RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 NISCHQ9Y2I1 1504 aa21.53■■□□□ 1.04
CCDC40-207ENST00000572253 SHROOM4Q9ULL8 1493 aa18.54■□□□□ 0.56
CCDC40-207ENST00000572253 SUPT5HO00267 1087 aaKnown RBP18.34■□□□□ 0.53
CCDC40-207ENST00000572253 ZCCHC6Q5VYS8 1495 aaKnown RBP18.24■□□□□ 0.51
CCDC40-207ENST00000572253 CCDC180Q9P1Z9 1646 aa18.2■□□□□ 0.5
CCDC40-207ENST00000572253 DCAF8L2P0C7V8 631 aa17.93■□□□□ 0.46
CCDC40-207ENST00000572253 CHIC1Q5VXU3 224 aa17.89■□□□□ 0.45
CCDC40-207ENST00000572253 MYO15BQ96JP2 1530 aa17.75■□□□□ 0.43
CCDC40-207ENST00000572253 HRCP23327 699 aa17.74■□□□□ 0.43
CCDC40-207ENST00000572253 DCAF1Q9Y4B6 1507 aa17.68■□□□□ 0.42
CCDC40-207ENST00000572253 PCGF6Q9BYE7 350 aa17.59■□□□□ 0.41
CCDC40-207ENST00000572253 LOC105371045A0A1W2PR82 267 aa17.33■□□□□ 0.37
CCDC40-207ENST00000572253 TRIM26Q12899 539 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-207ENST00000572253 ABCC9O60706 1549 aa17.24■□□□□ 0.35
CCDC40-207ENST00000572253 PPARGC1BQ86YN6 1023 aaKnown RBP17.24■□□□□ 0.35
CCDC40-207ENST00000572253 RSF1Q96T23 1441 aaPredicted RBP17.12■□□□□ 0.33
CCDC40-207ENST00000572253 TRIM41Q8WV44 630 aa17.11■□□□□ 0.33
CCDC40-207ENST00000572253 SCRIBQ14160 1630 aa17.09■□□□□ 0.33
CCDC40-207ENST00000572253 ZEB1P37275 1124 aaPredicted RBP17.07■□□□□ 0.32
CCDC40-207ENST00000572253 RB1CC1Q8TDY2 1594 aa16.98■□□□□ 0.31
CCDC40-207ENST00000572253 FAM9AQ8IZU1 332 aaPredicted RBP16.94■□□□□ 0.3
CCDC40-207ENST00000572253 NACADO15069 1562 aa16.83■□□□□ 0.28
CCDC40-207ENST00000572253 EHMT2Q96KQ7 1210 aa16.77■□□□□ 0.27
CCDC40-207ENST00000572253 CECR2Q9BXF3 1484 aa16.74■□□□□ 0.27
CCDC40-207ENST00000572253 MROH2BQ7Z745 1585 aa16.71■□□□□ 0.27
CCDC40-207ENST00000572253 WIZO95785 1651 aa16.61■□□□□ 0.25
CCDC40-207ENST00000572253 BAZ1AQ9NRL2 1556 aaPredicted RBP16.58■□□□□ 0.24
CCDC40-207ENST00000572253 PELP1Q8IZL8 1130 aaKnown RBP16.57■□□□□ 0.24
CCDC40-207ENST00000572253 CCER1Q8TC90 406 aaPredicted RBP16.53■□□□□ 0.24
CCDC40-207ENST00000572253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.46■□□□□ 0.23
CCDC40-207ENST00000572253 EIF4G1Q04637 1599 aaKnown RBP16.44■□□□□ 0.22
CCDC40-207ENST00000572253 TOP2AP11388 1531 aaKnown RBP16.43■□□□□ 0.22
CCDC40-207ENST00000572253 SCAF1Q9H7N4 1312 aaKnown RBP16.41■□□□□ 0.22
CCDC40-207ENST00000572253 WRNQ14191 1432 aaPredicted RBP eCLIP16.37■□□□□ 0.21
CCDC40-207ENST00000572253 CCDC88BA6NC98 1476 aa16.35■□□□□ 0.21
CCDC40-207ENST00000572253 EEA1Q15075 1411 aa16.34■□□□□ 0.21
CCDC40-207ENST00000572253 CEP162Q5TB80 1403 aa16.34■□□□□ 0.21
CCDC40-207ENST00000572253 SMARCA4P51532 1647 aa16.34■□□□□ 0.21
CCDC40-207ENST00000572253 ABCC8Q09428 1581 aa16.34■□□□□ 0.21
CCDC40-207ENST00000572253 TNIKQ9UKE5 1360 aa16.33■□□□□ 0.2
CCDC40-207ENST00000572253 TTBK1Q5TCY1 1321 aaPredicted RBP16.3■□□□□ 0.2
CCDC40-207ENST00000572253 SMARCA2P51531 1590 aa16.3■□□□□ 0.2
CCDC40-207ENST00000572253 CENPBP07199 599 aaPredicted RBP16.29■□□□□ 0.2
CCDC40-207ENST00000572253 UBTFP17480 764 aaKnown RBP16.29■□□□□ 0.2
CCDC40-207ENST00000572253 CSRNP3Q8WYN3 585 aa16.29■□□□□ 0.2
CCDC40-207ENST00000572253 DIEXFQ68CQ4 756 aaKnown RBP16.28■□□□□ 0.2
CCDC40-207ENST00000572253 ACIN1Q9UKV3 1341 aaKnown RBP16.28■□□□□ 0.2
CCDC40-207ENST00000572253 SOGA1O94964 1423 aa16.25■□□□□ 0.19
CCDC40-207ENST00000572253 GOLGA3Q08378 1498 aa16.21■□□□□ 0.18
CCDC40-207ENST00000572253 NEUROD1Q13562 356 aa16.17■□□□□ 0.18
CCDC40-207ENST00000572253 ZNF316A6NFI3 1004 aaPredicted RBP16.12■□□□□ 0.17
CCDC40-207ENST00000572253 RUSC2Q8N2Y8 1516 aa16.11■□□□□ 0.17
CCDC40-207ENST00000572253 UNC13AQ9UPW8 1703 aa16.1■□□□□ 0.17
CCDC40-207ENST00000572253 CEP164Q9UPV0 1460 aa16.09■□□□□ 0.17
CCDC40-207ENST00000572253 APLP2Q06481 763 aa16.08■□□□□ 0.17
CCDC40-207ENST00000572253 GTF3C3Q9Y5Q9 886 aa16.08■□□□□ 0.17
CCDC40-207ENST00000572253 PABPN1Q86U42 306 aaKnown RBP eCLIP16.04■□□□□ 0.16
CCDC40-207ENST00000572253 CLIP1P30622 1438 aa16.03■□□□□ 0.16
CCDC40-207ENST00000572253 HNRNPUL2Q1KMD3 747 aaKnown RBP16.02■□□□□ 0.15
CCDC40-207ENST00000572253 KIF21BO75037 1637 aa16.01■□□□□ 0.15
CCDC40-207ENST00000572253 PEG3Q9GZU2 1588 aa16■□□□□ 0.15
CCDC40-207ENST00000572253 VPS8Q8N3P4 1428 aa15.97■□□□□ 0.15
CCDC40-207ENST00000572253 BAZ1BQ9UIG0 1483 aaKnown RBP15.96■□□□□ 0.14
CCDC40-207ENST00000572253 SYNJ1O43426 1573 aa15.95■□□□□ 0.14
CCDC40-207ENST00000572253 BICRAQ9NZM4 1560 aa15.94■□□□□ 0.14
CCDC40-207ENST00000572253 YTHDC1Q96MU7 727 aaKnown RBP15.91■□□□□ 0.14
CCDC40-207ENST00000572253 ATAD2BQ9ULI0 1458 aa15.89■□□□□ 0.13
CCDC40-207ENST00000572253 RANGAP1P46060 587 aaPredicted RBP15.86■□□□□ 0.13
CCDC40-207ENST00000572253 RAPGEF2Q9Y4G8 1499 aa15.86■□□□□ 0.13
CCDC40-207ENST00000572253 MYT1Q01538 1121 aa15.85■□□□□ 0.13
CCDC40-207ENST00000572253 MIER1Q8N108 512 aa15.85■□□□□ 0.13
CCDC40-207ENST00000572253 CLSPNQ9HAW4 1339 aa15.8■□□□□ 0.12
CCDC40-207ENST00000572253 TOP2BQ02880 1626 aa15.77■□□□□ 0.12
CCDC40-207ENST00000572253 ERICH3Q5RHP9 1530 aa15.73■□□□□ 0.11
CCDC40-207ENST00000572253 PRXQ9BXM0 1461 aa15.69■□□□□ 0.1
CCDC40-207ENST00000572253 BIVM-ERCC5R4GMW8 1640 aa15.69■□□□□ 0.1
CCDC40-207ENST00000572253 DHX57Q6P158 1386 aaKnown RBP15.67■□□□□ 0.1
CCDC40-207ENST00000572253 KIF27Q86VH2 1401 aa15.66■□□□□ 0.1
CCDC40-207ENST00000572253 ARAP1Q96P48 1450 aa15.65■□□□□ 0.1
CCDC40-207ENST00000572253 KANK4Q5T7N3 995 aaPredicted RBP15.61■□□□□ 0.09
CCDC40-207ENST00000572253 RRBP1Q9P2E9 1410 aaKnown RBP15.6■□□□□ 0.09
CCDC40-207ENST00000572253 CCNB3Q8WWL7 1395 aa15.57■□□□□ 0.08
CCDC40-207ENST00000572253 HMGXB3Q12766 1538 aa15.56■□□□□ 0.08
CCDC40-207ENST00000572253 NCAPD3P42695 1498 aa15.56■□□□□ 0.08
CCDC40-207ENST00000572253 CUX1P39880 1505 aa15.55■□□□□ 0.08
CCDC40-207ENST00000572253 ITGAEP38570 1179 aa15.52■□□□□ 0.08
CCDC40-207ENST00000572253 CUX2O14529 1486 aa15.52■□□□□ 0.07
CCDC40-207ENST00000572253 ARHGAP35Q9NRY4 1499 aa15.5■□□□□ 0.07
CCDC40-207ENST00000572253 CFTRP13569 1480 aa15.48■□□□□ 0.07
CCDC40-207ENST00000572253 SUPT16HQ9Y5B9 1047 aaKnown RBP15.43■□□□□ 0.06
CCDC40-207ENST00000572253 RAB3GAP2Q9H2M9 1393 aa15.43■□□□□ 0.06
CCDC40-207ENST00000572253 MAP3K1Q13233 1512 aa15.41■□□□□ 0.06
CCDC40-207ENST00000572253 IGF1RP08069 1367 aa15.39■□□□□ 0.06
CCDC40-207ENST00000572253 SETD5Q9C0A6 1442 aa15.39■□□□□ 0.05
CCDC40-207ENST00000572253 CARMIL1Q5VZK9 1371 aa15.39■□□□□ 0.05
CCDC40-207ENST00000572253 TIAM1Q13009 1591 aa15.38■□□□□ 0.05
CCDC40-207ENST00000572253 FHAD1B1AJZ9 1412 aa15.37■□□□□ 0.05
CCDC40-207ENST00000572253 FAM50AQ14320 339 aaKnown RBP15.37■□□□□ 0.05
CCDC40-207ENST00000572253 LRRC9Q6ZRR7 1453 aa15.34■□□□□ 0.05
CCDC40-207ENST00000572253 ATP1B4Q9UN42 357 aaPredicted RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms