RNA–Protein interactions for RNA: ENST00000573852.5

SCARF1-206, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 2,698 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-206ENST00000573852 SETD5Q9C0A6 1442 aa27.53■■■□□ 2
SCARF1-206ENST00000573852 SUPT16HQ9Y5B9 1047 aaKnown RBP27.5■■□□□ 1.99
SCARF1-206ENST00000573852 FHAD1B1AJZ9 1412 aa27.45■■□□□ 1.99
SCARF1-206ENST00000573852 FAM50AQ14320 339 aaKnown RBP27.44■■□□□ 1.98
SCARF1-206ENST00000573852 P3H3Q8IVL6 736 aa27.44■■□□□ 1.98
SCARF1-206ENST00000573852 CFAP43Q8NDM7 1665 aa27.44■■□□□ 1.98
SCARF1-206ENST00000573852 PCF11O94913 1555 aaKnown RBP27.43■■□□□ 1.98
SCARF1-206ENST00000573852 KCNH8Q96L42 1107 aa27.41■■□□□ 1.98
SCARF1-206ENST00000573852 SIN3AQ96ST3 1273 aa27.41■■□□□ 1.98
SCARF1-206ENST00000573852 WDR97A6NE52 1622 aa27.39■■□□□ 1.97
SCARF1-206ENST00000573852 ATP1B4Q9UN42 357 aaPredicted RBP27.37■■□□□ 1.97
SCARF1-206ENST00000573852 FANCD2Q9BXW9 1451 aa27.34■■□□□ 1.97
SCARF1-206ENST00000573852 FHOD3Q2V2M9 1422 aa27.34■■□□□ 1.97
SCARF1-206ENST00000573852 RAD54L2Q9Y4B4 1467 aa27.3■■□□□ 1.96
SCARF1-206ENST00000573852 DDX10Q13206 875 aaKnown RBP27.28■■□□□ 1.96
SCARF1-206ENST00000573852 FYCO1Q9BQS8 1478 aa27.27■■□□□ 1.96
SCARF1-206ENST00000573852 ABCA10Q8WWZ4 1543 aa27.25■■□□□ 1.95
SCARF1-206ENST00000573852 DNMBPQ6XZF7 1577 aa27.25■■□□□ 1.95
SCARF1-206ENST00000573852 CC2D2AQ9P2K1 1620 aa27.25■■□□□ 1.95
SCARF1-206ENST00000573852 CASKIN1Q8WXD9 1431 aa27.25■■□□□ 1.95
SCARF1-206ENST00000573852 EFCAB5A4FU69 1503 aa27.23■■□□□ 1.95
SCARF1-206ENST00000573852 TIMELESSQ9UNS1 1208 aa27.23■■□□□ 1.95
SCARF1-206ENST00000573852 POLA1P09884 1462 aaPredicted RBP27.22■■□□□ 1.95
SCARF1-206ENST00000573852 AQRO60306 1485 aaKnown RBP eCLIP27.2■■□□□ 1.95
SCARF1-206ENST00000573852 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.2■■□□□ 1.956e-8■■■■□ 21.9
SCARF1-206ENST00000573852 TOPBP1Q92547 1522 aa27.2■■□□□ 1.94
SCARF1-206ENST00000573852 PPP1R15AO75807 674 aaPredicted RBP27.2■■□□□ 1.94
SCARF1-206ENST00000573852 CTTNBP2Q8WZ74 1663 aa27.16■■□□□ 1.94
SCARF1-206ENST00000573852 CUL7Q14999 1698 aa27.15■■□□□ 1.94
SCARF1-206ENST00000573852 HIRIP3Q9BW71 556 aaPredicted RBP27.15■■□□□ 1.94
SCARF1-206ENST00000573852 FGD6Q6ZV73 1430 aa27.12■■□□□ 1.93
SCARF1-206ENST00000573852 TSHZ2Q9NRE2 1034 aa27.11■■□□□ 1.93
SCARF1-206ENST00000573852 NESP48681 1621 aa27.1■■□□□ 1.93
SCARF1-206ENST00000573852 FMN1Q68DA7 1419 aa27.09■■□□□ 1.93
SCARF1-206ENST00000573852 SNAPC4Q5SXM2 1469 aa27.09■■□□□ 1.93
SCARF1-206ENST00000573852 PTPRKQ15262 1439 aa27.04■■□□□ 1.92
SCARF1-206ENST00000573852 CCDC18Q5T9S5 1454 aa27.04■■□□□ 1.92
SCARF1-206ENST00000573852 MTUS2Q5JR59 1369 aa27.03■■□□□ 1.92
SCARF1-206ENST00000573852 HFM1A2PYH4 1435 aa27■■□□□ 1.91
SCARF1-206ENST00000573852 LRRIQ1Q96JM4 1722 aa26.99■■□□□ 1.91
SCARF1-206ENST00000573852 TONSLQ96HA7 1378 aa26.99■■□□□ 1.91
SCARF1-206ENST00000573852 CCER2I3L3R5 266 aa26.98■■□□□ 1.91
SCARF1-206ENST00000573852 BCANQ96GW7 911 aa26.98■■□□□ 1.91
SCARF1-206ENST00000573852 FKBP8Q14318 412 aa26.97■■□□□ 1.91
SCARF1-206ENST00000573852 PTPN23Q9H3S7 1636 aa26.97■■□□□ 1.91
SCARF1-206ENST00000573852 UACAQ9BZF9 1416 aa26.97■■□□□ 1.91
SCARF1-206ENST00000573852 ANP32CO43423 234 aa26.96■■□□□ 1.91
SCARF1-206ENST00000573852 SAMD9Q5K651 1589 aa26.96■■□□□ 1.91
SCARF1-206ENST00000573852 URB2Q14146 1524 aaKnown RBP26.95■■□□□ 1.9
SCARF1-206ENST00000573852 NCOA2Q15596 1464 aa26.93■■□□□ 1.9
SCARF1-206ENST00000573852 TDRD9Q8NDG6 1382 aaKnown RBP26.93■■□□□ 1.9
SCARF1-206ENST00000573852 NAIPQ13075 1403 aa26.92■■□□□ 1.9
SCARF1-206ENST00000573852 GRIN2BQ13224 1484 aa26.92■■□□□ 1.9
SCARF1-206ENST00000573852 MYOM3Q5VTT5 1437 aa26.91■■□□□ 1.9
SCARF1-206ENST00000573852 TRIM52Q96A61 297 aa26.9■■□□□ 1.9
SCARF1-206ENST00000573852 ABCA5Q8WWZ7 1642 aa26.9■■□□□ 1.9
SCARF1-206ENST00000573852 GAPVD1Q14C86 1478 aa26.85■■□□□ 1.89
SCARF1-206ENST00000573852 SUPT6HQ7KZ85 1726 aaKnown RBP26.85■■□□□ 1.89
SCARF1-206ENST00000573852 THOC2Q8NI27 1593 aaKnown RBP26.83■■□□□ 1.89
SCARF1-206ENST00000573852 LAMC3Q9Y6N6 1575 aa26.82■■□□□ 1.88
SCARF1-206ENST00000573852 KDM5BQ9UGL1 1544 aa26.82■■□□□ 1.88
SCARF1-206ENST00000573852 EHBP1L1Q8N3D4 1523 aa26.82■■□□□ 1.88
SCARF1-206ENST00000573852 UGGT2Q9NYU1 1516 aa26.79■■□□□ 1.88
SCARF1-206ENST00000573852 MAGI3Q5TCQ9 1506 aa26.78■■□□□ 1.88
SCARF1-206ENST00000573852 NEFLP07196 543 aa26.78■■□□□ 1.88
SCARF1-206ENST00000573852 ARHGEF11O15085 1522 aa26.76■■□□□ 1.87
SCARF1-206ENST00000573852 RRP7BPQ9NSQ0 103 aa26.74■■□□□ 1.87
SCARF1-206ENST00000573852 CHIC2Q9UKJ5 165 aa26.71■■□□□ 1.87
SCARF1-206ENST00000573852 DENND4BO75064 1496 aaPredicted RBP26.69■■□□□ 1.86
SCARF1-206ENST00000573852 KIF21AQ7Z4S6 1674 aa26.69■■□□□ 1.86
SCARF1-206ENST00000573852 TCOF1Q13428 1488 aaKnown RBP26.68■■□□□ 1.86
SCARF1-206ENST00000573852 GCC2Q8IWJ2 1684 aa26.66■■□□□ 1.86
SCARF1-206ENST00000573852 ANP32EQ9BTT0 268 aa26.65■■□□□ 1.86
SCARF1-206ENST00000573852 PDS5BQ9NTI5 1447 aa26.65■■□□□ 1.86
SCARF1-206ENST00000573852 KDM6BO15054 1643 aa26.64■■□□□ 1.86
SCARF1-206ENST00000573852 HSPA5P11021 654 aaKnown RBP26.64■■□□□ 1.86
SCARF1-206ENST00000573852 HECW1Q76N89 1606 aa26.63■■□□□ 1.85
SCARF1-206ENST00000573852 WASHC2AQ641Q2 1341 aa26.63■■□□□ 1.85
SCARF1-206ENST00000573852 TARBP1Q13395 1621 aaKnown RBP26.62■■□□□ 1.85
SCARF1-206ENST00000573852 EPRSP07814 1512 aaKnown RBP26.59■■□□□ 1.85
SCARF1-206ENST00000573852 HNRNPUQ00839 825 aaKnown RBP eCLIP26.58■■□□□ 1.85
SCARF1-206ENST00000573852 AKNAQ7Z591 1439 aa26.58■■□□□ 1.85
SCARF1-206ENST00000573852 DNAJC5BQ9UF47 199 aa26.58■■□□□ 1.85
SCARF1-206ENST00000573852 RBM19Q9Y4C8 960 aaKnown RBP26.56■■□□□ 1.84
SCARF1-206ENST00000573852 MPHOSPH9Q99550 1183 aa26.55■■□□□ 1.84
SCARF1-206ENST00000573852 CDK13Q14004 1512 aaKnown RBP26.55■■□□□ 1.84
SCARF1-206ENST00000573852 IQGAP2Q13576 1575 aa26.53■■□□□ 1.84
SCARF1-206ENST00000573852 EIF4G2P78344 907 aaKnown RBP eCLIP26.53■■□□□ 1.84
SCARF1-206ENST00000573852 MIA2Q96PC5 1412 aa26.53■■□□□ 1.84
SCARF1-206ENST00000573852 PBRM1Q86U86 1689 aa26.52■■□□□ 1.84
SCARF1-206ENST00000573852 L3MBTL2Q969R5 705 aa26.51■■□□□ 1.83
SCARF1-206ENST00000573852 ARID3CA6NKF2 412 aa26.51■■□□□ 1.83
SCARF1-206ENST00000573852 FOXD1Q16676 465 aa26.51■■□□□ 1.83
SCARF1-206ENST00000573852 WDR62O43379 1518 aa26.48■■□□□ 1.83
SCARF1-206ENST00000573852 C11orf95C9JLR9 678 aaPredicted RBP26.46■■□□□ 1.83
SCARF1-206ENST00000573852 CNTLNQ9NXG0 1405 aa26.46■■□□□ 1.83
SCARF1-206ENST00000573852 ADAMTS12P58397 1594 aa26.45■■□□□ 1.82
SCARF1-206ENST00000573852 CCDC184Q52MB2 194 aa26.44■■□□□ 1.82
SCARF1-206ENST00000573852 IRX6P78412 446 aaPredicted RBP26.42■■□□□ 1.82
SCARF1-206ENST00000573852 NCOA1Q15788 1441 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms