RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 AEBP2Q6ZN18 517 aaPredicted RBP18■□□□□ 0.47
NUP88-206ENST00000573169 CHIC1Q5VXU3 224 aa17.3■□□□□ 0.36
NUP88-206ENST00000573169 NISCHQ9Y2I1 1504 aa15.51■□□□□ 0.07
NUP88-206ENST00000573169 SENP3Q9H4L4 574 aaPredicted RBP15.43■□□□□ 0.06
NUP88-206ENST00000573169 POTEDQ86YR6 584 aa15.2■□□□□ 0.02
NUP88-206ENST00000573169 PHF23Q9BUL5 403 aaPredicted RBP15.14■□□□□ 0.01
NUP88-206ENST00000573169 FOXD1Q16676 465 aa14.54□□□□□ -0.08
NUP88-206ENST00000573169 PLPPR3Q6T4P5 718 aa14.21□□□□□ -0.13
NUP88-206ENST00000573169 ABCC9O60706 1549 aa13.95□□□□□ -0.18
NUP88-206ENST00000573169 MSH5O43196 834 aa13.91□□□□□ -0.18
NUP88-206ENST00000573169 CCDC180Q9P1Z9 1646 aa13.86□□□□□ -0.19
NUP88-206ENST00000573169 PIAS4Q8N2W9 510 aaPredicted RBP13.35□□□□□ -0.27
NUP88-206ENST00000573169 ADRA2BP18089 450 aa13.34□□□□□ -0.27
NUP88-206ENST00000573169 PPP6R1Q9UPN7 881 aa13.29□□□□□ -0.28
NUP88-206ENST00000573169 RB1CC1Q8TDY2 1594 aa13.2□□□□□ -0.3
NUP88-206ENST00000573169 DCAF8L2P0C7V8 631 aa13.17□□□□□ -0.3
NUP88-206ENST00000573169 DNAJC5BQ9UF47 199 aa13.11□□□□□ -0.31
NUP88-206ENST00000573169 NACADO15069 1562 aa13.11□□□□□ -0.31
NUP88-206ENST00000573169 PABPN1Q86U42 306 aaKnown RBP eCLIP13.02□□□□□ -0.33
NUP88-206ENST00000573169 UNC13AQ9UPW8 1703 aa12.92□□□□□ -0.34
NUP88-206ENST00000573169 MYO15BQ96JP2 1530 aa12.9□□□□□ -0.34
NUP88-206ENST00000573169 BICRAQ9NZM4 1560 aa12.86□□□□□ -0.35
NUP88-206ENST00000573169 ZCCHC6Q5VYS8 1495 aaKnown RBP12.85□□□□□ -0.35
NUP88-206ENST00000573169 DCAF1Q9Y4B6 1507 aa12.76□□□□□ -0.37
NUP88-206ENST00000573169 SCRIBQ14160 1630 aa12.71□□□□□ -0.37
NUP88-206ENST00000573169 SHROOM4Q9ULL8 1493 aa12.59□□□□□ -0.39
NUP88-206ENST00000573169 CC2D2AQ9P2K1 1620 aa12.55□□□□□ -0.4
NUP88-206ENST00000573169 CECR2Q9BXF3 1484 aa12.53□□□□□ -0.4
NUP88-206ENST00000573169 EIF4G1Q04637 1599 aaKnown RBP12.52□□□□□ -0.4
NUP88-206ENST00000573169 CACNB1Q02641 598 aaPredicted RBP12.52□□□□□ -0.41
NUP88-206ENST00000573169 PPP4R3CPQ6ZMV5 832 aa12.48□□□□□ -0.41
NUP88-206ENST00000573169 SCAF1Q9H7N4 1312 aaKnown RBP12.38□□□□□ -0.43
NUP88-206ENST00000573169 KCNA4P22459 653 aa12.36□□□□□ -0.43
NUP88-206ENST00000573169 NCBP3Q53F19 620 aaKnown RBP12.33□□□□□ -0.44
NUP88-206ENST00000573169 CNKSR2Q8WXI2 1034 aa12.13□□□□□ -0.47
NUP88-206ENST00000573169 NCAPD3P42695 1498 aa12.12□□□□□ -0.47
NUP88-206ENST00000573169 ATAD2BQ9ULI0 1458 aa12.11□□□□□ -0.47
NUP88-206ENST00000573169 DMRT2Q9Y5R5 561 aa12.11□□□□□ -0.47
NUP88-206ENST00000573169 SMARCA4P51532 1647 aa12.09□□□□□ -0.47
NUP88-206ENST00000573169 MAPK8IP2Q13387 824 aaPredicted RBP12.04□□□□□ -0.48
NUP88-206ENST00000573169 SMARCA2P51531 1590 aa12.03□□□□□ -0.48
NUP88-206ENST00000573169 BAZ1AQ9NRL2 1556 aaPredicted RBP12.01□□□□□ -0.49
NUP88-206ENST00000573169 NPM3O75607 178 aaKnown RBP12.01□□□□□ -0.49
NUP88-206ENST00000573169 HMGXB3Q12766 1538 aa12.01□□□□□ -0.49
NUP88-206ENST00000573169 ERCC6Q03468 1493 aa12□□□□□ -0.49
NUP88-206ENST00000573169 NESP48681 1621 aa12□□□□□ -0.49
NUP88-206ENST00000573169 MROH2BQ7Z745 1585 aa11.99□□□□□ -0.49
NUP88-206ENST00000573169 BAZ1BQ9UIG0 1483 aaKnown RBP11.98□□□□□ -0.49
NUP88-206ENST00000573169 DNAJC5Q9H3Z4 198 aa11.96□□□□□ -0.49
NUP88-206ENST00000573169 PEG3Q9GZU2 1588 aa11.93□□□□□ -0.5
NUP88-206ENST00000573169 CUX2O14529 1486 aa11.92□□□□□ -0.5
NUP88-206ENST00000573169 SLC4A1APQ9BWU0 796 aaKnown RBP11.89□□□□□ -0.51
NUP88-206ENST00000573169 WIZO95785 1651 aa11.84□□□□□ -0.51
NUP88-206ENST00000573169 RNF216Q9NWF9 866 aaPredicted RBP11.84□□□□□ -0.51
NUP88-206ENST00000573169 LAMC3Q9Y6N6 1575 aa11.83□□□□□ -0.52
NUP88-206ENST00000573169 THOC2Q8NI27 1593 aaKnown RBP11.81□□□□□ -0.52
NUP88-206ENST00000573169 RNF39Q9H2S5 420 aa11.81□□□□□ -0.52
NUP88-206ENST00000573169 KIF21AQ7Z4S6 1674 aa11.79□□□□□ -0.52
NUP88-206ENST00000573169 PDS5BQ9NTI5 1447 aa11.77□□□□□ -0.52
NUP88-206ENST00000573169 CADPSQ9ULU8 1353 aa11.77□□□□□ -0.53
NUP88-206ENST00000573169 EHMT2Q96KQ7 1210 aa11.74□□□□□ -0.53
NUP88-206ENST00000573169 RSF1Q96T23 1441 aaPredicted RBP11.73□□□□□ -0.53
NUP88-206ENST00000573169 POTEHQ6S545 545 aa11.72□□□□□ -0.53
NUP88-206ENST00000573169 HOXD11P31277 338 aaPredicted RBP11.7□□□□□ -0.54
NUP88-206ENST00000573169 MRC2Q9UBG0 1479 aa11.68□□□□□ -0.54
NUP88-206ENST00000573169 DCAF8L1A6NGE4 600 aa11.67□□□□□ -0.54
NUP88-206ENST00000573169 TOP2AP11388 1531 aaKnown RBP11.65□□□□□ -0.54
NUP88-206ENST00000573169 FANCD2Q9BXW9 1451 aa11.64□□□□□ -0.55
NUP88-206ENST00000573169 WDR62O43379 1518 aa11.64□□□□□ -0.55
NUP88-206ENST00000573169 CEP164Q9UPV0 1460 aa11.63□□□□□ -0.55
NUP88-206ENST00000573169 CFTRP13569 1480 aa11.63□□□□□ -0.55
NUP88-206ENST00000573169 URB2Q14146 1524 aaKnown RBP11.56□□□□□ -0.56
NUP88-206ENST00000573169 CCDC88BA6NC98 1476 aa11.56□□□□□ -0.56
NUP88-206ENST00000573169 C1QBPQ07021 282 aaKnown RBP11.54□□□□□ -0.56
NUP88-206ENST00000573169 TRIM41Q8WV44 630 aa11.49□□□□□ -0.57
NUP88-206ENST00000573169 PRDM2Q13029 1718 aa11.46□□□□□ -0.57
NUP88-206ENST00000573169 CSRNP3Q8WYN3 585 aa11.46□□□□□ -0.57
NUP88-206ENST00000573169 ZNF608Q9ULD9 1512 aaPredicted RBP11.44□□□□□ -0.58
NUP88-206ENST00000573169 OSCARQ8IYS5 282 aa11.43□□□□□ -0.58
NUP88-206ENST00000573169 TOPBP1Q92547 1522 aa11.42□□□□□ -0.58
NUP88-206ENST00000573169 FOXD4L1Q9NU39 408 aa11.41□□□□□ -0.58
NUP88-206ENST00000573169 IFT140Q96RY7 1462 aa11.4□□□□□ -0.58
NUP88-206ENST00000573169 DNMBPQ6XZF7 1577 aa11.37□□□□□ -0.59
NUP88-206ENST00000573169 ABCC8Q09428 1581 aa11.35□□□□□ -0.59
NUP88-206ENST00000573169 EIF4G3O43432 1585 aaKnown RBP11.33□□□□□ -0.6
NUP88-206ENST00000573169 AQRO60306 1485 aaKnown RBP eCLIP11.33□□□□□ -0.6
NUP88-206ENST00000573169 TARBP1Q13395 1621 aaKnown RBP11.31□□□□□ -0.6
NUP88-206ENST00000573169 ZBTB22O15209 634 aa11.31□□□□□ -0.6
NUP88-206ENST00000573169 POLA1P09884 1462 aaPredicted RBP11.31□□□□□ -0.6
NUP88-206ENST00000573169 RAD54L2Q9Y4B4 1467 aa11.31□□□□□ -0.6
NUP88-206ENST00000573169 SUPT5HO00267 1087 aaKnown RBP11.29□□□□□ -0.6
NUP88-206ENST00000573169 RIMBP3CA6NJZ7 1639 aa11.28□□□□□ -0.6
NUP88-206ENST00000573169 RIMBP3BA6NNM3 1639 aa11.28□□□□□ -0.6
NUP88-206ENST00000573169 RIMBP3Q9UFD9 1639 aa11.28□□□□□ -0.6
NUP88-206ENST00000573169 TDRD9Q8NDG6 1382 aaKnown RBP11.28□□□□□ -0.6
NUP88-206ENST00000573169 SOGA1O94964 1423 aa11.27□□□□□ -0.6
NUP88-206ENST00000573169 FBLN2P98095 1184 aa11.27□□□□□ -0.61
NUP88-206ENST00000573169 FGD5Q6ZNL6 1462 aa11.25□□□□□ -0.61
NUP88-206ENST00000573169 CUX1P39880 1505 aa11.25□□□□□ -0.61
NUP88-206ENST00000573169 CHD1O14646 1710 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms