RNA–Protein interactions for RNA: ENST00000573852.5

SCARF1-206, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 2,698 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-206ENST00000573852 NISCHQ9Y2I1 1504 aa38.88■■■■□ 3.81
SCARF1-206ENST00000573852 SHROOM4Q9ULL8 1493 aa33.4■■■□□ 2.94
SCARF1-206ENST00000573852 ZCCHC6Q5VYS8 1495 aaKnown RBP32.94■■■□□ 2.86
SCARF1-206ENST00000573852 CCDC180Q9P1Z9 1646 aa32.88■■■□□ 2.85
SCARF1-206ENST00000573852 SUPT5HO00267 1087 aaKnown RBP32.87■■■□□ 2.85
SCARF1-206ENST00000573852 DCAF8L2P0C7V8 631 aa32.18■■■□□ 2.74
SCARF1-206ENST00000573852 CHIC1Q5VXU3 224 aa32.12■■■□□ 2.73
SCARF1-206ENST00000573852 MYO15BQ96JP2 1530 aa32.1■■■□□ 2.73
SCARF1-206ENST00000573852 DCAF1Q9Y4B6 1507 aa31.86■■■□□ 2.69
SCARF1-206ENST00000573852 HRCP23327 699 aa31.6■■■□□ 2.65
SCARF1-206ENST00000573852 PCGF6Q9BYE7 350 aa31.4■■■□□ 2.62
SCARF1-206ENST00000573852 LOC105371045A0A1W2PR82 267 aa31.21■■■□□ 2.59
SCARF1-206ENST00000573852 ABCC9O60706 1549 aa31.13■■■□□ 2.57
SCARF1-206ENST00000573852 PPARGC1BQ86YN6 1023 aaKnown RBP30.94■■■□□ 2.54
SCARF1-206ENST00000573852 SCRIBQ14160 1630 aa30.92■■■□□ 2.54
SCARF1-206ENST00000573852 RSF1Q96T23 1441 aaPredicted RBP30.9■■■□□ 2.54
SCARF1-206ENST00000573852 TRIM26Q12899 539 aaPredicted RBP30.72■■■□□ 2.51
SCARF1-206ENST00000573852 RB1CC1Q8TDY2 1594 aa30.62■■■□□ 2.49
SCARF1-206ENST00000573852 TRIM41Q8WV44 630 aa30.58■■■□□ 2.49
SCARF1-206ENST00000573852 FAM9AQ8IZU1 332 aaPredicted RBP30.38■■■□□ 2.45
SCARF1-206ENST00000573852 CECR2Q9BXF3 1484 aa30.35■■■□□ 2.45
SCARF1-206ENST00000573852 NACADO15069 1562 aa30.34■■■□□ 2.45
SCARF1-206ENST00000573852 MROH2BQ7Z745 1585 aa30.27■■■□□ 2.44
SCARF1-206ENST00000573852 ZEB1P37275 1124 aaPredicted RBP30.13■■■□□ 2.41
SCARF1-206ENST00000573852 EHMT2Q96KQ7 1210 aa30.13■■■□□ 2.41
SCARF1-206ENST00000573852 WIZO95785 1651 aa30.13■■■□□ 2.41
SCARF1-206ENST00000573852 BAZ1AQ9NRL2 1556 aaPredicted RBP29.93■■■□□ 2.38
SCARF1-206ENST00000573852 EIF4G1Q04637 1599 aaKnown RBP29.84■■■□□ 2.37
SCARF1-206ENST00000573852 TOP2AP11388 1531 aaKnown RBP29.61■■■□□ 2.33
SCARF1-206ENST00000573852 ABCC8Q09428 1581 aa29.56■■■□□ 2.32
SCARF1-206ENST00000573852 SMARCA4P51532 1647 aa29.55■■■□□ 2.32
SCARF1-206ENST00000573852 CCDC88BA6NC98 1476 aa29.53■■■□□ 2.32
SCARF1-206ENST00000573852 SMARCA2P51531 1590 aa29.49■■■□□ 2.31
SCARF1-206ENST00000573852 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.47■■■□□ 2.31
SCARF1-206ENST00000573852 UNC13AQ9UPW8 1703 aa29.42■■■□□ 2.3
SCARF1-206ENST00000573852 CCER1Q8TC90 406 aaPredicted RBP29.38■■■□□ 2.29
SCARF1-206ENST00000573852 WRNQ14191 1432 aaPredicted RBP eCLIP29.35■■■□□ 2.29
SCARF1-206ENST00000573852 SOGA1O94964 1423 aa29.34■■■□□ 2.29
SCARF1-206ENST00000573852 CEP162Q5TB80 1403 aa29.32■■■□□ 2.28
SCARF1-206ENST00000573852 SCAF1Q9H7N4 1312 aaKnown RBP29.31■■■□□ 2.28
SCARF1-206ENST00000573852 TNIKQ9UKE5 1360 aa29.25■■■□□ 2.27
SCARF1-206ENST00000573852 TTBK1Q5TCY1 1321 aaPredicted RBP29.23■■■□□ 2.27
SCARF1-206ENST00000573852 RUSC2Q8N2Y8 1516 aa29.2■■■□□ 2.27
SCARF1-206ENST00000573852 CSRNP3Q8WYN3 585 aa29.18■■■□□ 2.26
SCARF1-206ENST00000573852 EEA1Q15075 1411 aa29.17■■■□□ 2.26
SCARF1-206ENST00000573852 UBTFP17480 764 aaKnown RBP29.09■■■□□ 2.25
SCARF1-206ENST00000573852 PABPN1Q86U42 306 aaKnown RBP eCLIP29.04■■■□□ 2.24
SCARF1-206ENST00000573852 BICRAQ9NZM4 1560 aa29.03■■■□□ 2.24
SCARF1-206ENST00000573852 GOLGA3Q08378 1498 aa29.01■■■□□ 2.24
SCARF1-206ENST00000573852 DIEXFQ68CQ4 756 aaKnown RBP28.96■■■□□ 2.23
SCARF1-206ENST00000573852 PEG3Q9GZU2 1588 aa28.95■■■□□ 2.22
SCARF1-206ENST00000573852 PELP1Q8IZL8 1130 aaKnown RBP28.93■■■□□ 2.22
SCARF1-206ENST00000573852 ACIN1Q9UKV3 1341 aaKnown RBP28.92■■■□□ 2.22
SCARF1-206ENST00000573852 NEUROD1Q13562 356 aa28.88■■■□□ 2.21
SCARF1-206ENST00000573852 SYNJ1O43426 1573 aa28.87■■■□□ 2.21
SCARF1-206ENST00000573852 CEP164Q9UPV0 1460 aa28.82■■■□□ 2.2
SCARF1-206ENST00000573852 KIF21BO75037 1637 aa28.79■■■□□ 2.2
SCARF1-206ENST00000573852 ATAD2BQ9ULI0 1458 aa28.73■■■□□ 2.19
SCARF1-206ENST00000573852 CLIP1P30622 1438 aa28.71■■■□□ 2.19
SCARF1-206ENST00000573852 ZNF316A6NFI3 1004 aaPredicted RBP28.68■■■□□ 2.18
SCARF1-206ENST00000573852 CENPBP07199 599 aaPredicted RBP28.66■■■□□ 2.18
SCARF1-206ENST00000573852 BAZ1BQ9UIG0 1483 aaKnown RBP28.65■■■□□ 2.18
SCARF1-206ENST00000573852 HNRNPUL2Q1KMD3 747 aaKnown RBP28.64■■■□□ 2.17
SCARF1-206ENST00000573852 VPS8Q8N3P4 1428 aa28.62■■■□□ 2.17
SCARF1-206ENST00000573852 RAPGEF2Q9Y4G8 1499 aa28.6■■■□□ 2.17
SCARF1-206ENST00000573852 GTF3C3Q9Y5Q9 886 aa28.6■■■□□ 2.17
SCARF1-206ENST00000573852 TOP2BQ02880 1626 aa28.47■■■□□ 2.15
SCARF1-206ENST00000573852 APLP2Q06481 763 aa28.46■■■□□ 2.15
SCARF1-206ENST00000573852 RANGAP1P46060 587 aaPredicted RBP28.46■■■□□ 2.15
SCARF1-206ENST00000573852 BIVM-ERCC5R4GMW8 1640 aa28.35■■■□□ 2.13
SCARF1-206ENST00000573852 MIER1Q8N108 512 aa28.33■■■□□ 2.13
SCARF1-206ENST00000573852 YTHDC1Q96MU7 727 aaKnown RBP28.31■■■□□ 2.12
SCARF1-206ENST00000573852 PRXQ9BXM0 1461 aa28.28■■■□□ 2.12
SCARF1-206ENST00000573852 ERICH3Q5RHP9 1530 aa28.27■■■□□ 2.12
SCARF1-206ENST00000573852 ARAP1Q96P48 1450 aa28.23■■■□□ 2.11
SCARF1-206ENST00000573852 KANK4Q5T7N3 995 aaPredicted RBP28.15■■■□□ 2.1
SCARF1-206ENST00000573852 CUX1P39880 1505 aa28.15■■■□□ 2.1
SCARF1-206ENST00000573852 DHX57Q6P158 1386 aaKnown RBP28.12■■■□□ 2.09
SCARF1-206ENST00000573852 NCAPD3P42695 1498 aa28.1■■■□□ 2.09
SCARF1-206ENST00000573852 HMGXB3Q12766 1538 aa28.1■■■□□ 2.09
SCARF1-206ENST00000573852 CLSPNQ9HAW4 1339 aa28.09■■■□□ 2.09
SCARF1-206ENST00000573852 KIF27Q86VH2 1401 aa28.06■■■□□ 2.08
SCARF1-206ENST00000573852 RRBP1Q9P2E9 1410 aaKnown RBP28■■■□□ 2.07
SCARF1-206ENST00000573852 CFTRP13569 1480 aa27.97■■■□□ 2.07
SCARF1-206ENST00000573852 ARHGAP35Q9NRY4 1499 aa27.94■■■□□ 2.06
SCARF1-206ENST00000573852 CUX2O14529 1486 aa27.87■■■□□ 2.05
SCARF1-206ENST00000573852 CCNB3Q8WWL7 1395 aa27.86■■■□□ 2.05
SCARF1-206ENST00000573852 ITGAEP38570 1179 aa27.77■■■□□ 2.04
SCARF1-206ENST00000573852 IGF1RP08069 1367 aa27.76■■■□□ 2.04
SCARF1-206ENST00000573852 PRDM2Q13029 1718 aa27.74■■■□□ 2.03
SCARF1-206ENST00000573852 TIAM1Q13009 1591 aa27.67■■■□□ 2.02
SCARF1-206ENST00000573852 RAB3GAP2Q9H2M9 1393 aa27.66■■■□□ 2.02
SCARF1-206ENST00000573852 MAP3K1Q13233 1512 aa27.64■■■□□ 2.02
SCARF1-206ENST00000573852 CARMIL1Q5VZK9 1371 aa27.63■■■□□ 2.01
SCARF1-206ENST00000573852 MAPKBP1O60336 1514 aa27.62■■■□□ 2.01
SCARF1-206ENST00000573852 MYT1Q01538 1121 aa27.61■■■□□ 2.01
SCARF1-206ENST00000573852 CADPSQ9ULU8 1353 aa27.59■■■□□ 2.01
SCARF1-206ENST00000573852 FGD5Q6ZNL6 1462 aa27.59■■■□□ 2.01
SCARF1-206ENST00000573852 LRRC9Q6ZRR7 1453 aa27.57■■■□□ 2
SCARF1-206ENST00000573852 PHLDB1Q86UU1 1377 aa27.54■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms