RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 ARHGEF11O15085 1522 aa11.25□□□□□ -0.61
NUP88-206ENST00000573169 SLC4A2P04920 1241 aa11.24□□□□□ -0.61
NUP88-206ENST00000573169 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.24□□□□□ -0.61
NUP88-206ENST00000573169 SNAPC4Q5SXM2 1469 aa11.2□□□□□ -0.62
NUP88-206ENST00000573169 CYB5RLQ6IPT4 315 aa11.2□□□□□ -0.62
NUP88-206ENST00000573169 MYCNP04198 464 aaPredicted RBP11.17□□□□□ -0.62
NUP88-206ENST00000573169 CHMP7Q8WUX9 453 aaPredicted RBP11.16□□□□□ -0.62
NUP88-206ENST00000573169 ARAP1Q96P48 1450 aa11.15□□□□□ -0.62
NUP88-206ENST00000573169 GRIN2BQ13224 1484 aa11.14□□□□□ -0.63
NUP88-206ENST00000573169 WDR97A6NE52 1622 aa11.13□□□□□ -0.63
NUP88-206ENST00000573169 MAGI1Q96QZ7 1491 aaPredicted RBP11.12□□□□□ -0.63
NUP88-206ENST00000573169 GAPVD1Q14C86 1478 aa11.12□□□□□ -0.63
NUP88-206ENST00000573169 CLASP1Q7Z460 1538 aa11.11□□□□□ -0.63
NUP88-206ENST00000573169 SYNJ2O15056 1496 aa11.1□□□□□ -0.63
NUP88-206ENST00000573169 PBRM1Q86U86 1689 aa11.1□□□□□ -0.63
NUP88-206ENST00000573169 ABCA10Q8WWZ4 1543 aa11.09□□□□□ -0.63
NUP88-206ENST00000573169 SYNJ1O43426 1573 aa11.09□□□□□ -0.63
NUP88-206ENST00000573169 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.08□□□□□ -0.64
NUP88-206ENST00000573169 HNRNPUL2Q1KMD3 747 aaKnown RBP11.08□□□□□ -0.64
NUP88-206ENST00000573169 ABCA5Q8WWZ7 1642 aa11.08□□□□□ -0.64
NUP88-206ENST00000573169 TRHP20396 242 aaPredicted RBP11.07□□□□□ -0.64
NUP88-206ENST00000573169 WRNQ14191 1432 aaPredicted RBP eCLIP11.06□□□□□ -0.64
NUP88-206ENST00000573169 TOP2BQ02880 1626 aa11.04□□□□□ -0.64
NUP88-206ENST00000573169 BIVM-ERCC5R4GMW8 1640 aa11.03□□□□□ -0.64
NUP88-206ENST00000573169 ATXN8OSP0DMR3 200 aa11.03□□□□□ -0.64
NUP88-206ENST00000573169 SAMD1Q6SPF0 538 aaPredicted RBP11.01□□□□□ -0.65
NUP88-206ENST00000573169 GRIN2AQ12879 1464 aa11□□□□□ -0.65
NUP88-206ENST00000573169 ADAMTS12P58397 1594 aa11□□□□□ -0.65
NUP88-206ENST00000573169 ERCC6L2Q5T890 1561 aa11□□□□□ -0.65
NUP88-206ENST00000573169 CEP170Q5SW79 1584 aa10.99□□□□□ -0.65
NUP88-206ENST00000573169 U3KPZ7 1027 aaPredicted RBP10.98□□□□□ -0.65
NUP88-206ENST00000573169 FHAD1B1AJZ9 1412 aa10.97□□□□□ -0.65
NUP88-206ENST00000573169 NUP160Q12769 1436 aa10.96□□□□□ -0.65
NUP88-206ENST00000573169 APLP2Q06481 763 aa10.96□□□□□ -0.65
NUP88-206ENST00000573169 ERICH3Q5RHP9 1530 aa10.94□□□□□ -0.66
NUP88-206ENST00000573169 SHROOM2Q13796 1616 aa10.91□□□□□ -0.66
NUP88-206ENST00000573169 HRCP23327 699 aa10.89□□□□□ -0.67
NUP88-206ENST00000573169 PRG4Q92954 1404 aaPredicted RBP10.88□□□□□ -0.67
NUP88-206ENST00000573169 JPH4Q96JJ6 628 aa10.88□□□□□ -0.67
NUP88-206ENST00000573169 IGF1RP08069 1367 aa10.86□□□□□ -0.67
NUP88-206ENST00000573169 RUSC2Q8N2Y8 1516 aa10.84□□□□□ -0.67
NUP88-206ENST00000573169 KIF27Q86VH2 1401 aa10.83□□□□□ -0.68
NUP88-206ENST00000573169 KIAA0586Q9BVV6 1533 aa10.79□□□□□ -0.68
NUP88-206ENST00000573169 CUL7Q14999 1698 aa10.78□□□□□ -0.68
NUP88-206ENST00000573169 TTBK1Q5TCY1 1321 aaPredicted RBP10.78□□□□□ -0.68
NUP88-206ENST00000573169 CARMIL1Q5VZK9 1371 aa10.77□□□□□ -0.68
NUP88-206ENST00000573169 DSG3P32926 999 aa10.76□□□□□ -0.69
NUP88-206ENST00000573169 NPM1P06748 294 aaKnown RBP eCLIP10.75□□□□□ -0.69
NUP88-206ENST00000573169 ADCY10Q96PN6 1610 aa10.75□□□□□ -0.69
NUP88-206ENST00000573169 KIF13AQ9H1H9 1805 aa10.74□□□□□ -0.69
NUP88-206ENST00000573169 FAM69CQ0P6D2 419 aa10.74□□□□□ -0.69
NUP88-206ENST00000573169 PTPRGP23470 1445 aa10.71□□□□□ -0.69
NUP88-206ENST00000573169 ABCC10Q5T3U5 1492 aa10.71□□□□□ -0.69
NUP88-206ENST00000573169 ATF5Q9Y2D1 282 aaPredicted RBP10.71□□□□□ -0.69
NUP88-206ENST00000573169 MAPKBP1O60336 1514 aa10.69□□□□□ -0.7
NUP88-206ENST00000573169 ZNF219Q9P2Y4 722 aaPredicted RBP10.69□□□□□ -0.7
NUP88-206ENST00000573169 DIP2BQ9P265 1576 aa10.69□□□□□ -0.7
NUP88-206ENST00000573169 TNIKQ9UKE5 1360 aa10.68□□□□□ -0.7
NUP88-206ENST00000573169 IQGAP2Q13576 1575 aa10.68□□□□□ -0.7
NUP88-206ENST00000573169 CARMIL2Q6F5E8 1435 aa10.67□□□□□ -0.7
NUP88-206ENST00000573169 DISP1Q96F81 1524 aa10.66□□□□□ -0.7
NUP88-206ENST00000573169 RAPGEF2Q9Y4G8 1499 aa10.66□□□□□ -0.7
NUP88-206ENST00000573169 CAPN15O75808 1086 aa10.65□□□□□ -0.7
NUP88-206ENST00000573169 TSPOAP1O95153 1857 aa10.63□□□□□ -0.71
NUP88-206ENST00000573169 ABCC2Q92887 1545 aa10.63□□□□□ -0.71
NUP88-206ENST00000573169 UACAQ9BZF9 1416 aa10.62□□□□□ -0.71
NUP88-206ENST00000573169 ASXL2Q76L83 1435 aa10.61□□□□□ -0.71
NUP88-206ENST00000573169 UGGT2Q9NYU1 1516 aa10.61□□□□□ -0.71
NUP88-206ENST00000573169 SPINK5Q9NQ38 1064 aaPredicted RBP10.6□□□□□ -0.71
NUP88-206ENST00000573169 UHRF1BP1LA0JNW5 1464 aa10.6□□□□□ -0.71
NUP88-206ENST00000573169 KIAA0556O60303 1618 aa10.59□□□□□ -0.71
NUP88-206ENST00000573169 KDM6BO15054 1643 aa10.58□□□□□ -0.72
NUP88-206ENST00000573169 PLB1Q6P1J6 1458 aa10.57□□□□□ -0.72
NUP88-206ENST00000573169 PRXQ9BXM0 1461 aa10.56□□□□□ -0.72
NUP88-206ENST00000573169 KDM5BQ9UGL1 1544 aa10.56□□□□□ -0.72
NUP88-206ENST00000573169 ZCCHC11Q5TAX3 1644 aaKnown RBP10.55□□□□□ -0.72
NUP88-206ENST00000573169 PPRC1Q5VV67 1664 aaKnown RBP10.55□□□□□ -0.72
NUP88-206ENST00000573169 CTTNBP2Q8WZ74 1663 aa10.55□□□□□ -0.72
NUP88-206ENST00000573169 SP7Q8TDD2 431 aaPredicted RBP10.55□□□□□ -0.72
NUP88-206ENST00000573169 GLI2P10070 1586 aa10.55□□□□□ -0.72
NUP88-206ENST00000573169 EPRSP07814 1512 aaKnown RBP10.54□□□□□ -0.72
NUP88-206ENST00000573169 KDM4FA0A1W2PPD8 638 aa10.54□□□□□ -0.72
NUP88-206ENST00000573169 P3H3Q8IVL6 736 aa10.54□□□□□ -0.72
NUP88-206ENST00000573169 ARID3CA6NKF2 412 aa10.52□□□□□ -0.73
NUP88-206ENST00000573169 PCGF6Q9BYE7 350 aa10.52□□□□□ -0.73
NUP88-206ENST00000573169 COL17A1Q9UMD9 1497 aaPredicted RBP10.52□□□□□ -0.73
NUP88-206ENST00000573169 GOLGA3Q08378 1498 aa10.51□□□□□ -0.73
NUP88-206ENST00000573169 KCNH8Q96L42 1107 aa10.5□□□□□ -0.73
NUP88-206ENST00000573169 ABCA8O94911 1581 aa10.5□□□□□ -0.73
NUP88-206ENST00000573169 MAP3K4Q9Y6R4 1608 aa10.5□□□□□ -0.73
NUP88-206ENST00000573169 FAM9AQ8IZU1 332 aaPredicted RBP10.49□□□□□ -0.73
NUP88-206ENST00000573169 WDR7Q9Y4E6 1490 aa10.49□□□□□ -0.73
NUP88-206ENST00000573169 RANGAP1P46060 587 aaPredicted RBP10.48□□□□□ -0.73
NUP88-206ENST00000573169 POLA2Q14181 598 aa10.47□□□□□ -0.73
NUP88-206ENST00000573169 TEX14Q8IWB6 1497 aa10.45□□□□□ -0.74
NUP88-206ENST00000573169 CD109Q6YHK3 1445 aa10.44□□□□□ -0.74
NUP88-206ENST00000573169 TRIM26Q12899 539 aaPredicted RBP10.44□□□□□ -0.74
NUP88-206ENST00000573169 PELP1Q8IZL8 1130 aaKnown RBP10.44□□□□□ -0.74
NUP88-206ENST00000573169 ZBTB12Q9Y330 459 aaPredicted RBP10.44□□□□□ -0.74
NUP88-206ENST00000573169 ATP10BO94823 1461 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms