RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 CHIC1Q5VXU3 224 aa16.73■□□□□ 0.27
VPS53-217ENST00000575100 AEBP2Q6ZN18 517 aaPredicted RBP16.69■□□□□ 0.26
VPS53-217ENST00000575100 NISCHQ9Y2I1 1504 aa15.34■□□□□ 0.05
VPS53-217ENST00000575100 SLC24A1O60721 1099 aa14.97□□□□□ -0.01
VPS53-217ENST00000575100 PHF23Q9BUL5 403 aaPredicted RBP14.93□□□□□ -0.02
VPS53-217ENST00000575100 EHMT2Q96KQ7 1210 aa14.76□□□□□ -0.05
VPS53-217ENST00000575100 SENP3Q9H4L4 574 aaPredicted RBP14.35□□□□□ -0.11
VPS53-217ENST00000575100 PLPPR3Q6T4P5 718 aa14.16□□□□□ -0.14
VPS53-217ENST00000575100 KCNA4P22459 653 aa14.02□□□□□ -0.17
VPS53-217ENST00000575100 CSRNP3Q8WYN3 585 aa14□□□□□ -0.17
VPS53-217ENST00000575100 RTN4Q9NQC3 1192 aaKnown RBP13.94□□□□□ -0.18
VPS53-217ENST00000575100 CCDC180Q9P1Z9 1646 aa13.9□□□□□ -0.18
VPS53-217ENST00000575100 ABCC9O60706 1549 aa13.87□□□□□ -0.19
VPS53-217ENST00000575100 AMER1Q5JTC6 1135 aaPredicted RBP13.82□□□□□ -0.2
VPS53-217ENST00000575100 SLC4A1APQ9BWU0 796 aaKnown RBP13.52□□□□□ -0.25
VPS53-217ENST00000575100 NCBP3Q53F19 620 aaKnown RBP13.46□□□□□ -0.25
VPS53-217ENST00000575100 POTEDQ86YR6 584 aa13.45□□□□□ -0.26
VPS53-217ENST00000575100 FOXD1Q16676 465 aa13.41□□□□□ -0.26
VPS53-217ENST00000575100 ADRA2BP18089 450 aa13.3□□□□□ -0.28
VPS53-217ENST00000575100 RB1CC1Q8TDY2 1594 aa13.23□□□□□ -0.29
VPS53-217ENST00000575100 DAXXQ9UER7 740 aaPredicted RBP13.14□□□□□ -0.31
VPS53-217ENST00000575100 NACADO15069 1562 aa13.12□□□□□ -0.31
VPS53-217ENST00000575100 DNAJC5BQ9UF47 199 aa13.09□□□□□ -0.31
VPS53-217ENST00000575100 ZBTB22O15209 634 aa12.99□□□□□ -0.33
VPS53-217ENST00000575100 UNC13AQ9UPW8 1703 aa12.98□□□□□ -0.33
VPS53-217ENST00000575100 PRKCSHP14314 528 aaPredicted RBP12.96□□□□□ -0.34
VPS53-217ENST00000575100 MYO15BQ96JP2 1530 aa12.94□□□□□ -0.34
VPS53-217ENST00000575100 PPP6R1Q9UPN7 881 aa12.89□□□□□ -0.35
VPS53-217ENST00000575100 BICRAQ9NZM4 1560 aa12.86□□□□□ -0.35
VPS53-217ENST00000575100 PABPN1Q86U42 306 aaKnown RBP eCLIP12.83□□□□□ -0.35
VPS53-217ENST00000575100 MSH5O43196 834 aa12.81□□□□□ -0.36
VPS53-217ENST00000575100 DCAF8L2P0C7V8 631 aa12.8□□□□□ -0.36
VPS53-217ENST00000575100 TAOK2Q9UL54 1235 aa12.78□□□□□ -0.36
VPS53-217ENST00000575100 BCANQ96GW7 911 aa12.75□□□□□ -0.37
VPS53-217ENST00000575100 ARXQ96QS3 562 aa12.72□□□□□ -0.37
VPS53-217ENST00000575100 SHROOM4Q9ULL8 1493 aa12.72□□□□□ -0.37
VPS53-217ENST00000575100 DCAF1Q9Y4B6 1507 aa12.72□□□□□ -0.37
VPS53-217ENST00000575100 ZCCHC6Q5VYS8 1495 aaKnown RBP12.7□□□□□ -0.38
VPS53-217ENST00000575100 PLCB2Q00722 1185 aa12.7□□□□□ -0.38
VPS53-217ENST00000575100 PPP4R3CPQ6ZMV5 832 aa12.66□□□□□ -0.38
VPS53-217ENST00000575100 NPM3O75607 178 aaKnown RBP12.61□□□□□ -0.39
VPS53-217ENST00000575100 TIMELESSQ9UNS1 1208 aa12.61□□□□□ -0.39
VPS53-217ENST00000575100 CC2D2AQ9P2K1 1620 aa12.58□□□□□ -0.4
VPS53-217ENST00000575100 SCRIBQ14160 1630 aa12.56□□□□□ -0.4
VPS53-217ENST00000575100 CECR2Q9BXF3 1484 aa12.53□□□□□ -0.4
VPS53-217ENST00000575100 EIF4G1Q04637 1599 aaKnown RBP12.53□□□□□ -0.4
VPS53-217ENST00000575100 TPRNQ4KMQ1 711 aa12.51□□□□□ -0.41
VPS53-217ENST00000575100 FKBP8Q14318 412 aa12.5□□□□□ -0.41
VPS53-217ENST00000575100 TULP1O00294 542 aaPredicted RBP12.44□□□□□ -0.42
VPS53-217ENST00000575100 HAP1P54257 671 aaPredicted RBP12.44□□□□□ -0.42
VPS53-217ENST00000575100 FOXD4L1Q9NU39 408 aa12.43□□□□□ -0.42
VPS53-217ENST00000575100 PIAS4Q8N2W9 510 aaPredicted RBP12.39□□□□□ -0.43
VPS53-217ENST00000575100 VSIG10Q8N0Z9 540 aa12.33□□□□□ -0.44
VPS53-217ENST00000575100 HOMEZQ8IX15 550 aa12.3□□□□□ -0.44
VPS53-217ENST00000575100 GTF3C3Q9Y5Q9 886 aa12.22□□□□□ -0.45
VPS53-217ENST00000575100 ERICH6Q7L0X2 663 aa12.21□□□□□ -0.46
VPS53-217ENST00000575100 DNAJC5Q9H3Z4 198 aa12.14□□□□□ -0.47
VPS53-217ENST00000575100 KDM2AQ9Y2K7 1162 aa12.1□□□□□ -0.47
VPS53-217ENST00000575100 NCAPD3P42695 1498 aa12.09□□□□□ -0.47
VPS53-217ENST00000575100 CUX2O14529 1486 aa12.08□□□□□ -0.48
VPS53-217ENST00000575100 RANGAP1P46060 587 aaPredicted RBP12.04□□□□□ -0.48
VPS53-217ENST00000575100 HMGXB3Q12766 1538 aa12.03□□□□□ -0.48
VPS53-217ENST00000575100 ATAD2BQ9ULI0 1458 aa12.02□□□□□ -0.49
VPS53-217ENST00000575100 SMARCA4P51532 1647 aa12.01□□□□□ -0.49
VPS53-217ENST00000575100 SMARCA2P51531 1590 aa12.01□□□□□ -0.49
VPS53-217ENST00000575100 CNKSR2Q8WXI2 1034 aa11.98□□□□□ -0.49
VPS53-217ENST00000575100 ERCC6Q03468 1493 aa11.98□□□□□ -0.49
VPS53-217ENST00000575100 TMEM132AQ24JP5 1023 aa11.98□□□□□ -0.49
VPS53-217ENST00000575100 FBLN2P98095 1184 aa11.96□□□□□ -0.5
VPS53-217ENST00000575100 PEG3Q9GZU2 1588 aa11.93□□□□□ -0.5
VPS53-217ENST00000575100 BAZ1AQ9NRL2 1556 aaPredicted RBP11.92□□□□□ -0.5
VPS53-217ENST00000575100 NESP48681 1621 aa11.89□□□□□ -0.51
VPS53-217ENST00000575100 PODXL2Q9NZ53 605 aa11.88□□□□□ -0.51
VPS53-217ENST00000575100 BAZ1BQ9UIG0 1483 aaKnown RBP11.88□□□□□ -0.51
VPS53-217ENST00000575100 THOC2Q8NI27 1593 aaKnown RBP11.88□□□□□ -0.51
VPS53-217ENST00000575100 ATXN8OSP0DMR3 200 aa11.87□□□□□ -0.51
VPS53-217ENST00000575100 LAMC3Q9Y6N6 1575 aa11.86□□□□□ -0.51
VPS53-217ENST00000575100 C14orf37Q86TY3 774 aa11.82□□□□□ -0.52
VPS53-217ENST00000575100 KIF21AQ7Z4S6 1674 aa11.8□□□□□ -0.52
VPS53-217ENST00000575100 MROH2BQ7Z745 1585 aa11.8□□□□□ -0.52
VPS53-217ENST00000575100 APLP2Q06481 763 aa11.74□□□□□ -0.53
VPS53-217ENST00000575100 PDS5BQ9NTI5 1447 aa11.74□□□□□ -0.53
VPS53-217ENST00000575100 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.7□□□□□ -0.54
VPS53-217ENST00000575100 KLHL34Q8N239 644 aa11.68□□□□□ -0.54
VPS53-217ENST00000575100 BBXQ8WY36 941 aaPredicted RBP11.68□□□□□ -0.54
VPS53-217ENST00000575100 CADPSQ9ULU8 1353 aa11.68□□□□□ -0.54
VPS53-217ENST00000575100 WDR62O43379 1518 aa11.67□□□□□ -0.54
VPS53-217ENST00000575100 MRC2Q9UBG0 1479 aa11.67□□□□□ -0.54
VPS53-217ENST00000575100 WIZO95785 1651 aa11.66□□□□□ -0.54
VPS53-217ENST00000575100 PKD2Q13563 968 aa11.66□□□□□ -0.54
VPS53-217ENST00000575100 PAXIP1Q6ZW49 1069 aaPredicted RBP11.66□□□□□ -0.54
VPS53-217ENST00000575100 MAPK8IP2Q13387 824 aaPredicted RBP11.65□□□□□ -0.54
VPS53-217ENST00000575100 NBR1Q14596 966 aa11.62□□□□□ -0.55
VPS53-217ENST00000575100 FBXO3Q9UK99 471 aa11.62□□□□□ -0.55
VPS53-217ENST00000575100 CFAP44Q96MT7 982 aa11.59□□□□□ -0.55
VPS53-217ENST00000575100 SLC4A2P04920 1241 aa11.59□□□□□ -0.55
VPS53-217ENST00000575100 NPM2Q86SE8 214 aaKnown RBP11.59□□□□□ -0.55
VPS53-217ENST00000575100 CEP164Q9UPV0 1460 aa11.58□□□□□ -0.55
VPS53-217ENST00000575100 SUPT5HO00267 1087 aaKnown RBP11.58□□□□□ -0.56
VPS53-217ENST00000575100 RSF1Q96T23 1441 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms