RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 FKBP8Q14318 412 aa14.55□□□□□ -0.08
RNF40-204ENST00000563683 RRP7BPQ9NSQ0 103 aa14.55□□□□□ -0.08
RNF40-204ENST00000563683 RBM19Q9Y4C8 960 aaKnown RBP14.51□□□□□ -0.09
RNF40-204ENST00000563683 CDK11AQ9UQ88 783 aaPredicted RBP14.49□□□□□ -0.09
RNF40-204ENST00000563683 HNRNPUQ00839 825 aaKnown RBP eCLIP14.45□□□□□ -0.1
RNF40-204ENST00000563683 RRBP1Q9P2E9 1410 aaKnown RBP14.44□□□□□ -0.1
RNF40-204ENST00000563683 CADPSQ9ULU8 1353 aa14.43□□□□□ -0.1
RNF40-204ENST00000563683 SYNJ1O43426 1573 aa14.43□□□□□ -0.1
RNF40-204ENST00000563683 KCNH8Q96L42 1107 aa14.42□□□□□ -0.1
RNF40-204ENST00000563683 TDRD9Q8NDG6 1382 aaKnown RBP14.41□□□□□ -0.1
RNF40-204ENST00000563683 RAB3GAP2Q9H2M9 1393 aa14.41□□□□□ -0.1
RNF40-204ENST00000563683 FHAD1B1AJZ9 1412 aa14.41□□□□□ -0.1
RNF40-204ENST00000563683 FAM9BQ8IZU0 186 aa14.41□□□□□ -0.1
RNF40-204ENST00000563683 CCER2I3L3R5 266 aa14.39□□□□□ -0.11
RNF40-204ENST00000563683 CHMP7Q8WUX9 453 aaPredicted RBP14.39□□□□□ -0.11
RNF40-204ENST00000563683 SETD5Q9C0A6 1442 aa14.37□□□□□ -0.11
RNF40-204ENST00000563683 SLC4A1APQ9BWU0 796 aaKnown RBP14.36□□□□□ -0.11
RNF40-204ENST00000563683 ERICH3Q5RHP9 1530 aa14.35□□□□□ -0.11
RNF40-204ENST00000563683 FHOD3Q2V2M9 1422 aa14.34□□□□□ -0.11
RNF40-204ENST00000563683 IGF1RP08069 1367 aa14.34□□□□□ -0.11
RNF40-204ENST00000563683 FANCIQ9NVI1 1328 aa14.34□□□□□ -0.11
RNF40-204ENST00000563683 ARAP1Q96P48 1450 aa14.34□□□□□ -0.11
RNF40-204ENST00000563683 IRX6P78412 446 aaPredicted RBP14.33□□□□□ -0.11
RNF40-204ENST00000563683 TIMELESSQ9UNS1 1208 aa14.33□□□□□ -0.11
RNF40-204ENST00000563683 EIF4G2P78344 907 aaKnown RBP eCLIP14.33□□□□□ -0.12
RNF40-204ENST00000563683 BICRAQ9NZM4 1560 aa14.32□□□□□ -0.12
RNF40-204ENST00000563683 KDM2AQ9Y2K7 1162 aa14.32□□□□□ -0.12
RNF40-204ENST00000563683 NCAPD3P42695 1498 aa14.31□□□□□ -0.12
RNF40-204ENST00000563683 PPP1R15AO75807 674 aaPredicted RBP14.3□□□□□ -0.12
RNF40-204ENST00000563683 MRS2Q9HD23 443 aa14.29□□□□□ -0.12
RNF40-204ENST00000563683 PEG3Q9GZU2 1588 aa14.29□□□□□ -0.12
RNF40-204ENST00000563683 SENP3-EIF4A1A0A087X0R7 540 aa14.28□□□□□ -0.12
RNF40-204ENST00000563683 ARHGAP35Q9NRY4 1499 aa14.28□□□□□ -0.12
RNF40-204ENST00000563683 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.28□□□□□ -0.126e-7■■□□□ 13.6
RNF40-204ENST00000563683 PRXQ9BXM0 1461 aa14.27□□□□□ -0.12
RNF40-204ENST00000563683 TSPY4P0CV99 314 aa14.27□□□□□ -0.12
RNF40-204ENST00000563683 TSPY10P0CW01 314 aa14.27□□□□□ -0.12
RNF40-204ENST00000563683 FOXD1Q16676 465 aa14.27□□□□□ -0.12
RNF40-204ENST00000563683 MSH5O43196 834 aa14.26□□□□□ -0.13
RNF40-204ENST00000563683 CFDP1Q9UEE9 299 aaPredicted RBP14.26□□□□□ -0.13
RNF40-204ENST00000563683 MAPKBP1O60336 1514 aa14.26□□□□□ -0.13
RNF40-204ENST00000563683 SALL2Q9Y467 1007 aaPredicted RBP14.26□□□□□ -0.13
RNF40-204ENST00000563683 FANCD2Q9BXW9 1451 aa14.25□□□□□ -0.13
RNF40-204ENST00000563683 TOP2BQ02880 1626 aa14.25□□□□□ -0.13
RNF40-204ENST00000563683 FGD5Q6ZNL6 1462 aa14.25□□□□□ -0.13
RNF40-204ENST00000563683 RAD54L2Q9Y4B4 1467 aa14.23□□□□□ -0.13
RNF40-204ENST00000563683 ERICH6BQ5W0A0 696 aa14.23□□□□□ -0.13
RNF40-204ENST00000563683 WDR97A6NE52 1622 aa14.22□□□□□ -0.13
RNF40-204ENST00000563683 PLEKHD1A6NEE1 506 aa14.22□□□□□ -0.13
RNF40-204ENST00000563683 FMN1Q68DA7 1419 aa14.21□□□□□ -0.14
RNF40-204ENST00000563683 CFTRP13569 1480 aa14.2□□□□□ -0.14
RNF40-204ENST00000563683 UNC13AQ9UPW8 1703 aa14.19□□□□□ -0.14
RNF40-204ENST00000563683 CUX1P39880 1505 aa14.19□□□□□ -0.14
RNF40-204ENST00000563683 TMC1Q8TDI8 760 aa14.19□□□□□ -0.14
RNF40-204ENST00000563683 PDS5BQ9NTI5 1447 aa14.19□□□□□ -0.14
RNF40-204ENST00000563683 PHLDB1Q86UU1 1377 aa14.18□□□□□ -0.14
RNF40-204ENST00000563683 RGL3Q3MIN7 710 aa14.17□□□□□ -0.14
RNF40-204ENST00000563683 BIVM-ERCC5R4GMW8 1640 aa14.16□□□□□ -0.14
RNF40-204ENST00000563683 HSPA5P11021 654 aaKnown RBP14.15□□□□□ -0.14
RNF40-204ENST00000563683 MAP3K1Q13233 1512 aa14.15□□□□□ -0.14
RNF40-204ENST00000563683 MPHOSPH9Q99550 1183 aa14.14□□□□□ -0.15
RNF40-204ENST00000563683 PPP4R2Q9NY27 417 aa14.13□□□□□ -0.15
RNF40-204ENST00000563683 DEKP35659 375 aaKnown RBP14.11□□□□□ -0.15
RNF40-204ENST00000563683 DAXXQ9UER7 740 aaPredicted RBP14.11□□□□□ -0.15
RNF40-204ENST00000563683 LRRC9Q6ZRR7 1453 aa14.1□□□□□ -0.15
RNF40-204ENST00000563683 TIAM1Q13009 1591 aa14.1□□□□□ -0.15
RNF40-204ENST00000563683 L3MBTL2Q969R5 705 aa14.1□□□□□ -0.15
RNF40-204ENST00000563683 NESP48681 1621 aa14.09□□□□□ -0.15
RNF40-204ENST00000563683 ERCC6Q03468 1493 aa14.09□□□□□ -0.15
RNF40-204ENST00000563683 CARD11Q9BXL7 1154 aa14.08□□□□□ -0.16
RNF40-204ENST00000563683 CHGAP10645 457 aaKnown RBP14.07□□□□□ -0.16
RNF40-204ENST00000563683 HMGXB3Q12766 1538 aa14.06□□□□□ -0.16
RNF40-204ENST00000563683 CCDC136Q96JN2 1154 aa14.05□□□□□ -0.16
RNF40-204ENST00000563683 PKD2Q13563 968 aa14.05□□□□□ -0.16
RNF40-204ENST00000563683 GAPVD1Q14C86 1478 aa14.03□□□□□ -0.16
RNF40-204ENST00000563683 NOP58Q9Y2X3 529 aaKnown RBP14.03□□□□□ -0.16
RNF40-204ENST00000563683 DCAF11Q8TEB1 546 aa14.03□□□□□ -0.16
RNF40-204ENST00000563683 DNAJC5BQ9UF47 199 aa14.03□□□□□ -0.16
RNF40-204ENST00000563683 NPM2Q86SE8 214 aaKnown RBP14.02□□□□□ -0.16
RNF40-204ENST00000563683 FGD6Q6ZV73 1430 aa14.01□□□□□ -0.17
RNF40-204ENST00000563683 RTL5Q5HYW3 569 aaPredicted RBP14.01□□□□□ -0.17
RNF40-204ENST00000563683 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.01□□□□□ -0.17
RNF40-204ENST00000563683 CCDC18Q5T9S5 1454 aa14.01□□□□□ -0.17
RNF40-204ENST00000563683 PRKCSHP14314 528 aaPredicted RBP14□□□□□ -0.17
RNF40-204ENST00000563683 ZNF644Q9H582 1327 aaPredicted RBP13.99□□□□□ -0.17
RNF40-204ENST00000563683 AQRO60306 1485 aaKnown RBP eCLIP13.97□□□□□ -0.172e-7■■■■□ 25.2
RNF40-204ENST00000563683 B4GALNT3Q6L9W6 998 aa13.97□□□□□ -0.17
RNF40-204ENST00000563683 POLA1P09884 1462 aaPredicted RBP13.97□□□□□ -0.17
RNF40-204ENST00000563683 JPH4Q96JJ6 628 aa13.97□□□□□ -0.17
RNF40-204ENST00000563683 SENP3Q9H4L4 574 aaPredicted RBP13.96□□□□□ -0.17
RNF40-204ENST00000563683 CASKIN1Q8WXD9 1431 aa13.96□□□□□ -0.17
RNF40-204ENST00000563683 CC2D2AQ9P2K1 1620 aa13.96□□□□□ -0.17
RNF40-204ENST00000563683 ANP32AP39687 249 aaKnown RBP13.96□□□□□ -0.18
RNF40-204ENST00000563683 NPM1P06748 294 aaKnown RBP eCLIP13.95□□□□□ -0.18
RNF40-204ENST00000563683 TOPBP1Q92547 1522 aa13.95□□□□□ -0.18
RNF40-204ENST00000563683 NBR1Q14596 966 aa13.95□□□□□ -0.18
RNF40-204ENST00000563683 HNRNPMP52272 730 aaKnown RBP eCLIP13.94□□□□□ -0.18
RNF40-204ENST00000563683 NUP155O75694 1391 aa13.94□□□□□ -0.18
RNF40-204ENST00000563683 MYOM3Q5VTT5 1437 aa13.93□□□□□ -0.18
RNF40-204ENST00000563683 CANXP27824 592 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms