RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 BCANQ96GW7 911 aa19.9■□□□□ 0.78
VPS9D1-202ENST00000561976 ATP1B4Q9UN42 357 aaPredicted RBP19.89■□□□□ 0.77
VPS9D1-202ENST00000561976 MAP3K1Q13233 1512 aa19.89■□□□□ 0.77
VPS9D1-202ENST00000561976 LRRC9Q6ZRR7 1453 aa19.88■□□□□ 0.77
VPS9D1-202ENST00000561976 CARMIL1Q5VZK9 1371 aa19.88■□□□□ 0.77
VPS9D1-202ENST00000561976 PHLDB1Q86UU1 1377 aa19.88■□□□□ 0.77
VPS9D1-202ENST00000561976 WDR97A6NE52 1622 aa19.86■□□□□ 0.77
VPS9D1-202ENST00000561976 FKBP8Q14318 412 aa19.85■□□□□ 0.77
VPS9D1-202ENST00000561976 P3H3Q8IVL6 736 aa19.85■□□□□ 0.77
VPS9D1-202ENST00000561976 HIRIP3Q9BW71 556 aaPredicted RBP19.81■□□□□ 0.76
VPS9D1-202ENST00000561976 FHAD1B1AJZ9 1412 aa19.81■□□□□ 0.76
VPS9D1-202ENST00000561976 PPP1R15AO75807 674 aaPredicted RBP19.78■□□□□ 0.76
VPS9D1-202ENST00000561976 TIMELESSQ9UNS1 1208 aa19.78■□□□□ 0.76
VPS9D1-202ENST00000561976 NEFLP07196 543 aa19.78■□□□□ 0.76
VPS9D1-202ENST00000561976 ANP32EQ9BTT0 268 aa19.77■□□□□ 0.76
VPS9D1-202ENST00000561976 FGD5Q6ZNL6 1462 aa19.76■□□□□ 0.75
VPS9D1-202ENST00000561976 ANP32CO43423 234 aa19.76■□□□□ 0.75
VPS9D1-202ENST00000561976 PCF11O94913 1555 aaKnown RBP19.73■□□□□ 0.75
VPS9D1-202ENST00000561976 TRIM52Q96A61 297 aa19.73■□□□□ 0.75
VPS9D1-202ENST00000561976 PRDM2Q13029 1718 aa19.72■□□□□ 0.75
VPS9D1-202ENST00000561976 CFAP43Q8NDM7 1665 aa19.71■□□□□ 0.75
VPS9D1-202ENST00000561976 CADPSQ9ULU8 1353 aa19.71■□□□□ 0.75
VPS9D1-202ENST00000561976 CCER2I3L3R5 266 aa19.71■□□□□ 0.75
VPS9D1-202ENST00000561976 FHOD3Q2V2M9 1422 aa19.69■□□□□ 0.74
VPS9D1-202ENST00000561976 TONSLQ96HA7 1378 aa19.67■□□□□ 0.74
VPS9D1-202ENST00000561976 FYCO1Q9BQS8 1478 aa19.62■□□□□ 0.73
VPS9D1-202ENST00000561976 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.61■□□□□ 0.73
VPS9D1-202ENST00000561976 CASKIN1Q8WXD9 1431 aa19.6■□□□□ 0.73
VPS9D1-202ENST00000561976 RBM19Q9Y4C8 960 aaKnown RBP19.58■□□□□ 0.73
VPS9D1-202ENST00000561976 FGD6Q6ZV73 1430 aa19.57■□□□□ 0.72
VPS9D1-202ENST00000561976 CCDC18Q5T9S5 1454 aa19.56■□□□□ 0.72
VPS9D1-202ENST00000561976 EFCAB5A4FU69 1503 aa19.56■□□□□ 0.72
VPS9D1-202ENST00000561976 MTUS2Q5JR59 1369 aa19.55■□□□□ 0.72
VPS9D1-202ENST00000561976 AQRO60306 1485 aaKnown RBP eCLIP19.54■□□□□ 0.72
VPS9D1-202ENST00000561976 RAD54L2Q9Y4B4 1467 aa19.54■□□□□ 0.72
VPS9D1-202ENST00000561976 FANCD2Q9BXW9 1451 aa19.53■□□□□ 0.72
VPS9D1-202ENST00000561976 CC2D2AQ9P2K1 1620 aa19.53■□□□□ 0.72
VPS9D1-202ENST00000561976 FMN1Q68DA7 1419 aa19.51■□□□□ 0.71
VPS9D1-202ENST00000561976 UACAQ9BZF9 1416 aa19.51■□□□□ 0.71
VPS9D1-202ENST00000561976 HFM1A2PYH4 1435 aa19.49■□□□□ 0.71
VPS9D1-202ENST00000561976 HNRNPUQ00839 825 aaKnown RBP eCLIP19.49■□□□□ 0.71
VPS9D1-202ENST00000561976 PTPRKQ15262 1439 aa19.48■□□□□ 0.71
VPS9D1-202ENST00000561976 ABCA10Q8WWZ4 1543 aa19.48■□□□□ 0.71
VPS9D1-202ENST00000561976 PTPN23Q9H3S7 1636 aa19.46■□□□□ 0.71
VPS9D1-202ENST00000561976 POLA1P09884 1462 aaPredicted RBP19.45■□□□□ 0.7
VPS9D1-202ENST00000561976 DNMBPQ6XZF7 1577 aa19.45■□□□□ 0.7
VPS9D1-202ENST00000561976 CTTNBP2Q8WZ74 1663 aa19.44■□□□□ 0.7
VPS9D1-202ENST00000561976 NAIPQ13075 1403 aa19.43■□□□□ 0.7
VPS9D1-202ENST00000561976 CUL7Q14999 1698 aa19.43■□□□□ 0.7
VPS9D1-202ENST00000561976 SNAPC4Q5SXM2 1469 aa19.43■□□□□ 0.7
VPS9D1-202ENST00000561976 TOPBP1Q92547 1522 aa19.42■□□□□ 0.7
VPS9D1-202ENST00000561976 IRX6P78412 446 aaPredicted RBP19.42■□□□□ 0.7
VPS9D1-202ENST00000561976 MYOM3Q5VTT5 1437 aa19.41■□□□□ 0.7
VPS9D1-202ENST00000561976 NCOA2Q15596 1464 aa19.41■□□□□ 0.7
VPS9D1-202ENST00000561976 RRP7BPQ9NSQ0 103 aa19.38■□□□□ 0.69
VPS9D1-202ENST00000561976 HSPA5P11021 654 aaKnown RBP19.38■□□□□ 0.69
VPS9D1-202ENST00000561976 CHIC2Q9UKJ5 165 aa19.37■□□□□ 0.69
VPS9D1-202ENST00000561976 CDK11AQ9UQ88 783 aaPredicted RBP19.37■□□□□ 0.69
VPS9D1-202ENST00000561976 WASHC2AQ641Q2 1341 aa19.36■□□□□ 0.69
VPS9D1-202ENST00000561976 KDM5BQ9UGL1 1544 aa19.33■□□□□ 0.68
VPS9D1-202ENST00000561976 EIF4G2P78344 907 aaKnown RBP eCLIP19.33■□□□□ 0.68
VPS9D1-202ENST00000561976 SUPT6HQ7KZ85 1726 aaKnown RBP19.33■□□□□ 0.68
VPS9D1-202ENST00000561976 BCL11AQ9H165 835 aa19.31■□□□□ 0.68
VPS9D1-202ENST00000561976 GRIN2BQ13224 1484 aa19.31■□□□□ 0.68
VPS9D1-202ENST00000561976 NESP48681 1621 aa19.31■□□□□ 0.68
VPS9D1-202ENST00000561976 TDRD9Q8NDG6 1382 aaKnown RBP19.31■□□□□ 0.68
VPS9D1-202ENST00000561976 LRRIQ1Q96JM4 1722 aa19.3■□□□□ 0.68
VPS9D1-202ENST00000561976 EHBP1L1Q8N3D4 1523 aa19.3■□□□□ 0.68
VPS9D1-202ENST00000561976 MSH5O43196 834 aa19.3■□□□□ 0.68
VPS9D1-202ENST00000561976 SAMD9Q5K651 1589 aa19.29■□□□□ 0.68
VPS9D1-202ENST00000561976 ERICH6Q7L0X2 663 aa19.27■□□□□ 0.67
VPS9D1-202ENST00000561976 UGGT2Q9NYU1 1516 aa19.25■□□□□ 0.67
VPS9D1-202ENST00000561976 THOC2Q8NI27 1593 aaKnown RBP19.25■□□□□ 0.67
VPS9D1-202ENST00000561976 CCDC184Q52MB2 194 aa19.25■□□□□ 0.67
VPS9D1-202ENST00000561976 FAM9BQ8IZU0 186 aa19.25■□□□□ 0.67
VPS9D1-202ENST00000561976 FANCIQ9NVI1 1328 aa19.25■□□□□ 0.67
VPS9D1-202ENST00000561976 CNTLNQ9NXG0 1405 aa19.24■□□□□ 0.67
VPS9D1-202ENST00000561976 MPHOSPH9Q99550 1183 aa19.23■□□□□ 0.67
VPS9D1-202ENST00000561976 ERICH6BQ5W0A0 696 aa19.23■□□□□ 0.67
VPS9D1-202ENST00000561976 L3MBTL2Q969R5 705 aa19.23■□□□□ 0.67
VPS9D1-202ENST00000561976 PPP4R2Q9NY27 417 aa19.23■□□□□ 0.67
VPS9D1-202ENST00000561976 GAPVD1Q14C86 1478 aa19.23■□□□□ 0.67
VPS9D1-202ENST00000561976 FOXD1Q16676 465 aa19.21■□□□□ 0.67
VPS9D1-202ENST00000561976 MRS2Q9HD23 443 aa19.21■□□□□ 0.67
VPS9D1-202ENST00000561976 DNAJC5BQ9UF47 199 aa19.21■□□□□ 0.67
VPS9D1-202ENST00000561976 URB2Q14146 1524 aaKnown RBP19.2■□□□□ 0.66
VPS9D1-202ENST00000561976 MAGI3Q5TCQ9 1506 aa19.2■□□□□ 0.66
VPS9D1-202ENST00000561976 DENND4BO75064 1496 aaPredicted RBP19.2■□□□□ 0.66
VPS9D1-202ENST00000561976 PRKRIP1Q9H875 184 aaPredicted RBP19.2■□□□□ 0.66
VPS9D1-202ENST00000561976 HECW1Q76N89 1606 aa19.2■□□□□ 0.66
VPS9D1-202ENST00000561976 ARHGEF11O15085 1522 aa19.19■□□□□ 0.66
VPS9D1-202ENST00000561976 C11orf95C9JLR9 678 aaPredicted RBP19.19■□□□□ 0.66
VPS9D1-202ENST00000561976 GCC2Q8IWJ2 1684 aa19.18■□□□□ 0.66
VPS9D1-202ENST00000561976 TCOF1Q13428 1488 aaKnown RBP19.18■□□□□ 0.66
VPS9D1-202ENST00000561976 CCDC7Q96M83 1385 aa19.18■□□□□ 0.66
VPS9D1-202ENST00000561976 ABCA5Q8WWZ7 1642 aa19.17■□□□□ 0.66
VPS9D1-202ENST00000561976 ARID3CA6NKF2 412 aa19.17■□□□□ 0.66
VPS9D1-202ENST00000561976 KDM6BO15054 1643 aa19.17■□□□□ 0.66
VPS9D1-202ENST00000561976 AKNAQ7Z591 1439 aa19.15■□□□□ 0.66
VPS9D1-202ENST00000561976 NCOA1Q15788 1441 aa19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms