RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 FGD5Q6ZNL6 1462 aa22.51■■□□□ 1.19
NUP88-207ENST00000573584 PHLDB1Q86UU1 1377 aa22.49■■□□□ 1.19
NUP88-207ENST00000573584 FAM50AQ14320 339 aaKnown RBP22.47■■□□□ 1.19
NUP88-207ENST00000573584 FHAD1B1AJZ9 1412 aa22.46■■□□□ 1.19
NUP88-207ENST00000573584 P3H3Q8IVL6 736 aa22.44■■□□□ 1.18
NUP88-207ENST00000573584 ATP1B4Q9UN42 357 aaPredicted RBP22.43■■□□□ 1.18
NUP88-207ENST00000573584 SIN3AQ96ST3 1273 aa22.41■■□□□ 1.18
NUP88-207ENST00000573584 KCNH8Q96L42 1107 aa22.4■■□□□ 1.18
NUP88-207ENST00000573584 PCF11O94913 1555 aaKnown RBP22.35■■□□□ 1.17
NUP88-207ENST00000573584 WDR97A6NE52 1622 aa22.34■■□□□ 1.17
NUP88-207ENST00000573584 DDX10Q13206 875 aaKnown RBP22.34■■□□□ 1.17
NUP88-207ENST00000573584 CFAP43Q8NDM7 1665 aa22.33■■□□□ 1.17
NUP88-207ENST00000573584 TIMELESSQ9UNS1 1208 aa22.33■■□□□ 1.16
NUP88-207ENST00000573584 FHOD3Q2V2M9 1422 aa22.32■■□□□ 1.16
NUP88-207ENST00000573584 FANCD2Q9BXW9 1451 aa22.31■■□□□ 1.16
NUP88-207ENST00000573584 FYCO1Q9BQS8 1478 aa22.27■■□□□ 1.16
NUP88-207ENST00000573584 RAD54L2Q9Y4B4 1467 aa22.27■■□□□ 1.16
NUP88-207ENST00000573584 CASKIN1Q8WXD9 1431 aa22.25■■□□□ 1.15
NUP88-207ENST00000573584 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.25■■□□□ 1.15
NUP88-207ENST00000573584 PPP1R15AO75807 674 aaPredicted RBP22.24■■□□□ 1.15
NUP88-207ENST00000573584 ABCA10Q8WWZ4 1543 aa22.23■■□□□ 1.15
NUP88-207ENST00000573584 EFCAB5A4FU69 1503 aa22.23■■□□□ 1.15
NUP88-207ENST00000573584 AQRO60306 1485 aaKnown RBP eCLIP22.21■■□□□ 1.151e-8■■■□□ 16.2
NUP88-207ENST00000573584 DNMBPQ6XZF7 1577 aa22.21■■□□□ 1.15
NUP88-207ENST00000573584 HIRIP3Q9BW71 556 aaPredicted RBP22.2■■□□□ 1.15
NUP88-207ENST00000573584 POLA1P09884 1462 aaPredicted RBP22.2■■□□□ 1.14
NUP88-207ENST00000573584 TSHZ2Q9NRE2 1034 aa22.19■■□□□ 1.14
NUP88-207ENST00000573584 CC2D2AQ9P2K1 1620 aa22.18■■□□□ 1.14
NUP88-207ENST00000573584 TOPBP1Q92547 1522 aa22.18■■□□□ 1.14
NUP88-207ENST00000573584 FMN1Q68DA7 1419 aa22.16■■□□□ 1.14
NUP88-207ENST00000573584 FGD6Q6ZV73 1430 aa22.16■■□□□ 1.14
NUP88-207ENST00000573584 CUL7Q14999 1698 aa22.13■■□□□ 1.13
NUP88-207ENST00000573584 ANP32CO43423 234 aa22.12■■□□□ 1.13
NUP88-207ENST00000573584 MTUS2Q5JR59 1369 aa22.12■■□□□ 1.13
NUP88-207ENST00000573584 TONSLQ96HA7 1378 aa22.11■■□□□ 1.13
NUP88-207ENST00000573584 CCER2I3L3R5 266 aa22.11■■□□□ 1.13
NUP88-207ENST00000573584 FKBP8Q14318 412 aa22.11■■□□□ 1.13
NUP88-207ENST00000573584 BCANQ96GW7 911 aa22.1■■□□□ 1.13
NUP88-207ENST00000573584 CTTNBP2Q8WZ74 1663 aa22.09■■□□□ 1.13
NUP88-207ENST00000573584 CCDC18Q5T9S5 1454 aa22.09■■□□□ 1.13
NUP88-207ENST00000573584 SNAPC4Q5SXM2 1469 aa22.08■■□□□ 1.13
NUP88-207ENST00000573584 NESP48681 1621 aa22.07■■□□□ 1.12
NUP88-207ENST00000573584 HFM1A2PYH4 1435 aa22.06■■□□□ 1.12
NUP88-207ENST00000573584 PTPRKQ15262 1439 aa22.06■■□□□ 1.12
NUP88-207ENST00000573584 UACAQ9BZF9 1416 aa22.05■■□□□ 1.12
NUP88-207ENST00000573584 TRIM52Q96A61 297 aa22.04■■□□□ 1.12
NUP88-207ENST00000573584 NEFLP07196 543 aa22■■□□□ 1.11
NUP88-207ENST00000573584 TDRD9Q8NDG6 1382 aaKnown RBP22■■□□□ 1.11
NUP88-207ENST00000573584 PTPN23Q9H3S7 1636 aa21.99■■□□□ 1.11
NUP88-207ENST00000573584 NCOA2Q15596 1464 aa21.99■■□□□ 1.11
NUP88-207ENST00000573584 NAIPQ13075 1403 aa21.99■■□□□ 1.11
NUP88-207ENST00000573584 MYOM3Q5VTT5 1437 aa21.99■■□□□ 1.11
NUP88-207ENST00000573584 SAMD9Q5K651 1589 aa21.96■■□□□ 1.11
NUP88-207ENST00000573584 URB2Q14146 1524 aaKnown RBP21.96■■□□□ 1.11
NUP88-207ENST00000573584 GRIN2BQ13224 1484 aa21.95■■□□□ 1.1
NUP88-207ENST00000573584 GAPVD1Q14C86 1478 aa21.93■■□□□ 1.1
NUP88-207ENST00000573584 LRRIQ1Q96JM4 1722 aa21.91■■□□□ 1.1
NUP88-207ENST00000573584 SUPT6HQ7KZ85 1726 aaKnown RBP21.9■■□□□ 1.1
NUP88-207ENST00000573584 ABCA5Q8WWZ7 1642 aa21.89■■□□□ 1.1
NUP88-207ENST00000573584 EHBP1L1Q8N3D4 1523 aa21.88■■□□□ 1.09
NUP88-207ENST00000573584 THOC2Q8NI27 1593 aaKnown RBP21.88■■□□□ 1.09
NUP88-207ENST00000573584 RRP7BPQ9NSQ0 103 aa21.88■■□□□ 1.09
NUP88-207ENST00000573584 LAMC3Q9Y6N6 1575 aa21.86■■□□□ 1.09
NUP88-207ENST00000573584 CHIC2Q9UKJ5 165 aa21.86■■□□□ 1.09
NUP88-207ENST00000573584 ANP32EQ9BTT0 268 aa21.86■■□□□ 1.09
NUP88-207ENST00000573584 UGGT2Q9NYU1 1516 aa21.84■■□□□ 1.09
NUP88-207ENST00000573584 KDM5BQ9UGL1 1544 aa21.84■■□□□ 1.09
NUP88-207ENST00000573584 ARHGEF11O15085 1522 aa21.82■■□□□ 1.08
NUP88-207ENST00000573584 MAGI3Q5TCQ9 1506 aa21.81■■□□□ 1.08
NUP88-207ENST00000573584 HSPA5P11021 654 aaKnown RBP21.79■■□□□ 1.08
NUP88-207ENST00000573584 HNRNPUQ00839 825 aaKnown RBP eCLIP21.79■■□□□ 1.08
NUP88-207ENST00000573584 PDS5BQ9NTI5 1447 aa21.79■■□□□ 1.08
NUP88-207ENST00000573584 WASHC2AQ641Q2 1341 aa21.78■■□□□ 1.08
NUP88-207ENST00000573584 TCOF1Q13428 1488 aaKnown RBP21.77■■□□□ 1.08
NUP88-207ENST00000573584 RBM19Q9Y4C8 960 aaKnown RBP21.77■■□□□ 1.08
NUP88-207ENST00000573584 EIF4G2P78344 907 aaKnown RBP eCLIP21.75■■□□□ 1.07
NUP88-207ENST00000573584 DENND4BO75064 1496 aaPredicted RBP21.74■■□□□ 1.07
NUP88-207ENST00000573584 MPHOSPH9Q99550 1183 aa21.73■■□□□ 1.07
NUP88-207ENST00000573584 KIF21AQ7Z4S6 1674 aa21.73■■□□□ 1.07
NUP88-207ENST00000573584 AKNAQ7Z591 1439 aa21.72■■□□□ 1.07
NUP88-207ENST00000573584 GCC2Q8IWJ2 1684 aa21.71■■□□□ 1.07
NUP88-207ENST00000573584 HECW1Q76N89 1606 aa21.7■■□□□ 1.07
NUP88-207ENST00000573584 EPRSP07814 1512 aaKnown RBP21.7■■□□□ 1.06
NUP88-207ENST00000573584 L3MBTL2Q969R5 705 aa21.69■■□□□ 1.06
NUP88-207ENST00000573584 MIA2Q96PC5 1412 aa21.69■■□□□ 1.06
NUP88-207ENST00000573584 KDM6BO15054 1643 aa21.68■■□□□ 1.06
NUP88-207ENST00000573584 ARID3CA6NKF2 412 aa21.68■■□□□ 1.06
NUP88-207ENST00000573584 FOXD1Q16676 465 aa21.67■■□□□ 1.06
NUP88-207ENST00000573584 TARBP1Q13395 1621 aaKnown RBP21.66■■□□□ 1.06
NUP88-207ENST00000573584 CDK13Q14004 1512 aaKnown RBP21.65■■□□□ 1.06
NUP88-207ENST00000573584 DNAJC5BQ9UF47 199 aa21.64■■□□□ 1.06
NUP88-207ENST00000573584 IQGAP2Q13576 1575 aa21.64■■□□□ 1.05
NUP88-207ENST00000573584 CNTLNQ9NXG0 1405 aa21.63■■□□□ 1.05
NUP88-207ENST00000573584 IRX6P78412 446 aaPredicted RBP21.63■■□□□ 1.05
NUP88-207ENST00000573584 C11orf95C9JLR9 678 aaPredicted RBP21.61■■□□□ 1.05
NUP88-207ENST00000573584 CCDC184Q52MB2 194 aa21.6■■□□□ 1.05
NUP88-207ENST00000573584 CCDC7Q96M83 1385 aa21.59■■□□□ 1.05
NUP88-207ENST00000573584 PRKRIP1Q9H875 184 aaPredicted RBP21.58■■□□□ 1.05
NUP88-207ENST00000573584 NCOA1Q15788 1441 aa21.58■■□□□ 1.05
NUP88-207ENST00000573584 WDR62O43379 1518 aa21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms