RNA–Protein interactions for RNA: ENST00000570756.5

SMG6-207, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 2,426 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-207ENST00000570756 BIVM-ERCC5R4GMW8 1640 aa21.88■■□□□ 1.09
SMG6-207ENST00000570756 PDS5BQ9NTI5 1447 aa21.87■■□□□ 1.09
SMG6-207ENST00000570756 RBM19Q9Y4C8 960 aaKnown RBP21.86■■□□□ 1.09
SMG6-207ENST00000570756 MAPKBP1O60336 1514 aa21.85■■□□□ 1.09
SMG6-207ENST00000570756 ERCC6Q03468 1493 aa21.83■■□□□ 1.08
SMG6-207ENST00000570756 RAB3GAP2Q9H2M9 1393 aa21.83■■□□□ 1.08
SMG6-207ENST00000570756 DDX10Q13206 875 aaKnown RBP21.79■■□□□ 1.08
SMG6-207ENST00000570756 CCER2I3L3R5 266 aa21.78■■□□□ 1.08
SMG6-207ENST00000570756 CUX1P39880 1505 aa21.76■■□□□ 1.07
SMG6-207ENST00000570756 ITGAEP38570 1179 aa21.76■■□□□ 1.07
SMG6-207ENST00000570756 TIMELESSQ9UNS1 1208 aa21.74■■□□□ 1.07
SMG6-207ENST00000570756 WDR97A6NE52 1622 aa21.74■■□□□ 1.07
SMG6-207ENST00000570756 SETD5Q9C0A6 1442 aa21.73■■□□□ 1.07
SMG6-207ENST00000570756 PPP1R15AO75807 674 aaPredicted RBP21.73■■□□□ 1.07
SMG6-207ENST00000570756 URB2Q14146 1524 aaKnown RBP21.73■■□□□ 1.07
SMG6-207ENST00000570756 ARHGAP35Q9NRY4 1499 aa21.71■■□□□ 1.07
SMG6-207ENST00000570756 KIF27Q86VH2 1401 aa21.7■■□□□ 1.06
SMG6-207ENST00000570756 MAP3K1Q13233 1512 aa21.7■■□□□ 1.06
SMG6-207ENST00000570756 ANP32CO43423 234 aa21.69■■□□□ 1.06
SMG6-207ENST00000570756 TOPBP1Q92547 1522 aa21.65■■□□□ 1.06
SMG6-207ENST00000570756 TIAM1Q13009 1591 aa21.64■■□□□ 1.06
SMG6-207ENST00000570756 TRIM52Q96A61 297 aa21.64■■□□□ 1.05
SMG6-207ENST00000570756 MRC2Q9UBG0 1479 aa21.64■■□□□ 1.05
SMG6-207ENST00000570756 FANCIQ9NVI1 1328 aa21.61■■□□□ 1.05
SMG6-207ENST00000570756 DNMBPQ6XZF7 1577 aa21.61■■□□□ 1.05
SMG6-207ENST00000570756 THOC2Q8NI27 1593 aaKnown RBP21.6■■□□□ 1.05
SMG6-207ENST00000570756 SIN3AQ96ST3 1273 aa21.59■■□□□ 1.05
SMG6-207ENST00000570756 FGD5Q6ZNL6 1462 aa21.59■■□□□ 1.05
SMG6-207ENST00000570756 MSH5O43196 834 aa21.56■■□□□ 1.04
SMG6-207ENST00000570756 LRRC9Q6ZRR7 1453 aa21.55■■□□□ 1.04
SMG6-207ENST00000570756 RAD54L2Q9Y4B4 1467 aa21.55■■□□□ 1.04
SMG6-207ENST00000570756 ERICH6Q7L0X2 663 aa21.55■■□□□ 1.04
SMG6-207ENST00000570756 CDK11AQ9UQ88 783 aaPredicted RBP21.54■■□□□ 1.04
SMG6-207ENST00000570756 POLA1P09884 1462 aaPredicted RBP21.54■■□□□ 1.04
SMG6-207ENST00000570756 WDR62O43379 1518 aa21.53■■□□□ 1.04
SMG6-207ENST00000570756 MYT1LQ9UL68 1186 aa21.51■■□□□ 1.03
SMG6-207ENST00000570756 PHLDB1Q86UU1 1377 aa21.5■■□□□ 1.03
SMG6-207ENST00000570756 FAM50AQ14320 339 aaKnown RBP21.48■■□□□ 1.03
SMG6-207ENST00000570756 HIRIP3Q9BW71 556 aaPredicted RBP21.46■■□□□ 1.03
SMG6-207ENST00000570756 ERICH6BQ5W0A0 696 aa21.45■■□□□ 1.02
SMG6-207ENST00000570756 CFAP43Q8NDM7 1665 aa21.45■■□□□ 1.02
SMG6-207ENST00000570756 FHAD1B1AJZ9 1412 aa21.45■■□□□ 1.02
SMG6-207ENST00000570756 TONSLQ96HA7 1378 aa21.42■■□□□ 1.02
SMG6-207ENST00000570756 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.41■■□□□ 1.02
SMG6-207ENST00000570756 HNRNPUQ00839 825 aaKnown RBP eCLIP21.39■■□□□ 1.01
SMG6-207ENST00000570756 TDRD9Q8NDG6 1382 aaKnown RBP21.38■■□□□ 1.01
SMG6-207ENST00000570756 TARBP1Q13395 1621 aaKnown RBP21.36■■□□□ 1.01
SMG6-207ENST00000570756 ZNF608Q9ULD9 1512 aaPredicted RBP21.35■■□□□ 1.01
SMG6-207ENST00000570756 IGF1RP08069 1367 aa21.34■■□□□ 1.01
SMG6-207ENST00000570756 PPP4R2Q9NY27 417 aa21.33■■□□□ 1
SMG6-207ENST00000570756 PCF11O94913 1555 aaKnown RBP21.32■■□□□ 1
SMG6-207ENST00000570756 AQRO60306 1485 aaKnown RBP eCLIP21.31■■□□□ 1
SMG6-207ENST00000570756 ABCA10Q8WWZ4 1543 aa21.3■■□□□ 1
SMG6-207ENST00000570756 CARMIL1Q5VZK9 1371 aa21.29■■□□□ 1
SMG6-207ENST00000570756 IRX6P78412 446 aaPredicted RBP21.29■■□□□ 1
SMG6-207ENST00000570756 IFT140Q96RY7 1462 aa21.28■■□□□ 1
SMG6-207ENST00000570756 CCDC18Q5T9S5 1454 aa21.27■■□□□ 1
SMG6-207ENST00000570756 UACAQ9BZF9 1416 aa21.27■■□□□ 1
SMG6-207ENST00000570756 FYCO1Q9BQS8 1478 aa21.26■□□□□ 0.99
SMG6-207ENST00000570756 HFM1A2PYH4 1435 aa21.22■□□□□ 0.99
SMG6-207ENST00000570756 DEKP35659 375 aaKnown RBP21.2■□□□□ 0.98
SMG6-207ENST00000570756 FGD6Q6ZV73 1430 aa21.2■□□□□ 0.98
SMG6-207ENST00000570756 GAPVD1Q14C86 1478 aa21.2■□□□□ 0.98
SMG6-207ENST00000570756 ATP1B4Q9UN42 357 aaPredicted RBP21.19■□□□□ 0.98
SMG6-207ENST00000570756 CASKIN1Q8WXD9 1431 aa21.19■□□□□ 0.98
SMG6-207ENST00000570756 EIF4G3O43432 1585 aaKnown RBP21.19■□□□□ 0.98
SMG6-207ENST00000570756 ABCA5Q8WWZ7 1642 aa21.18■□□□□ 0.98
SMG6-207ENST00000570756 PTPN23Q9H3S7 1636 aa21.18■□□□□ 0.98
SMG6-207ENST00000570756 EFCAB5A4FU69 1503 aa21.17■□□□□ 0.98
SMG6-207ENST00000570756 KDM5BQ9UGL1 1544 aa21.14■□□□□ 0.98
SMG6-207ENST00000570756 NCOA2Q15596 1464 aa21.14■□□□□ 0.97
SMG6-207ENST00000570756 WASHC2AQ641Q2 1341 aa21.13■□□□□ 0.97
SMG6-207ENST00000570756 NOP58Q9Y2X3 529 aaKnown RBP21.13■□□□□ 0.97
SMG6-207ENST00000570756 FHOD3Q2V2M9 1422 aa21.12■□□□□ 0.97
SMG6-207ENST00000570756 CNTLNQ9NXG0 1405 aa21.12■□□□□ 0.97
SMG6-207ENST00000570756 P3H3Q8IVL6 736 aa21.12■□□□□ 0.97
SMG6-207ENST00000570756 ZBED9Q6R2W3 1325 aa21.11■□□□□ 0.97
SMG6-207ENST00000570756 PBRM1Q86U86 1689 aa21.1■□□□□ 0.97
SMG6-207ENST00000570756 HSPA5P11021 654 aaKnown RBP21.09■□□□□ 0.97
SMG6-207ENST00000570756 B4GALNT3Q6L9W6 998 aa21.09■□□□□ 0.97
SMG6-207ENST00000570756 NAIPQ13075 1403 aa21.08■□□□□ 0.97
SMG6-207ENST00000570756 FMN1Q68DA7 1419 aa21.08■□□□□ 0.96
SMG6-207ENST00000570756 EIF4G2P78344 907 aaKnown RBP eCLIP21.07■□□□□ 0.96
SMG6-207ENST00000570756 PTPRKQ15262 1439 aa21.06■□□□□ 0.96
SMG6-207ENST00000570756 GRIN2BQ13224 1484 aa21.06■□□□□ 0.96
SMG6-207ENST00000570756 SNAPC4Q5SXM2 1469 aa21.05■□□□□ 0.96
SMG6-207ENST00000570756 MTUS2Q5JR59 1369 aa21.04■□□□□ 0.96
SMG6-207ENST00000570756 FBLN2P98095 1184 aa21.04■□□□□ 0.96
SMG6-207ENST00000570756 PRKRIP1Q9H875 184 aaPredicted RBP21.02■□□□□ 0.96
SMG6-207ENST00000570756 MRS2Q9HD23 443 aa21.01■□□□□ 0.95
SMG6-207ENST00000570756 FAM9BQ8IZU0 186 aa21■□□□□ 0.95
SMG6-207ENST00000570756 MYOM3Q5VTT5 1437 aa21■□□□□ 0.95
SMG6-207ENST00000570756 CCDC184Q52MB2 194 aa20.99■□□□□ 0.95
SMG6-207ENST00000570756 HECW1Q76N89 1606 aa20.98■□□□□ 0.95
SMG6-207ENST00000570756 CTTNBP2Q8WZ74 1663 aa20.98■□□□□ 0.95
SMG6-207ENST00000570756 NCOA1Q15788 1441 aa20.98■□□□□ 0.95
SMG6-207ENST00000570756 NBR1Q14596 966 aa20.97■□□□□ 0.95
SMG6-207ENST00000570756 CCDC7Q96M83 1385 aa20.97■□□□□ 0.95
SMG6-207ENST00000570756 ANP32AP39687 249 aaKnown RBP20.97■□□□□ 0.95
SMG6-207ENST00000570756 ADAMTS12P58397 1594 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms