RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 TSHZ2Q9NRE2 1034 aa11.58□□□□□ -0.56
VPS53-217ENST00000575100 CFTRP13569 1480 aa11.55□□□□□ -0.56
VPS53-217ENST00000575100 FANCD2Q9BXW9 1451 aa11.55□□□□□ -0.56
VPS53-217ENST00000575100 NPM1P06748 294 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS53-217ENST00000575100 MYCNP04198 464 aaPredicted RBP11.54□□□□□ -0.56
VPS53-217ENST00000575100 TOP2AP11388 1531 aaKnown RBP11.53□□□□□ -0.56
VPS53-217ENST00000575100 PRDM2Q13029 1718 aa11.53□□□□□ -0.56
VPS53-217ENST00000575100 SCAF1Q9H7N4 1312 aaKnown RBP11.52□□□□□ -0.57
VPS53-217ENST00000575100 PELP1Q8IZL8 1130 aaKnown RBP11.51□□□□□ -0.57
VPS53-217ENST00000575100 VASPP50552 380 aaPredicted RBP11.49□□□□□ -0.57
VPS53-217ENST00000575100 IFNLR1Q8IU57 520 aaPredicted RBP11.49□□□□□ -0.57
VPS53-217ENST00000575100 URB2Q14146 1524 aaKnown RBP11.48□□□□□ -0.57
VPS53-217ENST00000575100 TRIM26Q12899 539 aaPredicted RBP11.48□□□□□ -0.57
VPS53-217ENST00000575100 TTBK1Q5TCY1 1321 aaPredicted RBP11.47□□□□□ -0.57
VPS53-217ENST00000575100 TRIM41Q8WV44 630 aa11.47□□□□□ -0.57
VPS53-217ENST00000575100 SPRYD3Q8NCJ5 442 aa11.44□□□□□ -0.58
VPS53-217ENST00000575100 RNF216Q9NWF9 866 aaPredicted RBP11.42□□□□□ -0.58
VPS53-217ENST00000575100 UBTFP17480 764 aaKnown RBP11.41□□□□□ -0.58
VPS53-217ENST00000575100 OSCARQ8IYS5 282 aa11.41□□□□□ -0.58
VPS53-217ENST00000575100 IFT140Q96RY7 1462 aa11.37□□□□□ -0.59
VPS53-217ENST00000575100 HRCP23327 699 aa11.37□□□□□ -0.59
VPS53-217ENST00000575100 RIMBP3CA6NJZ7 1639 aa11.36□□□□□ -0.59
VPS53-217ENST00000575100 RIMBP3BA6NNM3 1639 aa11.36□□□□□ -0.59
VPS53-217ENST00000575100 RIMBP3Q9UFD9 1639 aa11.36□□□□□ -0.59
VPS53-217ENST00000575100 CCDC88BA6NC98 1476 aa11.36□□□□□ -0.59
VPS53-217ENST00000575100 MYT1Q01538 1121 aa11.35□□□□□ -0.59
VPS53-217ENST00000575100 CACNB1Q02641 598 aaPredicted RBP11.34□□□□□ -0.59
VPS53-217ENST00000575100 TOPBP1Q92547 1522 aa11.34□□□□□ -0.59
VPS53-217ENST00000575100 ZNF608Q9ULD9 1512 aaPredicted RBP11.33□□□□□ -0.59
VPS53-217ENST00000575100 ABCC8Q09428 1581 aa11.33□□□□□ -0.6
VPS53-217ENST00000575100 DNMBPQ6XZF7 1577 aa11.31□□□□□ -0.6
VPS53-217ENST00000575100 EIF4G3O43432 1585 aaKnown RBP11.31□□□□□ -0.6
VPS53-217ENST00000575100 ARHGEF11O15085 1522 aa11.29□□□□□ -0.6
VPS53-217ENST00000575100 TARBP1Q13395 1621 aaKnown RBP11.29□□□□□ -0.6
VPS53-217ENST00000575100 PROM2Q8N271 834 aa11.28□□□□□ -0.6
VPS53-217ENST00000575100 DMRT2Q9Y5R5 561 aa11.28□□□□□ -0.6
VPS53-217ENST00000575100 CHD1O14646 1710 aa11.27□□□□□ -0.61
VPS53-217ENST00000575100 ATF5Q9Y2D1 282 aaPredicted RBP11.23□□□□□ -0.61
VPS53-217ENST00000575100 ECM2O94769 699 aaPredicted RBP11.23□□□□□ -0.61
VPS53-217ENST00000575100 WDR97A6NE52 1622 aa11.21□□□□□ -0.61
VPS53-217ENST00000575100 POLA1P09884 1462 aaPredicted RBP11.21□□□□□ -0.62
VPS53-217ENST00000575100 AQRO60306 1485 aaKnown RBP eCLIP11.19□□□□□ -0.62
VPS53-217ENST00000575100 ARAP1Q96P48 1450 aa11.17□□□□□ -0.62
VPS53-217ENST00000575100 SPDYE4A6NLX3 237 aa11.15□□□□□ -0.62
VPS53-217ENST00000575100 RGL2O15211 777 aa11.15□□□□□ -0.62
VPS53-217ENST00000575100 BRPF1P55201 1214 aaPredicted RBP11.15□□□□□ -0.62
VPS53-217ENST00000575100 CLASP1Q7Z460 1538 aa11.14□□□□□ -0.63
VPS53-217ENST00000575100 RAD54L2Q9Y4B4 1467 aa11.13□□□□□ -0.63
VPS53-217ENST00000575100 SOGA1O94964 1423 aa11.12□□□□□ -0.63
VPS53-217ENST00000575100 CYB5RLQ6IPT4 315 aa11.12□□□□□ -0.63
VPS53-217ENST00000575100 FGD5Q6ZNL6 1462 aa11.11□□□□□ -0.63
VPS53-217ENST00000575100 SNAPC4Q5SXM2 1469 aa11.1□□□□□ -0.63
VPS53-217ENST00000575100 MAGI1Q96QZ7 1491 aaPredicted RBP11.1□□□□□ -0.63
VPS53-217ENST00000575100 CUX1P39880 1505 aa11.1□□□□□ -0.63
VPS53-217ENST00000575100 SYNJ1O43426 1573 aa11.1□□□□□ -0.63
VPS53-217ENST00000575100 TDRD9Q8NDG6 1382 aaKnown RBP11.09□□□□□ -0.63
VPS53-217ENST00000575100 PBRM1Q86U86 1689 aa11.08□□□□□ -0.64
VPS53-217ENST00000575100 GRIN2BQ13224 1484 aa11.07□□□□□ -0.64
VPS53-217ENST00000575100 SYNJ2O15056 1496 aa11.05□□□□□ -0.64
VPS53-217ENST00000575100 HOXD11P31277 338 aaPredicted RBP11.04□□□□□ -0.64
VPS53-217ENST00000575100 ABCA5Q8WWZ7 1642 aa11.03□□□□□ -0.64
VPS53-217ENST00000575100 CHGAP10645 457 aaKnown RBP11.03□□□□□ -0.64
VPS53-217ENST00000575100 SPOCK2Q92563 424 aa11.03□□□□□ -0.64
VPS53-217ENST00000575100 CCDC9Q9Y3X0 531 aaKnown RBP11.01□□□□□ -0.65
VPS53-217ENST00000575100 ABCA10Q8WWZ4 1543 aa11.01□□□□□ -0.65
VPS53-217ENST00000575100 LOC105371045A0A1W2PR82 267 aa11.01□□□□□ -0.65
VPS53-217ENST00000575100 TRHP20396 242 aaPredicted RBP11.01□□□□□ -0.65
VPS53-217ENST00000575100 GAPVD1Q14C86 1478 aa11□□□□□ -0.65
VPS53-217ENST00000575100 CHMP7Q8WUX9 453 aaPredicted RBP11□□□□□ -0.65
VPS53-217ENST00000575100 ZMYND15Q9H091 742 aa10.95□□□□□ -0.66
VPS53-217ENST00000575100 ADAMTS12P58397 1594 aa10.95□□□□□ -0.66
VPS53-217ENST00000575100 BIVM-ERCC5R4GMW8 1640 aa10.95□□□□□ -0.66
VPS53-217ENST00000575100 RSPH6AQ9H0K4 717 aa10.94□□□□□ -0.66
VPS53-217ENST00000575100 GRIN2AQ12879 1464 aa10.93□□□□□ -0.66
VPS53-217ENST00000575100 SHROOM2Q13796 1616 aa10.93□□□□□ -0.66
VPS53-217ENST00000575100 EIF5BO60841 1220 aaKnown RBP10.92□□□□□ -0.66
VPS53-217ENST00000575100 CEP170Q5SW79 1584 aa10.92□□□□□ -0.66
VPS53-217ENST00000575100 NUP160Q12769 1436 aa10.92□□□□□ -0.66
VPS53-217ENST00000575100 TOP2BQ02880 1626 aa10.91□□□□□ -0.66
VPS53-217ENST00000575100 ERCC6L2Q5T890 1561 aa10.91□□□□□ -0.66
VPS53-217ENST00000575100 LMOD2Q6P5Q4 547 aa10.9□□□□□ -0.66
VPS53-217ENST00000575100 NEUROD2Q15784 382 aa10.9□□□□□ -0.66
VPS53-217ENST00000575100 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.9□□□□□ -0.66
VPS53-217ENST00000575100 WRNQ14191 1432 aaPredicted RBP eCLIP10.89□□□□□ -0.67
VPS53-217ENST00000575100 ZBTB7CA1YPR0 619 aa10.88□□□□□ -0.67
VPS53-217ENST00000575100 ERICH3Q5RHP9 1530 aa10.88□□□□□ -0.67
VPS53-217ENST00000575100 HS6ST3Q8IZP7 471 aa10.87□□□□□ -0.67
VPS53-217ENST00000575100 FHAD1B1AJZ9 1412 aa10.87□□□□□ -0.67
VPS53-217ENST00000575100 RNF39Q9H2S5 420 aa10.85□□□□□ -0.67
VPS53-217ENST00000575100 C1orf115Q9H7X2 142 aa10.85□□□□□ -0.67
VPS53-217ENST00000575100 DCAF8L1A6NGE4 600 aa10.85□□□□□ -0.67
VPS53-217ENST00000575100 ARID3AQ99856 593 aa10.85□□□□□ -0.67
VPS53-217ENST00000575100 KIF13AQ9H1H9 1805 aa10.84□□□□□ -0.67
VPS53-217ENST00000575100 NECTIN2Q92692 538 aa10.83□□□□□ -0.68
VPS53-217ENST00000575100 MKRN4PQ13434 485 aaPredicted RBP10.82□□□□□ -0.68
VPS53-217ENST00000575100 SAMD1Q6SPF0 538 aaPredicted RBP10.8□□□□□ -0.68
VPS53-217ENST00000575100 RUSC2Q8N2Y8 1516 aa10.79□□□□□ -0.68
VPS53-217ENST00000575100 PDIA4P13667 645 aaKnown RBP10.79□□□□□ -0.68
VPS53-217ENST00000575100 ZNF219Q9P2Y4 722 aaPredicted RBP10.78□□□□□ -0.68
VPS53-217ENST00000575100 P3H3Q8IVL6 736 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms