RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 PHLDB1Q86UU1 1377 aa24.49■■□□□ 1.51
VPS53-215ENST00000573028 SETD5Q9C0A6 1442 aa24.47■■□□□ 1.51
VPS53-215ENST00000573028 BCANQ96GW7 911 aa24.45■■□□□ 1.5
VPS53-215ENST00000573028 TIAM1Q13009 1591 aa24.45■■□□□ 1.5
VPS53-215ENST00000573028 FGD5Q6ZNL6 1462 aa24.44■■□□□ 1.5
VPS53-215ENST00000573028 MAPKBP1O60336 1514 aa24.43■■□□□ 1.5
VPS53-215ENST00000573028 CADPSQ9ULU8 1353 aa24.42■■□□□ 1.5
VPS53-215ENST00000573028 LRRC9Q6ZRR7 1453 aa24.42■■□□□ 1.5
VPS53-215ENST00000573028 FHOD3Q2V2M9 1422 aa24.36■■□□□ 1.49
VPS53-215ENST00000573028 WDR97A6NE52 1622 aa24.33■■□□□ 1.49
VPS53-215ENST00000573028 FHAD1B1AJZ9 1412 aa24.33■■□□□ 1.49
VPS53-215ENST00000573028 FKBP8Q14318 412 aa24.27■■□□□ 1.48
VPS53-215ENST00000573028 RAD54L2Q9Y4B4 1467 aa24.27■■□□□ 1.48
VPS53-215ENST00000573028 TSHZ2Q9NRE2 1034 aa24.27■■□□□ 1.48
VPS53-215ENST00000573028 PCF11O94913 1555 aaKnown RBP24.26■■□□□ 1.47
VPS53-215ENST00000573028 TRIM52Q96A61 297 aa24.26■■□□□ 1.47
VPS53-215ENST00000573028 MAP3K1Q13233 1512 aa24.26■■□□□ 1.47
VPS53-215ENST00000573028 PPP1R15AO75807 674 aaPredicted RBP24.22■■□□□ 1.47
VPS53-215ENST00000573028 FANCD2Q9BXW9 1451 aa24.21■■□□□ 1.47
VPS53-215ENST00000573028 ANP32CO43423 234 aa24.19■■□□□ 1.46
VPS53-215ENST00000573028 PRDM2Q13029 1718 aa24.17■■□□□ 1.46
VPS53-215ENST00000573028 TONSLQ96HA7 1378 aa24.17■■□□□ 1.46
VPS53-215ENST00000573028 MTUS2Q5JR59 1369 aa24.15■■□□□ 1.46
VPS53-215ENST00000573028 NEFLP07196 543 aa24.13■■□□□ 1.45
VPS53-215ENST00000573028 TIMELESSQ9UNS1 1208 aa24.11■■□□□ 1.45
VPS53-215ENST00000573028 CFAP43Q8NDM7 1665 aa24.1■■□□□ 1.45
VPS53-215ENST00000573028 CASKIN1Q8WXD9 1431 aa24.09■■□□□ 1.45
VPS53-215ENST00000573028 FYCO1Q9BQS8 1478 aa24.08■■□□□ 1.45
VPS53-215ENST00000573028 POLA1P09884 1462 aaPredicted RBP24.08■■□□□ 1.44
VPS53-215ENST00000573028 NESP48681 1621 aa24.07■■□□□ 1.44
VPS53-215ENST00000573028 FGD6Q6ZV73 1430 aa24.06■■□□□ 1.44
VPS53-215ENST00000573028 CHIC2Q9UKJ5 165 aa24.05■■□□□ 1.44
VPS53-215ENST00000573028 TDRD9Q8NDG6 1382 aaKnown RBP24.04■■□□□ 1.44
VPS53-215ENST00000573028 CC2D2AQ9P2K1 1620 aa24.04■■□□□ 1.44
VPS53-215ENST00000573028 TOPBP1Q92547 1522 aa24.03■■□□□ 1.44
VPS53-215ENST00000573028 CCDC18Q5T9S5 1454 aa24.03■■□□□ 1.44
VPS53-215ENST00000573028 RRP7BPQ9NSQ0 103 aa24.01■■□□□ 1.43
VPS53-215ENST00000573028 ABCA10Q8WWZ4 1543 aa24.01■■□□□ 1.43
VPS53-215ENST00000573028 FMN1Q68DA7 1419 aa24.01■■□□□ 1.43
VPS53-215ENST00000573028 ARID3CA6NKF2 412 aa24.01■■□□□ 1.43
VPS53-215ENST00000573028 PTPRKQ15262 1439 aa24■■□□□ 1.43
VPS53-215ENST00000573028 CCER2I3L3R5 266 aa24■■□□□ 1.43
VPS53-215ENST00000573028 DNMBPQ6XZF7 1577 aa23.98■■□□□ 1.43
VPS53-215ENST00000573028 EFCAB5A4FU69 1503 aa23.98■■□□□ 1.43
VPS53-215ENST00000573028 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.94■■□□□ 1.42
VPS53-215ENST00000573028 AQRO60306 1485 aaKnown RBP eCLIP23.92■■□□□ 1.427e-8■■■■■ 27.9
VPS53-215ENST00000573028 HNRNPUQ00839 825 aaKnown RBP eCLIP23.92■■□□□ 1.42
VPS53-215ENST00000573028 UACAQ9BZF9 1416 aa23.92■■□□□ 1.42
VPS53-215ENST00000573028 HFM1A2PYH4 1435 aa23.9■■□□□ 1.42
VPS53-215ENST00000573028 IRX6P78412 446 aaPredicted RBP23.89■■□□□ 1.42
VPS53-215ENST00000573028 NCOA2Q15596 1464 aa23.89■■□□□ 1.42
VPS53-215ENST00000573028 SNAPC4Q5SXM2 1469 aa23.89■■□□□ 1.41
VPS53-215ENST00000573028 ANP32EQ9BTT0 268 aa23.88■■□□□ 1.41
VPS53-215ENST00000573028 NAIPQ13075 1403 aa23.87■■□□□ 1.41
VPS53-215ENST00000573028 MYOM3Q5VTT5 1437 aa23.86■■□□□ 1.41
VPS53-215ENST00000573028 CTTNBP2Q8WZ74 1663 aa23.86■■□□□ 1.41
VPS53-215ENST00000573028 CUL7Q14999 1698 aa23.85■■□□□ 1.41
VPS53-215ENST00000573028 PTPN23Q9H3S7 1636 aa23.84■■□□□ 1.41
VPS53-215ENST00000573028 FOXD1Q16676 465 aa23.83■■□□□ 1.41
VPS53-215ENST00000573028 HSPA5P11021 654 aaKnown RBP23.83■■□□□ 1.4
VPS53-215ENST00000573028 RBM19Q9Y4C8 960 aaKnown RBP23.82■■□□□ 1.4
VPS53-215ENST00000573028 URB2Q14146 1524 aaKnown RBP23.8■■□□□ 1.4
VPS53-215ENST00000573028 GAPVD1Q14C86 1478 aa23.8■■□□□ 1.4
VPS53-215ENST00000573028 WASHC2AQ641Q2 1341 aa23.77■■□□□ 1.4
VPS53-215ENST00000573028 DNAJC5BQ9UF47 199 aa23.76■■□□□ 1.39
VPS53-215ENST00000573028 GRIN2BQ13224 1484 aa23.74■■□□□ 1.39
VPS53-215ENST00000573028 CNGB1Q14028 1251 aaPredicted RBP23.74■■□□□ 1.39
VPS53-215ENST00000573028 EIF4G2P78344 907 aaKnown RBP eCLIP23.74■■□□□ 1.392e-8■■■■■ 33.8
VPS53-215ENST00000573028 LRRIQ1Q96JM4 1722 aa23.71■■□□□ 1.39
VPS53-215ENST00000573028 L3MBTL2Q969R5 705 aa23.71■■□□□ 1.39
VPS53-215ENST00000573028 SUPT6HQ7KZ85 1726 aaKnown RBP23.7■■□□□ 1.39
VPS53-215ENST00000573028 MPHOSPH9Q99550 1183 aa23.7■■□□□ 1.38
VPS53-215ENST00000573028 CCDC184Q52MB2 194 aa23.69■■□□□ 1.38
VPS53-215ENST00000573028 FAM9BQ8IZU0 186 aa23.69■■□□□ 1.38
VPS53-215ENST00000573028 EHBP1L1Q8N3D4 1523 aa23.68■■□□□ 1.38
VPS53-215ENST00000573028 SAMD9Q5K651 1589 aa23.68■■□□□ 1.38
VPS53-215ENST00000573028 MAGI3Q5TCQ9 1506 aa23.67■■□□□ 1.38
VPS53-215ENST00000573028 C11orf95C9JLR9 678 aaPredicted RBP23.63■■□□□ 1.37
VPS53-215ENST00000573028 UGGT2Q9NYU1 1516 aa23.63■■□□□ 1.37
VPS53-215ENST00000573028 KDM5BQ9UGL1 1544 aa23.63■■□□□ 1.37
VPS53-215ENST00000573028 ABCA5Q8WWZ7 1642 aa23.61■■□□□ 1.37
VPS53-215ENST00000573028 POLR3GLQ9BT43 218 aa23.61■■□□□ 1.37
VPS53-215ENST00000573028 MRS2Q9HD23 443 aa23.6■■□□□ 1.37
VPS53-215ENST00000573028 PDS5BQ9NTI5 1447 aa23.6■■□□□ 1.37
VPS53-215ENST00000573028 CDK13Q14004 1512 aaKnown RBP23.6■■□□□ 1.37
VPS53-215ENST00000573028 KDM6BO15054 1643 aa23.58■■□□□ 1.37
VPS53-215ENST00000573028 CDK11AQ9UQ88 783 aaPredicted RBP23.58■■□□□ 1.37
VPS53-215ENST00000573028 DENND4BO75064 1496 aaPredicted RBP23.57■■□□□ 1.36
VPS53-215ENST00000573028 ZNF644Q9H582 1327 aaPredicted RBP23.57■■□□□ 1.36
VPS53-215ENST00000573028 LAMC3Q9Y6N6 1575 aa23.56■■□□□ 1.36
VPS53-215ENST00000573028 SLC4A1APQ9BWU0 796 aaKnown RBP23.56■■□□□ 1.36
VPS53-215ENST00000573028 NBPF8Q3BBV2 869 aa23.55■■□□□ 1.36
VPS53-215ENST00000573028 ZNF326Q5BKZ1 582 aaKnown RBP23.55■■□□□ 1.36
VPS53-215ENST00000573028 EPRSP07814 1512 aaKnown RBP23.54■■□□□ 1.36
VPS53-215ENST00000573028 THOC2Q8NI27 1593 aaKnown RBP23.54■■□□□ 1.36
VPS53-215ENST00000573028 PRKRIP1Q9H875 184 aaPredicted RBP23.54■■□□□ 1.36
VPS53-215ENST00000573028 CNTLNQ9NXG0 1405 aa23.52■■□□□ 1.36
VPS53-215ENST00000573028 SENP3-EIF4A1A0A087X0R7 540 aa23.52■■□□□ 1.35
VPS53-215ENST00000573028 CCDC7Q96M83 1385 aa23.5■■□□□ 1.35
VPS53-215ENST00000573028 ARHGEF11O15085 1522 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms