RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 AEBP2Q6ZN18 517 aaPredicted RBP27.32■■□□□ 1.96
SMCHD1-212ENST00000585229 CHIC1Q5VXU3 224 aa26.56■■□□□ 1.84
SMCHD1-212ENST00000585229 PHF23Q9BUL5 403 aaPredicted RBP23.43■■□□□ 1.34
SMCHD1-212ENST00000585229 NISCHQ9Y2I1 1504 aa23.23■■□□□ 1.31
SMCHD1-212ENST00000585229 SENP3Q9H4L4 574 aaPredicted RBP23.01■■□□□ 1.27
SMCHD1-212ENST00000585229 PLPPR3Q6T4P5 718 aa21.48■■□□□ 1.03
SMCHD1-212ENST00000585229 FOXD1Q16676 465 aa21.46■■□□□ 1.03
SMCHD1-212ENST00000585229 PPP6R1Q9UPN7 881 aa20.68■□□□□ 0.9
SMCHD1-212ENST00000585229 ADRA2BP18089 450 aa20.62■□□□□ 0.89
SMCHD1-212ENST00000585229 CCDC180Q9P1Z9 1646 aa20.5■□□□□ 0.87
SMCHD1-212ENST00000585229 PIAS4Q8N2W9 510 aaPredicted RBP20.17■□□□□ 0.82
SMCHD1-212ENST00000585229 MSH5O43196 834 aa19.69■□□□□ 0.74
SMCHD1-212ENST00000585229 ZCCHC6Q5VYS8 1495 aaKnown RBP19.48■□□□□ 0.71
SMCHD1-212ENST00000585229 ABCC9O60706 1549 aa19.43■□□□□ 0.7
SMCHD1-212ENST00000585229 DCAF1Q9Y4B6 1507 aa19.3■□□□□ 0.68
SMCHD1-212ENST00000585229 MYO15BQ96JP2 1530 aa19.22■□□□□ 0.67
SMCHD1-212ENST00000585229 NACADO15069 1562 aa19.1■□□□□ 0.65
SMCHD1-212ENST00000585229 RB1CC1Q8TDY2 1594 aa18.98■□□□□ 0.63
SMCHD1-212ENST00000585229 PPP4R3CPQ6ZMV5 832 aa18.97■□□□□ 0.63
SMCHD1-212ENST00000585229 DCAF8L2P0C7V8 631 aa18.96■□□□□ 0.63
SMCHD1-212ENST00000585229 MAPK8IP2Q13387 824 aaPredicted RBP18.74■□□□□ 0.59
SMCHD1-212ENST00000585229 SCAF1Q9H7N4 1312 aaKnown RBP18.69■□□□□ 0.58
SMCHD1-212ENST00000585229 SCRIBQ14160 1630 aa18.65■□□□□ 0.58
SMCHD1-212ENST00000585229 UNC13AQ9UPW8 1703 aa18.63■□□□□ 0.57
SMCHD1-212ENST00000585229 KCNA4P22459 653 aa18.56■□□□□ 0.56
SMCHD1-212ENST00000585229 SHROOM4Q9ULL8 1493 aa18.49■□□□□ 0.55
SMCHD1-212ENST00000585229 BICRAQ9NZM4 1560 aa18.42■□□□□ 0.54
SMCHD1-212ENST00000585229 DMRT2Q9Y5R5 561 aa18.42■□□□□ 0.54
SMCHD1-212ENST00000585229 CNKSR2Q8WXI2 1034 aa18.41■□□□□ 0.54
SMCHD1-212ENST00000585229 NCBP3Q53F19 620 aaKnown RBP18.35■□□□□ 0.53
SMCHD1-212ENST00000585229 NPM3O75607 178 aaKnown RBP18.23■□□□□ 0.51
SMCHD1-212ENST00000585229 PABPN1Q86U42 306 aaKnown RBP eCLIP18.17■□□□□ 0.5
SMCHD1-212ENST00000585229 RNF216Q9NWF9 866 aaPredicted RBP18.07■□□□□ 0.48
SMCHD1-212ENST00000585229 POTEDQ86YR6 584 aa18.06■□□□□ 0.48
SMCHD1-212ENST00000585229 HOXD11P31277 338 aaPredicted RBP18.05■□□□□ 0.48
SMCHD1-212ENST00000585229 CECR2Q9BXF3 1484 aa18■□□□□ 0.47
SMCHD1-212ENST00000585229 BAZ1AQ9NRL2 1556 aaPredicted RBP17.97■□□□□ 0.47
SMCHD1-212ENST00000585229 SMARCA4P51532 1647 aa17.93■□□□□ 0.46
SMCHD1-212ENST00000585229 MROH2BQ7Z745 1585 aa17.89■□□□□ 0.45
SMCHD1-212ENST00000585229 EIF4G1Q04637 1599 aaKnown RBP17.87■□□□□ 0.45
SMCHD1-212ENST00000585229 RSF1Q96T23 1441 aaPredicted RBP17.85■□□□□ 0.45
SMCHD1-212ENST00000585229 PEG3Q9GZU2 1588 aa17.8■□□□□ 0.44
SMCHD1-212ENST00000585229 WIZO95785 1651 aa17.72■□□□□ 0.43
SMCHD1-212ENST00000585229 SMARCA2P51531 1590 aa17.7■□□□□ 0.42
SMCHD1-212ENST00000585229 DNAJC5BQ9UF47 199 aa17.69■□□□□ 0.42
SMCHD1-212ENST00000585229 ATAD2BQ9ULI0 1458 aa17.68■□□□□ 0.42
SMCHD1-212ENST00000585229 CC2D2AQ9P2K1 1620 aa17.65■□□□□ 0.42
SMCHD1-212ENST00000585229 SUPT5HO00267 1087 aaKnown RBP17.62■□□□□ 0.41
SMCHD1-212ENST00000585229 HMGXB3Q12766 1538 aa17.61■□□□□ 0.41
SMCHD1-212ENST00000585229 NCAPD3P42695 1498 aa17.6■□□□□ 0.41
SMCHD1-212ENST00000585229 TOP2AP11388 1531 aaKnown RBP17.6■□□□□ 0.41
SMCHD1-212ENST00000585229 SLC4A1APQ9BWU0 796 aaKnown RBP17.59■□□□□ 0.41
SMCHD1-212ENST00000585229 DCAF8L1A6NGE4 600 aa17.54■□□□□ 0.4
SMCHD1-212ENST00000585229 BAZ1BQ9UIG0 1483 aaKnown RBP17.54■□□□□ 0.4
SMCHD1-212ENST00000585229 CCDC88BA6NC98 1476 aa17.34■□□□□ 0.37
SMCHD1-212ENST00000585229 SLC4A2P04920 1241 aa17.27■□□□□ 0.36
SMCHD1-212ENST00000585229 ZBTB22O15209 634 aa17.15■□□□□ 0.34
SMCHD1-212ENST00000585229 PRDM2Q13029 1718 aa17.13■□□□□ 0.33
SMCHD1-212ENST00000585229 CFTRP13569 1480 aa17.12■□□□□ 0.33
SMCHD1-212ENST00000585229 EHMT2Q96KQ7 1210 aa17.1■□□□□ 0.33
SMCHD1-212ENST00000585229 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.1■□□□□ 0.33
SMCHD1-212ENST00000585229 LAMC3Q9Y6N6 1575 aa17.08■□□□□ 0.32
SMCHD1-212ENST00000585229 CADPSQ9ULU8 1353 aa17.08■□□□□ 0.32
SMCHD1-212ENST00000585229 FOXD4L1Q9NU39 408 aa17.03■□□□□ 0.32
SMCHD1-212ENST00000585229 NESP48681 1621 aa16.98■□□□□ 0.31
SMCHD1-212ENST00000585229 CSRNP3Q8WYN3 585 aa16.96■□□□□ 0.31
SMCHD1-212ENST00000585229 RNF39Q9H2S5 420 aa16.95■□□□□ 0.3
SMCHD1-212ENST00000585229 U3KPZ7 1027 aaPredicted RBP16.94■□□□□ 0.3
SMCHD1-212ENST00000585229 FANCD2Q9BXW9 1451 aa16.88■□□□□ 0.29
SMCHD1-212ENST00000585229 PDS5BQ9NTI5 1447 aa16.87■□□□□ 0.29
SMCHD1-212ENST00000585229 KIF21AQ7Z4S6 1674 aa16.86■□□□□ 0.29
SMCHD1-212ENST00000585229 ABCC8Q09428 1581 aa16.85■□□□□ 0.29
SMCHD1-212ENST00000585229 CEP164Q9UPV0 1460 aa16.82■□□□□ 0.28
SMCHD1-212ENST00000585229 WRNQ14191 1432 aaPredicted RBP eCLIP16.8■□□□□ 0.28
SMCHD1-212ENST00000585229 BIVM-ERCC5R4GMW8 1640 aa16.8■□□□□ 0.28
SMCHD1-212ENST00000585229 SYNJ1O43426 1573 aa16.78■□□□□ 0.28
SMCHD1-212ENST00000585229 MYCNP04198 464 aaPredicted RBP16.78■□□□□ 0.28
SMCHD1-212ENST00000585229 TOP2BQ02880 1626 aa16.77■□□□□ 0.27
SMCHD1-212ENST00000585229 CUX1P39880 1505 aa16.76■□□□□ 0.27
SMCHD1-212ENST00000585229 DNMBPQ6XZF7 1577 aa16.75■□□□□ 0.27
SMCHD1-212ENST00000585229 URB2Q14146 1524 aaKnown RBP16.71■□□□□ 0.27
SMCHD1-212ENST00000585229 MRC2Q9UBG0 1479 aa16.71■□□□□ 0.27
SMCHD1-212ENST00000585229 THOC2Q8NI27 1593 aaKnown RBP16.71■□□□□ 0.27
SMCHD1-212ENST00000585229 TOPBP1Q92547 1522 aa16.7■□□□□ 0.26
SMCHD1-212ENST00000585229 ERCC6Q03468 1493 aa16.68■□□□□ 0.26
SMCHD1-212ENST00000585229 WDR62O43379 1518 aa16.67■□□□□ 0.26
SMCHD1-212ENST00000585229 C1QBPQ07021 282 aaKnown RBP16.66■□□□□ 0.26
SMCHD1-212ENST00000585229 TRIM41Q8WV44 630 aa16.65■□□□□ 0.26
SMCHD1-212ENST00000585229 FGD5Q6ZNL6 1462 aa16.61■□□□□ 0.25
SMCHD1-212ENST00000585229 POLA1P09884 1462 aaPredicted RBP16.58■□□□□ 0.24
SMCHD1-212ENST00000585229 WDR97A6NE52 1622 aa16.55■□□□□ 0.24
SMCHD1-212ENST00000585229 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.54■□□□□ 0.24
SMCHD1-212ENST00000585229 HNRNPUL2Q1KMD3 747 aaKnown RBP16.54■□□□□ 0.24
SMCHD1-212ENST00000585229 SAMD1Q6SPF0 538 aaPredicted RBP16.53■□□□□ 0.24
SMCHD1-212ENST00000585229 TARBP1Q13395 1621 aaKnown RBP16.52■□□□□ 0.23
SMCHD1-212ENST00000585229 ABCA10Q8WWZ4 1543 aa16.51■□□□□ 0.23
SMCHD1-212ENST00000585229 CUX2O14529 1486 aa16.51■□□□□ 0.23
SMCHD1-212ENST00000585229 SPINK5Q9NQ38 1064 aaPredicted RBP16.48■□□□□ 0.23
SMCHD1-212ENST00000585229 SOGA1O94964 1423 aa16.47■□□□□ 0.23
SMCHD1-212ENST00000585229 EEA1Q15075 1411 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms