RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-215ENST00000578317 MKRN4PQ13434 485 aaPredicted RBP13.4□□□□□ -0.26
COPS3-215ENST00000578317 WDR62O43379 1518 aa13.4□□□□□ -0.27
COPS3-215ENST00000578317 SLC24A1O60721 1099 aa13.39□□□□□ -0.27
COPS3-215ENST00000578317 DSG3P32926 999 aa13.39□□□□□ -0.27
COPS3-215ENST00000578317 SYNJ1O43426 1573 aa13.39□□□□□ -0.27
COPS3-215ENST00000578317 CACNB1Q02641 598 aaPredicted RBP13.38□□□□□ -0.27
COPS3-215ENST00000578317 BIVM-ERCC5R4GMW8 1640 aa13.35□□□□□ -0.27
COPS3-215ENST00000578317 CUX2O14529 1486 aa13.34□□□□□ -0.27
COPS3-215ENST00000578317 POLA1P09884 1462 aaPredicted RBP13.33□□□□□ -0.27
COPS3-215ENST00000578317 FGD5Q6ZNL6 1462 aa13.33□□□□□ -0.27
COPS3-215ENST00000578317 SOGA1O94964 1423 aa13.33□□□□□ -0.28
COPS3-215ENST00000578317 IFT140Q96RY7 1462 aa13.27□□□□□ -0.28
COPS3-215ENST00000578317 RAD54L2Q9Y4B4 1467 aa13.27□□□□□ -0.29
COPS3-215ENST00000578317 ABCA10Q8WWZ4 1543 aa13.26□□□□□ -0.29
COPS3-215ENST00000578317 FBLN2P98095 1184 aa13.24□□□□□ -0.29
COPS3-215ENST00000578317 EEA1Q15075 1411 aa13.23□□□□□ -0.29
COPS3-215ENST00000578317 KIF27Q86VH2 1401 aa13.23□□□□□ -0.29
COPS3-215ENST00000578317 TARBP1Q13395 1621 aaKnown RBP13.21□□□□□ -0.29
COPS3-215ENST00000578317 TDRD9Q8NDG6 1382 aaKnown RBP13.2□□□□□ -0.3
COPS3-215ENST00000578317 IGF1RP08069 1367 aa13.18□□□□□ -0.3
COPS3-215ENST00000578317 ZBTB12Q9Y330 459 aaPredicted RBP13.18□□□□□ -0.3
COPS3-215ENST00000578317 RUSC2Q8N2Y8 1516 aa13.17□□□□□ -0.3
COPS3-215ENST00000578317 ZNF608Q9ULD9 1512 aaPredicted RBP13.16□□□□□ -0.3
COPS3-215ENST00000578317 AQRO60306 1485 aaKnown RBP eCLIP13.15□□□□□ -0.33e-7■■■■■ 36.6
COPS3-215ENST00000578317 GAPVD1Q14C86 1478 aa13.15□□□□□ -0.3
COPS3-215ENST00000578317 FAM9AQ8IZU1 332 aaPredicted RBP13.15□□□□□ -0.3
COPS3-215ENST00000578317 WDR97A6NE52 1622 aa13.15□□□□□ -0.3
COPS3-215ENST00000578317 SPDYE4A6NLX3 237 aa13.13□□□□□ -0.31
COPS3-215ENST00000578317 GRIN2BQ13224 1484 aa13.11□□□□□ -0.31
COPS3-215ENST00000578317 EIF4G3O43432 1585 aaKnown RBP13.1□□□□□ -0.31
COPS3-215ENST00000578317 ABCA5Q8WWZ7 1642 aa13.09□□□□□ -0.31
COPS3-215ENST00000578317 ERICH3Q5RHP9 1530 aa13.09□□□□□ -0.31
COPS3-215ENST00000578317 CARMIL1Q5VZK9 1371 aa13.08□□□□□ -0.32
COPS3-215ENST00000578317 PRXQ9BXM0 1461 aa13.08□□□□□ -0.32
COPS3-215ENST00000578317 FHAD1B1AJZ9 1412 aa13.04□□□□□ -0.32
COPS3-215ENST00000578317 OSCARQ8IYS5 282 aa13.03□□□□□ -0.32
COPS3-215ENST00000578317 MAGI1Q96QZ7 1491 aaPredicted RBP13.03□□□□□ -0.32
COPS3-215ENST00000578317 PROM2Q8N271 834 aa13.02□□□□□ -0.33
COPS3-215ENST00000578317 RAPGEF2Q9Y4G8 1499 aa13.01□□□□□ -0.33
COPS3-215ENST00000578317 LOC105371045A0A1W2PR82 267 aa13□□□□□ -0.33
COPS3-215ENST00000578317 SNAPC4Q5SXM2 1469 aa12.99□□□□□ -0.33
COPS3-215ENST00000578317 CHMP7Q8WUX9 453 aaPredicted RBP12.99□□□□□ -0.33
COPS3-215ENST00000578317 PBRM1Q86U86 1689 aa12.99□□□□□ -0.33
COPS3-215ENST00000578317 CUL7Q14999 1698 aa12.97□□□□□ -0.33
COPS3-215ENST00000578317 SYNJ2O15056 1496 aa12.97□□□□□ -0.33
COPS3-215ENST00000578317 GOLGA3Q08378 1498 aa12.97□□□□□ -0.33
COPS3-215ENST00000578317 KIF21BO75037 1637 aa12.97□□□□□ -0.33
COPS3-215ENST00000578317 UBTFP17480 764 aaKnown RBP12.95□□□□□ -0.34
COPS3-215ENST00000578317 ADAMTS12P58397 1594 aa12.94□□□□□ -0.34
COPS3-215ENST00000578317 FBXO3Q9UK99 471 aa12.94□□□□□ -0.34
COPS3-215ENST00000578317 TNIKQ9UKE5 1360 aa12.94□□□□□ -0.34
COPS3-215ENST00000578317 GRIN2AQ12879 1464 aa12.92□□□□□ -0.34
COPS3-215ENST00000578317 SPDYE2BA6NHP3 402 aa12.9□□□□□ -0.34
COPS3-215ENST00000578317 SPDYE6P0CI01 402 aa12.9□□□□□ -0.34
COPS3-215ENST00000578317 SPDYE2Q495Y8 402 aa12.9□□□□□ -0.34
COPS3-215ENST00000578317 CHD1O14646 1710 aa12.89□□□□□ -0.35
COPS3-215ENST00000578317 ZNF692Q9BU19 519 aaPredicted RBP12.88□□□□□ -0.35
COPS3-215ENST00000578317 SSUH2Q9Y2M2 353 aa12.88□□□□□ -0.35
COPS3-215ENST00000578317 NUP160Q12769 1436 aa12.88□□□□□ -0.35
COPS3-215ENST00000578317 KIAA0586Q9BVV6 1533 aa12.85□□□□□ -0.35
COPS3-215ENST00000578317 JPH4Q96JJ6 628 aa12.81□□□□□ -0.36
COPS3-215ENST00000578317 CEP170Q5SW79 1584 aa12.79□□□□□ -0.36
COPS3-215ENST00000578317 CLASP1Q7Z460 1538 aa12.77□□□□□ -0.36
COPS3-215ENST00000578317 CEP162Q5TB80 1403 aa12.77□□□□□ -0.37
COPS3-215ENST00000578317 CLIP1P30622 1438 aa12.76□□□□□ -0.37
COPS3-215ENST00000578317 IQGAP2Q13576 1575 aa12.75□□□□□ -0.37
COPS3-215ENST00000578317 UGGT2Q9NYU1 1516 aa12.74□□□□□ -0.37
COPS3-215ENST00000578317 DNAJC5Q9H3Z4 198 aa12.73□□□□□ -0.37
COPS3-215ENST00000578317 RANGAP1P46060 587 aaPredicted RBP12.72□□□□□ -0.37
COPS3-215ENST00000578317 VASPP50552 380 aaPredicted RBP12.72□□□□□ -0.37
COPS3-215ENST00000578317 ARHGAP35Q9NRY4 1499 aa12.71□□□□□ -0.37
COPS3-215ENST00000578317 CARMIL2Q6F5E8 1435 aa12.71□□□□□ -0.38
COPS3-215ENST00000578317 EFCAB5A4FU69 1503 aa12.69□□□□□ -0.38
COPS3-215ENST00000578317 PRG4Q92954 1404 aaPredicted RBP12.69□□□□□ -0.38
COPS3-215ENST00000578317 CTTNBP2Q8WZ74 1663 aa12.69□□□□□ -0.38
COPS3-215ENST00000578317 DISP1Q96F81 1524 aa12.69□□□□□ -0.38
COPS3-215ENST00000578317 P3H3Q8IVL6 736 aa12.67□□□□□ -0.38
COPS3-215ENST00000578317 SHROOM2Q13796 1616 aa12.67□□□□□ -0.38
COPS3-215ENST00000578317 ARAP1Q96P48 1450 aa12.66□□□□□ -0.38
COPS3-215ENST00000578317 SAMD9Q5K651 1589 aa12.65□□□□□ -0.38
COPS3-215ENST00000578317 RBM42Q9BTD8 480 aaKnown RBP12.65□□□□□ -0.38
COPS3-215ENST00000578317 ARHGEF11O15085 1522 aa12.65□□□□□ -0.38
COPS3-215ENST00000578317 ERCC6L2Q5T890 1561 aa12.64□□□□□ -0.39
COPS3-215ENST00000578317 FHOD3Q2V2M9 1422 aa12.63□□□□□ -0.39
COPS3-215ENST00000578317 FMN1Q68DA7 1419 aa12.63□□□□□ -0.39
COPS3-215ENST00000578317 RIMBP3CA6NJZ7 1639 aa12.63□□□□□ -0.39
COPS3-215ENST00000578317 RIMBP3BA6NNM3 1639 aa12.63□□□□□ -0.39
COPS3-215ENST00000578317 RIMBP3Q9UFD9 1639 aa12.63□□□□□ -0.39
COPS3-215ENST00000578317 PTPRGP23470 1445 aa12.62□□□□□ -0.39
COPS3-215ENST00000578317 VPS8Q8N3P4 1428 aa12.62□□□□□ -0.39
COPS3-215ENST00000578317 KIAA0556O60303 1618 aa12.61□□□□□ -0.39
COPS3-215ENST00000578317 AKT1S1Q96B36 256 aa12.59□□□□□ -0.39
COPS3-215ENST00000578317 IFNLR1Q8IU57 520 aaPredicted RBP12.58□□□□□ -0.4
COPS3-215ENST00000578317 CASKIN1Q8WXD9 1431 aa12.56□□□□□ -0.4
COPS3-215ENST00000578317 PLCB2Q00722 1185 aa12.53□□□□□ -0.4
COPS3-215ENST00000578317 TTBK1Q5TCY1 1321 aaPredicted RBP12.53□□□□□ -0.4
COPS3-215ENST00000578317 UACAQ9BZF9 1416 aa12.52□□□□□ -0.4
COPS3-215ENST00000578317 STAG3Q9UJ98 1225 aa12.52□□□□□ -0.4
COPS3-215ENST00000578317 FYCO1Q9BQS8 1478 aa12.51□□□□□ -0.41
COPS3-215ENST00000578317 REM2Q8IYK8 340 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms