RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 TIMELESSQ9UNS1 1208 aa15.33■□□□□ 0.04
CCDC40-207ENST00000572253 MAPKBP1O60336 1514 aa15.32■□□□□ 0.04
CCDC40-207ENST00000572253 CADPSQ9ULU8 1353 aa15.31■□□□□ 0.04
CCDC40-207ENST00000572253 PRDM2Q13029 1718 aa15.31■□□□□ 0.04
CCDC40-207ENST00000572253 FGD5Q6ZNL6 1462 aa15.29■□□□□ 0.04
CCDC40-207ENST00000572253 PHLDB1Q86UU1 1377 aa15.29■□□□□ 0.04
CCDC40-207ENST00000572253 DDX10Q13206 875 aaKnown RBP15.28■□□□□ 0.04
CCDC40-207ENST00000572253 P3H3Q8IVL6 736 aa15.26■□□□□ 0.03
CCDC40-207ENST00000572253 SIN3AQ96ST3 1273 aa15.26■□□□□ 0.03
CCDC40-207ENST00000572253 NEFLP07196 543 aa15.25■□□□□ 0.03
CCDC40-207ENST00000572253 CFAP43Q8NDM7 1665 aa15.22■□□□□ 0.03
CCDC40-207ENST00000572253 TSHZ2Q9NRE2 1034 aa15.22■□□□□ 0.03
CCDC40-207ENST00000572253 WDR97A6NE52 1622 aa15.22■□□□□ 0.03
CCDC40-207ENST00000572253 ANP32CO43423 234 aa15.21■□□□□ 0.03
CCDC40-207ENST00000572253 KCNH8Q96L42 1107 aa15.21■□□□□ 0.03
CCDC40-207ENST00000572253 PCF11O94913 1555 aaKnown RBP15.21■□□□□ 0.03
CCDC40-207ENST00000572253 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.2■□□□□ 0.02
CCDC40-207ENST00000572253 FYCO1Q9BQS8 1478 aa15.2■□□□□ 0.02
CCDC40-207ENST00000572253 CCER2I3L3R5 266 aa15.19■□□□□ 0.02
CCDC40-207ENST00000572253 EFCAB5A4FU69 1503 aa15.19■□□□□ 0.02
CCDC40-207ENST00000572253 PPP1R15AO75807 674 aaPredicted RBP15.18■□□□□ 0.02
CCDC40-207ENST00000572253 FHOD3Q2V2M9 1422 aa15.18■□□□□ 0.02
CCDC40-207ENST00000572253 FKBP8Q14318 412 aa15.17■□□□□ 0.02
CCDC40-207ENST00000572253 TONSLQ96HA7 1378 aa15.17■□□□□ 0.02
CCDC40-207ENST00000572253 CASKIN1Q8WXD9 1431 aa15.17■□□□□ 0.02
CCDC40-207ENST00000572253 AQRO60306 1485 aaKnown RBP eCLIP15.16■□□□□ 0.02
CCDC40-207ENST00000572253 BCANQ96GW7 911 aa15.16■□□□□ 0.02
CCDC40-207ENST00000572253 FANCD2Q9BXW9 1451 aa15.15■□□□□ 0.02
CCDC40-207ENST00000572253 FMN1Q68DA7 1419 aa15.14■□□□□ 0.01
CCDC40-207ENST00000572253 MTUS2Q5JR59 1369 aa15.13■□□□□ 0.01
CCDC40-207ENST00000572253 FGD6Q6ZV73 1430 aa15.11■□□□□ 0.01
CCDC40-207ENST00000572253 ABCA10Q8WWZ4 1543 aa15.11■□□□□ 0.01
CCDC40-207ENST00000572253 DNMBPQ6XZF7 1577 aa15.1■□□□□ 0.01
CCDC40-207ENST00000572253 HIRIP3Q9BW71 556 aaPredicted RBP15.1■□□□□ 0.01
CCDC40-207ENST00000572253 CC2D2AQ9P2K1 1620 aa15.09■□□□□ 0.01
CCDC40-207ENST00000572253 CCDC18Q5T9S5 1454 aa15.09■□□□□ 0.01
CCDC40-207ENST00000572253 RAD54L2Q9Y4B4 1467 aa15.09■□□□□ 0.01
CCDC40-207ENST00000572253 CUL7Q14999 1698 aa15.08■□□□□ 0.01
CCDC40-207ENST00000572253 ANP32EQ9BTT0 268 aa15.08■□□□□ 0
CCDC40-207ENST00000572253 TRIM52Q96A61 297 aa15.07■□□□□ 0
CCDC40-207ENST00000572253 UACAQ9BZF9 1416 aa15.07■□□□□ 0
CCDC40-207ENST00000572253 POLA1P09884 1462 aaPredicted RBP15.06■□□□□ 0
CCDC40-207ENST00000572253 TOPBP1Q92547 1522 aa15.06■□□□□ 0
CCDC40-207ENST00000572253 HFM1A2PYH4 1435 aa15.05■□□□□ 0
CCDC40-207ENST00000572253 CTTNBP2Q8WZ74 1663 aa15.03■□□□□ -0
CCDC40-207ENST00000572253 MYOM3Q5VTT5 1437 aa15□□□□□ -0.01
CCDC40-207ENST00000572253 SNAPC4Q5SXM2 1469 aa14.99□□□□□ -0.01
CCDC40-207ENST00000572253 PTPN23Q9H3S7 1636 aa14.99□□□□□ -0.01
CCDC40-207ENST00000572253 NCOA2Q15596 1464 aa14.99□□□□□ -0.01
CCDC40-207ENST00000572253 NAIPQ13075 1403 aa14.97□□□□□ -0.01
CCDC40-207ENST00000572253 PTPRKQ15262 1439 aa14.96□□□□□ -0.01
CCDC40-207ENST00000572253 EHBP1L1Q8N3D4 1523 aa14.96□□□□□ -0.02
CCDC40-207ENST00000572253 THOC2Q8NI27 1593 aaKnown RBP14.95□□□□□ -0.02
CCDC40-207ENST00000572253 HNRNPUQ00839 825 aaKnown RBP eCLIP14.95□□□□□ -0.02
CCDC40-207ENST00000572253 SUPT6HQ7KZ85 1726 aaKnown RBP14.95□□□□□ -0.02
CCDC40-207ENST00000572253 RBM19Q9Y4C8 960 aaKnown RBP14.93□□□□□ -0.02
CCDC40-207ENST00000572253 GRIN2BQ13224 1484 aa14.93□□□□□ -0.02
CCDC40-207ENST00000572253 TDRD9Q8NDG6 1382 aaKnown RBP14.92□□□□□ -0.02
CCDC40-207ENST00000572253 SAMD9Q5K651 1589 aa14.92□□□□□ -0.02
CCDC40-207ENST00000572253 RRP7BPQ9NSQ0 103 aa14.92□□□□□ -0.02
CCDC40-207ENST00000572253 NESP48681 1621 aa14.91□□□□□ -0.02
CCDC40-207ENST00000572253 EIF4G2P78344 907 aaKnown RBP eCLIP14.91□□□□□ -0.02
CCDC40-207ENST00000572253 GAPVD1Q14C86 1478 aa14.91□□□□□ -0.02
CCDC40-207ENST00000572253 HSPA5P11021 654 aaKnown RBP14.9□□□□□ -0.02
CCDC40-207ENST00000572253 CHIC2Q9UKJ5 165 aa14.89□□□□□ -0.03
CCDC40-207ENST00000572253 CDK11AQ9UQ88 783 aaPredicted RBP14.88□□□□□ -0.03
CCDC40-207ENST00000572253 UGGT2Q9NYU1 1516 aa14.87□□□□□ -0.03
CCDC40-207ENST00000572253 URB2Q14146 1524 aaKnown RBP14.86□□□□□ -0.03
CCDC40-207ENST00000572253 LAMC3Q9Y6N6 1575 aa14.86□□□□□ -0.03
CCDC40-207ENST00000572253 ABCA5Q8WWZ7 1642 aa14.85□□□□□ -0.03
CCDC40-207ENST00000572253 ERICH6BQ5W0A0 696 aa14.85□□□□□ -0.03
CCDC40-207ENST00000572253 AKNAQ7Z591 1439 aa14.85□□□□□ -0.03
CCDC40-207ENST00000572253 KIF21AQ7Z4S6 1674 aa14.84□□□□□ -0.03
CCDC40-207ENST00000572253 WASHC2AQ641Q2 1341 aa14.84□□□□□ -0.03
CCDC40-207ENST00000572253 TCOF1Q13428 1488 aaKnown RBP14.84□□□□□ -0.03
CCDC40-207ENST00000572253 PDS5BQ9NTI5 1447 aa14.84□□□□□ -0.03
CCDC40-207ENST00000572253 MPHOSPH9Q99550 1183 aa14.83□□□□□ -0.04
CCDC40-207ENST00000572253 HECW1Q76N89 1606 aa14.82□□□□□ -0.04
CCDC40-207ENST00000572253 CNTLNQ9NXG0 1405 aa14.82□□□□□ -0.04
CCDC40-207ENST00000572253 ARHGEF11O15085 1522 aa14.82□□□□□ -0.04
CCDC40-207ENST00000572253 KDM5BQ9UGL1 1544 aa14.82□□□□□ -0.04
CCDC40-207ENST00000572253 MIA2Q96PC5 1412 aa14.81□□□□□ -0.04
CCDC40-207ENST00000572253 LRRIQ1Q96JM4 1722 aa14.81□□□□□ -0.04
CCDC40-207ENST00000572253 ERICH6Q7L0X2 663 aa14.81□□□□□ -0.04
CCDC40-207ENST00000572253 GCC2Q8IWJ2 1684 aa14.8□□□□□ -0.04
CCDC40-207ENST00000572253 L3MBTL2Q969R5 705 aa14.79□□□□□ -0.04
CCDC40-207ENST00000572253 IRX6P78412 446 aaPredicted RBP14.79□□□□□ -0.04
CCDC40-207ENST00000572253 PPP4R2Q9NY27 417 aa14.78□□□□□ -0.04
CCDC40-207ENST00000572253 MRS2Q9HD23 443 aa14.77□□□□□ -0.04
CCDC40-207ENST00000572253 EPRSP07814 1512 aaKnown RBP14.77□□□□□ -0.05
CCDC40-207ENST00000572253 MAGI3Q5TCQ9 1506 aa14.77□□□□□ -0.05
CCDC40-207ENST00000572253 CCDC7Q96M83 1385 aa14.76□□□□□ -0.05
CCDC40-207ENST00000572253 FAM9BQ8IZU0 186 aa14.75□□□□□ -0.05
CCDC40-207ENST00000572253 FANCIQ9NVI1 1328 aa14.75□□□□□ -0.05
CCDC40-207ENST00000572253 PRKRIP1Q9H875 184 aaPredicted RBP14.75□□□□□ -0.05
CCDC40-207ENST00000572253 NCOA1Q15788 1441 aa14.73□□□□□ -0.05
CCDC40-207ENST00000572253 IQGAP2Q13576 1575 aa14.73□□□□□ -0.05
CCDC40-207ENST00000572253 ARID3CA6NKF2 412 aa14.73□□□□□ -0.05
CCDC40-207ENST00000572253 ROCK1Q13464 1354 aa14.72□□□□□ -0.05
CCDC40-207ENST00000572253 FOXD1Q16676 465 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms