RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 CARMIL1Q5VZK9 1371 aa23.41■■□□□ 1.34
LINC00554-201ENST00000564841 VPS8Q8N3P4 1428 aa23.39■■□□□ 1.34
LINC00554-201ENST00000564841 TDRD9Q8NDG6 1382 aaKnown RBP23.39■■□□□ 1.34
LINC00554-201ENST00000564841 TOPBP1Q92547 1522 aa23.38■■□□□ 1.33
LINC00554-201ENST00000564841 MSH5O43196 834 aa23.36■■□□□ 1.33
LINC00554-201ENST00000564841 POLA1P09884 1462 aaPredicted RBP23.36■■□□□ 1.33
LINC00554-201ENST00000564841 KANK4Q5T7N3 995 aaPredicted RBP23.33■■□□□ 1.33
LINC00554-201ENST00000564841 PDS5BQ9NTI5 1447 aa23.32■■□□□ 1.32
LINC00554-201ENST00000564841 ERICH3Q5RHP9 1530 aa23.31■■□□□ 1.32
LINC00554-201ENST00000564841 URB2Q14146 1524 aaKnown RBP23.31■■□□□ 1.32
LINC00554-201ENST00000564841 DNMBPQ6XZF7 1577 aa23.29■■□□□ 1.32
LINC00554-201ENST00000564841 ARAP1Q96P48 1450 aa23.28■■□□□ 1.32
LINC00554-201ENST00000564841 PRKCSHP14314 528 aaPredicted RBP23.27■■□□□ 1.32
LINC00554-201ENST00000564841 LAMC3Q9Y6N6 1575 aa23.27■■□□□ 1.32
LINC00554-201ENST00000564841 DHX57Q6P158 1386 aaKnown RBP23.27■■□□□ 1.32
LINC00554-201ENST00000564841 TRIM52Q96A61 297 aa23.19■■□□□ 1.3
LINC00554-201ENST00000564841 KIF21AQ7Z4S6 1674 aa23.19■■□□□ 1.3
LINC00554-201ENST00000564841 ARHGAP35Q9NRY4 1499 aa23.19■■□□□ 1.3
LINC00554-201ENST00000564841 ABCA10Q8WWZ4 1543 aa23.15■■□□□ 1.3
LINC00554-201ENST00000564841 DDX10Q13206 875 aaKnown RBP23.15■■□□□ 1.3
LINC00554-201ENST00000564841 NEFLP07196 543 aa23.12■■□□□ 1.29
LINC00554-201ENST00000564841 AQRO60306 1485 aaKnown RBP eCLIP23.07■■□□□ 1.28
LINC00554-201ENST00000564841 HIRIP3Q9BW71 556 aaPredicted RBP23.07■■□□□ 1.28
LINC00554-201ENST00000564841 GAPVD1Q14C86 1478 aa23.07■■□□□ 1.28
LINC00554-201ENST00000564841 FHOD3Q2V2M9 1422 aa23.06■■□□□ 1.28
LINC00554-201ENST00000564841 IRX6P78412 446 aaPredicted RBP23.05■■□□□ 1.28
LINC00554-201ENST00000564841 ARID3CA6NKF2 412 aa23.03■■□□□ 1.28
LINC00554-201ENST00000564841 ERCC6Q03468 1493 aa23.02■■□□□ 1.27
LINC00554-201ENST00000564841 ERICH6Q7L0X2 663 aa23■■□□□ 1.27
LINC00554-201ENST00000564841 FBLN2P98095 1184 aa22.99■■□□□ 1.27
LINC00554-201ENST00000564841 FAM50AQ14320 339 aaKnown RBP22.94■■□□□ 1.26
LINC00554-201ENST00000564841 MRC2Q9UBG0 1479 aa22.93■■□□□ 1.26
LINC00554-201ENST00000564841 ZNF608Q9ULD9 1512 aaPredicted RBP22.91■■□□□ 1.26
LINC00554-201ENST00000564841 DEKP35659 375 aaKnown RBP22.9■■□□□ 1.26
LINC00554-201ENST00000564841 ANO8Q9HCE9 1232 aaPredicted RBP22.87■■□□□ 1.25
LINC00554-201ENST00000564841 SIN3AQ96ST3 1273 aa22.86■■□□□ 1.25
LINC00554-201ENST00000564841 FANCIQ9NVI1 1328 aa22.84■■□□□ 1.25
LINC00554-201ENST00000564841 ABCA5Q8WWZ7 1642 aa22.84■■□□□ 1.25
LINC00554-201ENST00000564841 CUL7Q14999 1698 aa22.84■■□□□ 1.25
LINC00554-201ENST00000564841 TARBP1Q13395 1621 aaKnown RBP22.83■■□□□ 1.25
LINC00554-201ENST00000564841 WDR97A6NE52 1622 aa22.83■■□□□ 1.24
LINC00554-201ENST00000564841 FHAD1B1AJZ9 1412 aa22.81■■□□□ 1.24
LINC00554-201ENST00000564841 PPP1R15AO75807 674 aaPredicted RBP22.81■■□□□ 1.24
LINC00554-201ENST00000564841 CDK11AQ9UQ88 783 aaPredicted RBP22.81■■□□□ 1.24
LINC00554-201ENST00000564841 CCNB3Q8WWL7 1395 aa22.8■■□□□ 1.24
LINC00554-201ENST00000564841 PCF11O94913 1555 aaKnown RBP22.79■■□□□ 1.24
LINC00554-201ENST00000564841 NBR1Q14596 966 aa22.78■■□□□ 1.24
LINC00554-201ENST00000564841 CHMP7Q8WUX9 453 aaPredicted RBP22.75■■□□□ 1.23
LINC00554-201ENST00000564841 PHLDB1Q86UU1 1377 aa22.75■■□□□ 1.23
LINC00554-201ENST00000564841 TIAM1Q13009 1591 aa22.74■■□□□ 1.23
LINC00554-201ENST00000564841 RAB3GAP2Q9H2M9 1393 aa22.73■■□□□ 1.23
LINC00554-201ENST00000564841 ANP32CO43423 234 aa22.73■■□□□ 1.23
LINC00554-201ENST00000564841 LRRC9Q6ZRR7 1453 aa22.73■■□□□ 1.23
LINC00554-201ENST00000564841 CTTNBP2Q8WZ74 1663 aa22.72■■□□□ 1.23
LINC00554-201ENST00000564841 GRIN2BQ13224 1484 aa22.71■■□□□ 1.23
LINC00554-201ENST00000564841 MTUS2Q5JR59 1369 aa22.7■■□□□ 1.22
LINC00554-201ENST00000564841 IFT140Q96RY7 1462 aa22.68■■□□□ 1.22
LINC00554-201ENST00000564841 HNRNPUQ00839 825 aaKnown RBP eCLIP22.68■■□□□ 1.22
LINC00554-201ENST00000564841 FMN1Q68DA7 1419 aa22.67■■□□□ 1.22
LINC00554-201ENST00000564841 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
LINC00554-201ENST00000564841 RRBP1Q9P2E9 1410 aaKnown RBP22.66■■□□□ 1.22
LINC00554-201ENST00000564841 PBRM1Q86U86 1689 aa22.66■■□□□ 1.22
LINC00554-201ENST00000564841 MAPKBP1O60336 1514 aa22.65■■□□□ 1.22
LINC00554-201ENST00000564841 CASKIN1Q8WXD9 1431 aa22.64■■□□□ 1.22
LINC00554-201ENST00000564841 SALL2Q9Y467 1007 aaPredicted RBP22.64■■□□□ 1.22
LINC00554-201ENST00000564841 PAK3O75914 559 aaPredicted RBP22.64■■□□□ 1.21
LINC00554-201ENST00000564841 EFCAB5A4FU69 1503 aa22.64■■□□□ 1.21
LINC00554-201ENST00000564841 WDR62O43379 1518 aa22.64■■□□□ 1.21
LINC00554-201ENST00000564841 CCER2I3L3R5 266 aa22.63■■□□□ 1.21
LINC00554-201ENST00000564841 CCDC136Q96JN2 1154 aa22.61■■□□□ 1.21
LINC00554-201ENST00000564841 B4GALNT3Q6L9W6 998 aa22.6■■□□□ 1.21
LINC00554-201ENST00000564841 FYCO1Q9BQS8 1478 aa22.6■■□□□ 1.21
LINC00554-201ENST00000564841 ADAMTS12P58397 1594 aa22.58■■□□□ 1.2
LINC00554-201ENST00000564841 RTN4Q9NQC3 1192 aaKnown RBP22.55■■□□□ 1.2
LINC00554-201ENST00000564841 EIF4G3O43432 1585 aaKnown RBP22.55■■□□□ 1.2
LINC00554-201ENST00000564841 CHIC2Q9UKJ5 165 aa22.54■■□□□ 1.2
LINC00554-201ENST00000564841 IQGAP2Q13576 1575 aa22.53■■□□□ 1.2
LINC00554-201ENST00000564841 NOP58Q9Y2X3 529 aaKnown RBP22.5■■□□□ 1.19
LINC00554-201ENST00000564841 MAP3K1Q13233 1512 aa22.49■■□□□ 1.19
LINC00554-201ENST00000564841 SETD5Q9C0A6 1442 aa22.49■■□□□ 1.19
LINC00554-201ENST00000564841 IL27Q8NEV9 243 aa22.49■■□□□ 1.19
LINC00554-201ENST00000564841 SAMD9Q5K651 1589 aa22.49■■□□□ 1.19
LINC00554-201ENST00000564841 THOC2Q8NI27 1593 aaKnown RBP22.49■■□□□ 1.19
LINC00554-201ENST00000564841 MYT1LQ9UL68 1186 aa22.47■■□□□ 1.19
LINC00554-201ENST00000564841 GRIN2AQ12879 1464 aa22.47■■□□□ 1.19
LINC00554-201ENST00000564841 CFAP43Q8NDM7 1665 aa22.47■■□□□ 1.19
LINC00554-201ENST00000564841 CDK13Q14004 1512 aaKnown RBP22.45■■□□□ 1.19
LINC00554-201ENST00000564841 PPP4R2Q9NY27 417 aa22.45■■□□□ 1.18
LINC00554-201ENST00000564841 JPH4Q96JJ6 628 aa22.45■■□□□ 1.18
LINC00554-201ENST00000564841 CCDC184Q52MB2 194 aa22.44■■□□□ 1.18
LINC00554-201ENST00000564841 RRP7BPQ9NSQ0 103 aa22.43■■□□□ 1.18
LINC00554-201ENST00000564841 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.43■■□□□ 1.18
LINC00554-201ENST00000564841 NCOA2Q15596 1464 aa22.41■■□□□ 1.18
LINC00554-201ENST00000564841 FGD6Q6ZV73 1430 aa22.4■■□□□ 1.18
LINC00554-201ENST00000564841 KIAA0586Q9BVV6 1533 aa22.4■■□□□ 1.18
LINC00554-201ENST00000564841 LRRIQ1Q96JM4 1722 aa22.4■■□□□ 1.18
LINC00554-201ENST00000564841 ZNF777Q9ULD5 760 aaPredicted RBP22.36■■□□□ 1.17
LINC00554-201ENST00000564841 MAGI3Q5TCQ9 1506 aa22.36■■□□□ 1.17
LINC00554-201ENST00000564841 SYNJ2O15056 1496 aa22.35■■□□□ 1.17
LINC00554-201ENST00000564841 EPRSP07814 1512 aaKnown RBP22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms