RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 NISCHQ9Y2I1 1504 aa38.08■■■■□ 3.69
RAB40C-206ENST00000561781 CCDC180Q9P1Z9 1646 aa33.44■■■□□ 2.94
RAB40C-206ENST00000561781 ABCC9O60706 1549 aa32.67■■■□□ 2.82
RAB40C-206ENST00000561781 PELP1Q8IZL8 1130 aaKnown RBP32.01■■■□□ 2.71
RAB40C-206ENST00000561781 DCAF8L2P0C7V8 631 aa31.98■■■□□ 2.71
RAB40C-206ENST00000561781 ZCCHC6Q5VYS8 1495 aaKnown RBP31.83■■■□□ 2.69
RAB40C-206ENST00000561781 HRCP23327 699 aa31.55■■■□□ 2.64
RAB40C-206ENST00000561781 NACADO15069 1562 aa31.36■■■□□ 2.61
RAB40C-206ENST00000561781 RB1CC1Q8TDY2 1594 aa31.33■■■□□ 2.61
RAB40C-206ENST00000561781 DCAF1Q9Y4B6 1507 aa31.3■■■□□ 2.6
RAB40C-206ENST00000561781 MYO15BQ96JP2 1530 aa31.19■■■□□ 2.58
RAB40C-206ENST00000561781 MYT1Q01538 1121 aa31.15■■■□□ 2.58
RAB40C-206ENST00000561781 SCRIBQ14160 1630 aa30.91■■■□□ 2.54
RAB40C-206ENST00000561781 SHROOM4Q9ULL8 1493 aa30.82■■■□□ 2.52
RAB40C-206ENST00000561781 UNC13AQ9UPW8 1703 aa30.76■■■□□ 2.51
RAB40C-206ENST00000561781 PABPN1Q86U42 306 aaKnown RBP eCLIP30.72■■■□□ 2.51
RAB40C-206ENST00000561781 PPARGC1BQ86YN6 1023 aaKnown RBP30.54■■■□□ 2.48
RAB40C-206ENST00000561781 BICRAQ9NZM4 1560 aa30.51■■■□□ 2.47
RAB40C-206ENST00000561781 PCGF6Q9BYE7 350 aa30.38■■■□□ 2.45
RAB40C-206ENST00000561781 SCAF1Q9H7N4 1312 aaKnown RBP30.2■■■□□ 2.42
RAB40C-206ENST00000561781 SUPT5HO00267 1087 aaKnown RBP30.14■■■□□ 2.42
RAB40C-206ENST00000561781 CHIC1Q5VXU3 224 aa29.82■■■□□ 2.36
RAB40C-206ENST00000561781 CECR2Q9BXF3 1484 aa29.81■■■□□ 2.36
RAB40C-206ENST00000561781 EIF4G1Q04637 1599 aaKnown RBP29.65■■■□□ 2.34
RAB40C-206ENST00000561781 DNAJC5BQ9UF47 199 aa29.64■■■□□ 2.34
RAB40C-206ENST00000561781 TTBK1Q5TCY1 1321 aaPredicted RBP29.55■■■□□ 2.32
RAB40C-206ENST00000561781 ZEB1P37275 1124 aaPredicted RBP29.53■■■□□ 2.32
RAB40C-206ENST00000561781 MROH2BQ7Z745 1585 aa29.49■■■□□ 2.31
RAB40C-206ENST00000561781 SMARCA4P51532 1647 aa29.45■■■□□ 2.31
RAB40C-206ENST00000561781 CC2D2AQ9P2K1 1620 aa29.44■■■□□ 2.3
RAB40C-206ENST00000561781 BAZ1AQ9NRL2 1556 aaPredicted RBP29.42■■■□□ 2.3
RAB40C-206ENST00000561781 TRIM26Q12899 539 aaPredicted RBP29.35■■■□□ 2.29
RAB40C-206ENST00000561781 ACIN1Q9UKV3 1341 aaKnown RBP29.31■■■□□ 2.28
RAB40C-206ENST00000561781 RSF1Q96T23 1441 aaPredicted RBP29.28■■■□□ 2.28
RAB40C-206ENST00000561781 WIZO95785 1651 aa29.21■■■□□ 2.27
RAB40C-206ENST00000561781 ATAD2BQ9ULI0 1458 aa29.19■■■□□ 2.26
RAB40C-206ENST00000561781 LOC105371045A0A1W2PR82 267 aa29.15■■■□□ 2.26
RAB40C-206ENST00000561781 NEUROD1Q13562 356 aa29.05■■■□□ 2.24
RAB40C-206ENST00000561781 SMARCA2P51531 1590 aa29.05■■■□□ 2.24
RAB40C-206ENST00000561781 PEG3Q9GZU2 1588 aa29.02■■■□□ 2.24
RAB40C-206ENST00000561781 GTF3C3Q9Y5Q9 886 aa29.02■■■□□ 2.24
RAB40C-206ENST00000561781 NCAPD3P42695 1498 aa28.99■■■□□ 2.23
RAB40C-206ENST00000561781 BAZ1BQ9UIG0 1483 aaKnown RBP28.98■■■□□ 2.23
RAB40C-206ENST00000561781 CENPBP07199 599 aaPredicted RBP28.92■■■□□ 2.22
RAB40C-206ENST00000561781 HMGXB3Q12766 1538 aa28.86■■■□□ 2.21
RAB40C-206ENST00000561781 TOP2AP11388 1531 aaKnown RBP28.77■■■□□ 2.2
RAB40C-206ENST00000561781 BCL11AQ9H165 835 aa28.61■■■□□ 2.17
RAB40C-206ENST00000561781 CCDC88BA6NC98 1476 aa28.53■■■□□ 2.16
RAB40C-206ENST00000561781 NESP48681 1621 aa28.45■■■□□ 2.15
RAB40C-206ENST00000561781 DIEXFQ68CQ4 756 aaKnown RBP28.31■■■□□ 2.12
RAB40C-206ENST00000561781 FAM9AQ8IZU1 332 aaPredicted RBP28.3■■■□□ 2.12
RAB40C-206ENST00000561781 CADPSQ9ULU8 1353 aa28.25■■■□□ 2.11
RAB40C-206ENST00000561781 CFTRP13569 1480 aa28.17■■■□□ 2.1
RAB40C-206ENST00000561781 ANP32EQ9BTT0 268 aa28.16■■■□□ 2.1
RAB40C-206ENST00000561781 LAMC3Q9Y6N6 1575 aa28.12■■■□□ 2.09
RAB40C-206ENST00000561781 PRKCSHP14314 528 aaPredicted RBP28.1■■■□□ 2.09
RAB40C-206ENST00000561781 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.04■■■□□ 2.08
RAB40C-206ENST00000561781 ERCC6Q03468 1493 aa28.01■■■□□ 2.08
RAB40C-206ENST00000561781 CCER1Q8TC90 406 aaPredicted RBP28■■■□□ 2.07
RAB40C-206ENST00000561781 KIF21AQ7Z4S6 1674 aa27.99■■■□□ 2.07
RAB40C-206ENST00000561781 FANCD2Q9BXW9 1451 aa27.98■■■□□ 2.07
RAB40C-206ENST00000561781 PDS5BQ9NTI5 1447 aa27.95■■■□□ 2.07
RAB40C-206ENST00000561781 CEP164Q9UPV0 1460 aa27.86■■■□□ 2.05
RAB40C-206ENST00000561781 PRDM2Q13029 1718 aa27.86■■■□□ 2.05
RAB40C-206ENST00000561781 TRIM41Q8WV44 630 aa27.86■■■□□ 2.05
RAB40C-206ENST00000561781 ABCC8Q09428 1581 aa27.79■■■□□ 2.04
RAB40C-206ENST00000561781 ERICH6Q7L0X2 663 aa27.79■■■□□ 2.04
RAB40C-206ENST00000561781 CLSPNQ9HAW4 1339 aa27.76■■■□□ 2.03
RAB40C-206ENST00000561781 YTHDC1Q96MU7 727 aaKnown RBP27.75■■■□□ 2.03
RAB40C-206ENST00000561781 EHMT2Q96KQ7 1210 aa27.74■■■□□ 2.03
RAB40C-206ENST00000561781 CSRNP3Q8WYN3 585 aa27.73■■■□□ 2.03
RAB40C-206ENST00000561781 URB2Q14146 1524 aaKnown RBP27.72■■■□□ 2.03
RAB40C-206ENST00000561781 THOC2Q8NI27 1593 aaKnown RBP27.71■■■□□ 2.03
RAB40C-206ENST00000561781 MRC2Q9UBG0 1479 aa27.69■■■□□ 2.02
RAB40C-206ENST00000561781 ZNF316A6NFI3 1004 aaPredicted RBP27.61■■■□□ 2.01
RAB40C-206ENST00000561781 CUX1P39880 1505 aa27.61■■■□□ 2.01
RAB40C-206ENST00000561781 TSHZ2Q9NRE2 1034 aa27.58■■■□□ 2.01
RAB40C-206ENST00000561781 TOPBP1Q92547 1522 aa27.57■■■□□ 2
RAB40C-206ENST00000561781 WRNQ14191 1432 aaPredicted RBP eCLIP27.57■■■□□ 2
RAB40C-206ENST00000561781 WDR62O43379 1518 aa27.56■■■□□ 2
RAB40C-206ENST00000561781 SYNJ1O43426 1573 aa27.56■■■□□ 2
RAB40C-206ENST00000561781 DNMBPQ6XZF7 1577 aa27.51■■□□□ 1.99
RAB40C-206ENST00000561781 SUPT16HQ9Y5B9 1047 aaKnown RBP27.47■■□□□ 1.99
RAB40C-206ENST00000561781 MIER1Q8N108 512 aa27.45■■□□□ 1.98
RAB40C-206ENST00000561781 FGD5Q6ZNL6 1462 aa27.43■■□□□ 1.98
RAB40C-206ENST00000561781 POLA1P09884 1462 aaPredicted RBP27.41■■□□□ 1.98
RAB40C-206ENST00000561781 RAD54L2Q9Y4B4 1467 aa27.4■■□□□ 1.98
RAB40C-206ENST00000561781 CUX2O14529 1486 aa27.39■■□□□ 1.98
RAB40C-206ENST00000561781 APLP2Q06481 763 aa27.39■■□□□ 1.97
RAB40C-206ENST00000561781 TOP2BQ02880 1626 aa27.38■■□□□ 1.97
RAB40C-206ENST00000561781 BIVM-ERCC5R4GMW8 1640 aa27.34■■□□□ 1.97
RAB40C-206ENST00000561781 SOGA1O94964 1423 aa27.28■■□□□ 1.96
RAB40C-206ENST00000561781 ZNF608Q9ULD9 1512 aaPredicted RBP27.26■■□□□ 1.95
RAB40C-206ENST00000561781 TARBP1Q13395 1621 aaKnown RBP27.21■■□□□ 1.95
RAB40C-206ENST00000561781 TDRD9Q8NDG6 1382 aaKnown RBP27.2■■□□□ 1.95
RAB40C-206ENST00000561781 IFT140Q96RY7 1462 aa27.18■■□□□ 1.94
RAB40C-206ENST00000561781 AQRO60306 1485 aaKnown RBP eCLIP27.16■■□□□ 1.94
RAB40C-206ENST00000561781 RUSC2Q8N2Y8 1516 aa27.07■■□□□ 1.92
RAB40C-206ENST00000561781 ABCA10Q8WWZ4 1543 aa27.07■■□□□ 1.92
RAB40C-206ENST00000561781 WDR97A6NE52 1622 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms