 aa16.32■□□□□ 0.2
SMCHD1-212ENST00000585229 ZNF608Q9ULD9 1512 aaPredicted RBP16.32■□□□□ 0.2
SMCHD1-212ENST00000585229 CAPN15O75808 1086 aa16.31■□□□□ 0.2
SMCHD1-212ENST00000585229 TDRD9Q8NDG6 1382 aaKnown RBP16.29■□□□□ 0.2
SMCHD1-212ENST00000585229 KIF21BO75037 1637 aa16.29■□□□□ 0.2
SMCHD1-212ENST00000585229 CUL7Q14999 1698 aa16.28■□□□□ 0.2
SMCHD1-212ENST00000585229 IGF1RP08069 1367 aa16.27■□□□□ 0.2
SMCHD1-212ENST00000585229 PRXQ9BXM0 1461 aa16.27■□□□□ 0.19
SMCHD1-212ENST00000585229 AQRO60306 1485 aaKnown RBP eCLIP16.26■□□□□ 0.19
SMCHD1-212ENST00000585229 GRIN2BQ13224 1484 aa16.26■□□□□ 0.19
SMCHD1-212ENST00000585229 TRHP20396 242 aaPredicted RBP16.25■□□□□ 0.19
SMCHD1-212ENST00000585229 FAM9AQ8IZU1 332 aaPredicted RBP16.23■□□□□ 0.19
SMCHD1-212ENST00000585229 ADAMTS12P58397 1594 aa16.21■□□□□ 0.19
SMCHD1-212ENST00000585229 ZNF219Q9P2Y4 722 aaPredicted RBP16.21■□□□□ 0.19
SMCHD1-212ENST00000585229 MAGI1Q96QZ7 1491 aaPredicted RBP16.19■□□□□ 0.18
SMCHD1-212ENST00000585229 CARMIL1Q5VZK9 1371 aa16.18■□□□□ 0.18
SMCHD1-212ENST00000585229 GOLGA3Q08378 1498 aa16.17■□□□□ 0.18
SMCHD1-212ENST00000585229 SNAPC4Q5SXM2 1469 aa16.16■□□□□ 0.18
SMCHD1-212ENST00000585229 RAPGEF2Q9Y4G8 1499 aa16.16■□□□□ 0.18
SMCHD1-212ENST00000585229 FHAD1B1AJZ9 1412 aa16.16■□□□□ 0.18
SMCHD1-212ENST00000585229 DSG3P32926 999 aa16.12■□□□□ 0.17
SMCHD1-212ENST00000585229 SYNJ2O15056 1496 aa16.1■□□□□ 0.17
SMCHD1-212ENST00000585229 ABCB7O75027 752 aa16.07■□□□□ 0.16
SMCHD1-212ENST00000585229 TNIKQ9UKE5 1360 aa16.07■□□□□ 0.16
SMCHD1-212ENST00000585229 GRIN2AQ12879 1464 aa16.06■□□□□ 0.16
SMCHD1-212ENST00000585229 LOC105371045A0A1W2PR82 267 aa16.06■□□□□ 0.16
SMCHD1-212ENST00000585229 CTTNBP2Q8WZ74 1663 aa16.05■□□□□ 0.16
SMCHD1-212ENST00000585229 CHD1O14646 1710 aa16.03■□□□□ 0.16
SMCHD1-212ENST00000585229 POLA2Q14181 598 aa16■□□□□ 0.15
SMCHD1-212ENST00000585229 NUP160Q12769 1436 aa16■□□□□ 0.15
SMCHD1-212ENST00000585229 CEP170Q5SW79 1584 aa15.97■□□□□ 0.15
SMCHD1-212ENST00000585229 UBTFP17480 764 aaKnown RBP15.95■□□□□ 0.14
SMCHD1-212ENST00000585229 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
SMCHD1-212ENST00000585229 KIAA0586Q9BVV6 1533 aa15.94■□□□□ 0.14
SMCHD1-212ENST00000585229 IQGAP2Q13576 1575 aa15.93■□□□□ 0.14
SMCHD1-212ENST00000585229 CEP162Q5TB80 1403 aa15.93■□□□□ 0.14
SMCHD1-212ENST00000585229 CLASP1Q7Z460 1538 aa15.89■□□□□ 0.13
SMCHD1-212ENST00000585229 UGGT2Q9NYU1 1516 aa15.89■□□□□ 0.13
SMCHD1-212ENST00000585229 SAMD9Q5K651 1589 aa15.88■□□□□ 0.13
SMCHD1-212ENST00000585229 EFCAB5A4FU69 1503 aa15.88■□□□□ 0.13
SMCHD1-212ENST00000585229 CLIP1P30622 1438 aa15.86■□□□□ 0.13
SMCHD1-212ENST00000585229 SHROOM2Q13796 1616 aa15.86■□□□□ 0.13
SMCHD1-212ENST00000585229 FBLN2P98095 1184 aa15.85■□□□□ 0.13
SMCHD1-212ENST00000585229 ARHGAP35Q9NRY4 1499 aa15.84■□□□□ 0.13
SMCHD1-212ENST00000585229 ARAP1Q96P48 1450 aa15.8■□□□□ 0.12
SMCHD1-212ENST00000585229 KIAA0556O60303 1618 aa15.79■□□□□ 0.12
SMCHD1-212ENST00000585229 DISP1Q96F81 1524 aa15.78■□□□□ 0.12
SMCHD1-212ENST00000585229 MKRN4PQ13434 485 aaPredicted RBP15.74■□□□□ 0.11
SMCHD1-212ENST00000585229 JPH4Q96JJ6 628 aa15.73■□□□□ 0.11
SMCHD1-212ENST00000585229 VPS8Q8N3P4 1428 aa15.72■□□□□ 0.11
SMCHD1-212ENST00000585229 FHOD3Q2V2M9 1422 aa15.71■□□□□ 0.11
SMCHD1-212ENST00000585229 OSCARQ8IYS5 282 aa15.71■□□□□ 0.11
SMCHD1-212ENST00000585229 CARMIL2Q6F5E8 1435 aa15.7■□□□□ 0.1
SMCHD1-212ENST00000585229 PRG4Q92954 1404 aaPredicted RBP15.69■□□□□ 0.1
SMCHD1-212ENST00000585229 RANGAP1P46060 587 aaPredicted RBP15.67■□□□□ 0.1
SMCHD1-212ENST00000585229 FMN1Q68DA7 1419 aa15.67■□□□□ 0.1
SMCHD1-212ENST00000585229 ERCC6L2Q5T890 1561 aa15.66■□□□□ 0.1
SMCHD1-212ENST00000585229 PCF11O94913 1555 aaKnown RBP15.65■□□□□ 0.1
SMCHD1-212ENST00000585229 ZBTB12Q9Y330 459 aaPredicted RBP15.63■□□□□ 0.09
SMCHD1-212ENST00000585229 FYCO1Q9BQS8 1478 aa15.63■□□□□ 0.09
SMCHD1-212ENST00000585229 CASKIN1Q8WXD9 1431 aa15.62■□□□□ 0.09
SMCHD1-212ENST00000585229 P3H3Q8IVL6 736 aa15.61■□□□□ 0.09
SMCHD1-212ENST00000585229 ABCA8O94911 1581 aa15.59■□□□□ 0.09
SMCHD1-212ENST00000585229 RAPGEF6Q8TEU7 1601 aa15.59■□□□□ 0.09
SMCHD1-212ENST00000585229 MAP3K1Q13233 1512 aa15.58■□□□□ 0.09
SMCHD1-212ENST00000585229 HECW1Q76N89 1606 aa15.57■□□□□ 0.08
SMCHD1-212ENST00000585229 LRRIQ1Q96JM4 1722 aa15.57■□□□□ 0.08
SMCHD1-212ENST00000585229 CFAP43Q8NDM7 1665 aa15.57■□□□□ 0.08
SMCHD1-212ENST00000585229 PTPRGP23470 1445 aa15.55■□□□□ 0.08
SMCHD1-212ENST00000585229 ARHGEF11O15085 1522 aa15.54■□□□□ 0.08
SMCHD1-212ENST00000585229 TIAM1Q13009 1591 aa15.53■□□□□ 0.08
SMCHD1-212ENST00000585229 NUP153P49790 1475 aaKnown RBP15.52■□□□□ 0.08
SMCHD1-212ENST00000585229 PLB1Q6P1J6 1458 aa15.52■□□□□ 0.08
SMCHD1-212ENST00000585229 UHRF1BP1LA0JNW5 1464 aa15.52■□□□□ 0.07
SMCHD1-212ENST00000585229 CCDC18Q5T9S5 1454 aa15.52■□□□□ 0.07
SMCHD1-212ENST00000585229 RIMBP3CA6NJZ7 1639 aa15.51■□□□□ 0.07
SMCHD1-212ENST00000585229 RIMBP3BA6NNM3 1639 aa15.51■□□□□ 0.07
SMCHD1-212ENST00000585229 RIMBP3Q9UFD9 1639 aa15.51■□□□□ 0.07
SMCHD1-212ENST00000585229 ABCC2Q92887 1545 aa15.51■□□□□ 0.07
SMCHD1-212ENST00000585229 UACAQ9BZF9 1416 aa15.51■□□□□ 0.07
SMCHD1-212ENST00000585229 EPRSP07814 1512 aaKnown RBP15.49■□□□□ 0.07
SMCHD1-212ENST00000585229 ADCY10Q96PN6 1610 aa15.46■□□□□ 0.06
SMCHD1-212ENST00000585229 CDK13Q14004 1512 aaKnown RBP15.43■□□□□ 0.06
SMCHD1-212ENST00000585229 KDM5BQ9UGL1 1544 aa15.43■□□□□ 0.06
SMCHD1-212ENST00000585229 LRRC9Q6ZRR7 1453 aa15.42■□□□□ 0.06
SMCHD1-212ENST00000585229 ATP10BO94823 1461 aa15.41■□□□□ 0.06
SMCHD1-212ENST00000585229 EHBP1L1Q8N3D4 1523 aa15.41■□□□□ 0.06
SMCHD1-212ENST00000585229 ZCCHC11Q5TAX3 1644 aaKnown RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms