RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 EIF4G3O43432 1585 aaKnown RBP27.06■■□□□ 1.92
RAB40C-206ENST00000561781 GAPVD1Q14C86 1478 aa26.96■■□□□ 1.91
RAB40C-206ENST00000561781 ABCA5Q8WWZ7 1642 aa26.94■■□□□ 1.9
RAB40C-206ENST00000561781 KIF27Q86VH2 1401 aa26.89■■□□□ 1.9
RAB40C-206ENST00000561781 RBM19Q9Y4C8 960 aaKnown RBP26.86■■□□□ 1.89
RAB40C-206ENST00000561781 MYT1LQ9UL68 1186 aa26.86■■□□□ 1.89
RAB40C-206ENST00000561781 SNAPC4Q5SXM2 1469 aa26.86■■□□□ 1.89
RAB40C-206ENST00000561781 PBRM1Q86U86 1689 aa26.84■■□□□ 1.89
RAB40C-206ENST00000561781 GRIN2BQ13224 1484 aa26.83■■□□□ 1.89
RAB40C-206ENST00000561781 FBLN2P98095 1184 aa26.82■■□□□ 1.88
RAB40C-206ENST00000561781 CEP162Q5TB80 1403 aa26.82■■□□□ 1.88
RAB40C-206ENST00000561781 IGF1RP08069 1367 aa26.79■■□□□ 1.88
RAB40C-206ENST00000561781 ERICH3Q5RHP9 1530 aa26.71■■□□□ 1.87
RAB40C-206ENST00000561781 ADAMTS12P58397 1594 aa26.67■■□□□ 1.86
RAB40C-206ENST00000561781 CHMP7Q8WUX9 453 aaPredicted RBP26.66■■□□□ 1.86
RAB40C-206ENST00000561781 MAGI1Q96QZ7 1491 aaPredicted RBP26.66■■□□□ 1.86
RAB40C-206ENST00000561781 HNRNPUL2Q1KMD3 747 aaKnown RBP26.66■■□□□ 1.86
RAB40C-206ENST00000561781 ANO8Q9HCE9 1232 aaPredicted RBP26.64■■□□□ 1.86
RAB40C-206ENST00000561781 CARMIL1Q5VZK9 1371 aa26.64■■□□□ 1.85
RAB40C-206ENST00000561781 MSH5O43196 834 aa26.64■■□□□ 1.85
RAB40C-206ENST00000561781 CHD1O14646 1710 aa26.62■■□□□ 1.85
RAB40C-206ENST00000561781 SYNJ2O15056 1496 aa26.61■■□□□ 1.85
RAB40C-206ENST00000561781 FHAD1B1AJZ9 1412 aa26.6■■□□□ 1.85
RAB40C-206ENST00000561781 TNIKQ9UKE5 1360 aa26.59■■□□□ 1.85
RAB40C-206ENST00000561781 BCANQ96GW7 911 aa26.56■■□□□ 1.84
RAB40C-206ENST00000561781 FANCIQ9NVI1 1328 aa26.56■■□□□ 1.84
RAB40C-206ENST00000561781 EEA1Q15075 1411 aa26.56■■□□□ 1.84
RAB40C-206ENST00000561781 GRIN2AQ12879 1464 aa26.54■■□□□ 1.84
RAB40C-206ENST00000561781 CUL7Q14999 1698 aa26.54■■□□□ 1.84
RAB40C-206ENST00000561781 RAPGEF2Q9Y4G8 1499 aa26.54■■□□□ 1.84
RAB40C-206ENST00000561781 PRXQ9BXM0 1461 aa26.52■■□□□ 1.84
RAB40C-206ENST00000561781 ERICH6BQ5W0A0 696 aa26.52■■□□□ 1.84
RAB40C-206ENST00000561781 FKBP8Q14318 412 aa26.5■■□□□ 1.83
RAB40C-206ENST00000561781 DEKP35659 375 aaKnown RBP26.5■■□□□ 1.83
RAB40C-206ENST00000561781 CEP170Q5SW79 1584 aa26.45■■□□□ 1.82
RAB40C-206ENST00000561781 OSCARQ8IYS5 282 aa26.43■■□□□ 1.82
RAB40C-206ENST00000561781 RANGAP1P46060 587 aaPredicted RBP26.4■■□□□ 1.82
RAB40C-206ENST00000561781 UBE2Q2Q8WVN8 375 aa26.4■■□□□ 1.82
RAB40C-206ENST00000561781 NEFLP07196 543 aa26.38■■□□□ 1.81
RAB40C-206ENST00000561781 UBTFP17480 764 aaKnown RBP26.38■■□□□ 1.81
RAB40C-206ENST00000561781 NUP160Q12769 1436 aa26.35■■□□□ 1.81
RAB40C-206ENST00000561781 KIF21BO75037 1637 aa26.34■■□□□ 1.81
RAB40C-206ENST00000561781 KCNH8Q96L42 1107 aa26.31■■□□□ 1.8
RAB40C-206ENST00000561781 SALL2Q9Y467 1007 aaPredicted RBP26.3■■□□□ 1.8
RAB40C-206ENST00000561781 GOLGA3Q08378 1498 aa26.3■■□□□ 1.8
RAB40C-206ENST00000561781 CLASP1Q7Z460 1538 aa26.27■■□□□ 1.8
RAB40C-206ENST00000561781 DHX57Q6P158 1386 aaKnown RBP26.22■■□□□ 1.79
RAB40C-206ENST00000561781 KIAA0586Q9BVV6 1533 aa26.2■■□□□ 1.79
RAB40C-206ENST00000561781 ERCC6L2Q5T890 1561 aa26.18■■□□□ 1.78
RAB40C-206ENST00000561781 JPH4Q96JJ6 628 aa26.18■■□□□ 1.78
RAB40C-206ENST00000561781 IQGAP2Q13576 1575 aa26.18■■□□□ 1.78
RAB40C-206ENST00000561781 CTTNBP2Q8WZ74 1663 aa26.17■■□□□ 1.78
RAB40C-206ENST00000561781 ITGAEP38570 1179 aa26.17■■□□□ 1.78
RAB40C-206ENST00000561781 P3H3Q8IVL6 736 aa26.14■■□□□ 1.77
RAB40C-206ENST00000561781 CDK11AQ9UQ88 783 aaPredicted RBP26.12■■□□□ 1.77
RAB40C-206ENST00000561781 PRG4Q92954 1404 aaPredicted RBP26.1■■□□□ 1.77
RAB40C-206ENST00000561781 DNAJC5Q9H3Z4 198 aa26.08■■□□□ 1.77
RAB40C-206ENST00000561781 ARHGEF11O15085 1522 aa26.05■■□□□ 1.76
RAB40C-206ENST00000561781 CCDC136Q96JN2 1154 aa26.05■■□□□ 1.76
RAB40C-206ENST00000561781 SHROOM2Q13796 1616 aa26.05■■□□□ 1.76
RAB40C-206ENST00000561781 CLIP1P30622 1438 aa26.04■■□□□ 1.76
RAB40C-206ENST00000561781 VPS8Q8N3P4 1428 aa26.04■■□□□ 1.76
RAB40C-206ENST00000561781 DISP1Q96F81 1524 aa26.02■■□□□ 1.76
RAB40C-206ENST00000561781 RIMBP3CA6NJZ7 1639 aa25.99■■□□□ 1.75
RAB40C-206ENST00000561781 RIMBP3BA6NNM3 1639 aa25.99■■□□□ 1.75
RAB40C-206ENST00000561781 RIMBP3Q9UFD9 1639 aa25.99■■□□□ 1.75
RAB40C-206ENST00000561781 UGGT2Q9NYU1 1516 aa25.98■■□□□ 1.75
RAB40C-206ENST00000561781 FHOD3Q2V2M9 1422 aa25.95■■□□□ 1.75
RAB40C-206ENST00000561781 KIAA0556O60303 1618 aa25.94■■□□□ 1.74
RAB40C-206ENST00000561781 CYB5RLQ6IPT4 315 aa25.92■■□□□ 1.74
RAB40C-206ENST00000561781 ARHGAP35Q9NRY4 1499 aa25.92■■□□□ 1.74
RAB40C-206ENST00000561781 ARAP1Q96P48 1450 aa25.91■■□□□ 1.74
RAB40C-206ENST00000561781 CARMIL2Q6F5E8 1435 aa25.88■■□□□ 1.73
RAB40C-206ENST00000561781 NOP58Q9Y2X3 529 aaKnown RBP25.88■■□□□ 1.73
RAB40C-206ENST00000561781 SAMD9Q5K651 1589 aa25.88■■□□□ 1.73
RAB40C-206ENST00000561781 TRIM52Q96A61 297 aa25.86■■□□□ 1.73
RAB40C-206ENST00000561781 NBR1Q14596 966 aa25.84■■□□□ 1.73
RAB40C-206ENST00000561781 DDX10Q13206 875 aaKnown RBP25.83■■□□□ 1.73
RAB40C-206ENST00000561781 ARID3CA6NKF2 412 aa25.83■■□□□ 1.72
RAB40C-206ENST00000561781 IL27Q8NEV9 243 aa25.81■■□□□ 1.72
RAB40C-206ENST00000561781 PTPRGP23470 1445 aa25.81■■□□□ 1.72
RAB40C-206ENST00000561781 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.8■■□□□ 1.72
RAB40C-206ENST00000561781 RTL5Q5HYW3 569 aaPredicted RBP25.79■■□□□ 1.72
RAB40C-206ENST00000561781 EFCAB5A4FU69 1503 aa25.78■■□□□ 1.72
RAB40C-206ENST00000561781 PLB1Q6P1J6 1458 aa25.77■■□□□ 1.72
RAB40C-206ENST00000561781 EIF5BO60841 1220 aaKnown RBP25.75■■□□□ 1.71
RAB40C-206ENST00000561781 CCER2I3L3R5 266 aa25.73■■□□□ 1.71
RAB40C-206ENST00000561781 ATP1B4Q9UN42 357 aaPredicted RBP25.72■■□□□ 1.71
RAB40C-206ENST00000561781 PPP1R15AO75807 674 aaPredicted RBP25.69■■□□□ 1.7
RAB40C-206ENST00000561781 RTN4Q9NQC3 1192 aaKnown RBP25.68■■□□□ 1.7
RAB40C-206ENST00000561781 PKNOX2Q96KN3 472 aa25.66■■□□□ 1.7
RAB40C-206ENST00000561781 ADCY10Q96PN6 1610 aa25.63■■□□□ 1.69
RAB40C-206ENST00000561781 PAK3O75914 559 aaPredicted RBP25.63■■□□□ 1.69
RAB40C-206ENST00000561781 RRBP1Q9P2E9 1410 aaKnown RBP25.62■■□□□ 1.69
RAB40C-206ENST00000561781 UACAQ9BZF9 1416 aa25.62■■□□□ 1.69
RAB40C-206ENST00000561781 IRX6P78412 446 aaPredicted RBP25.61■■□□□ 1.69
RAB40C-206ENST00000561781 MAPKBP1O60336 1514 aa25.61■■□□□ 1.69
RAB40C-206ENST00000561781 PCF11O94913 1555 aaKnown RBP25.6■■□□□ 1.69
RAB40C-206ENST00000561781 ANP32CO43423 234 aa25.59■■□□□ 1.69
RAB40C-206ENST00000561781 KANK4Q5T7N3 995 aaPredicted RBP25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms