RNA–Protein interactions for RNA: ENST00000560483.1

LRRC28-219, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-219ENST00000560483 WDR62O43379 1518 aa14.02□□□□□ -0.16
LRRC28-219ENST00000560483 EVX2Q03828 476 aa14.01□□□□□ -0.17
LRRC28-219ENST00000560483 URB2Q14146 1524 aaKnown RBP13.98□□□□□ -0.17
LRRC28-219ENST00000560483 HAX1O00165 279 aa13.96□□□□□ -0.17
LRRC28-219ENST00000560483 ABCC8Q09428 1581 aa13.92□□□□□ -0.18
LRRC28-219ENST00000560483 TOPBP1Q92547 1522 aa13.91□□□□□ -0.18
LRRC28-219ENST00000560483 MKRN4PQ13434 485 aaPredicted RBP13.91□□□□□ -0.18
LRRC28-219ENST00000560483 DNMBPQ6XZF7 1577 aa13.9□□□□□ -0.18
LRRC28-219ENST00000560483 ATXN8OSP0DMR3 200 aa13.86□□□□□ -0.19
LRRC28-219ENST00000560483 IFT140Q96RY7 1462 aa13.83□□□□□ -0.2
LRRC28-219ENST00000560483 SPDYE2BA6NHP3 402 aa13.81□□□□□ -0.2
LRRC28-219ENST00000560483 SPDYE6P0CI01 402 aa13.81□□□□□ -0.2
LRRC28-219ENST00000560483 SPDYE2Q495Y8 402 aa13.81□□□□□ -0.2
LRRC28-219ENST00000560483 CUX1P39880 1505 aa13.8□□□□□ -0.2
LRRC28-219ENST00000560483 POLA1P09884 1462 aaPredicted RBP13.79□□□□□ -0.2
LRRC28-219ENST00000560483 FGD5Q6ZNL6 1462 aa13.79□□□□□ -0.2
LRRC28-219ENST00000560483 SOGA1O94964 1423 aa13.78□□□□□ -0.2
LRRC28-219ENST00000560483 ZNF608Q9ULD9 1512 aaPredicted RBP13.77□□□□□ -0.21
LRRC28-219ENST00000560483 RAD54L2Q9Y4B4 1467 aa13.77□□□□□ -0.21
LRRC28-219ENST00000560483 WRNQ14191 1432 aaPredicted RBP eCLIP13.75□□□□□ -0.21
LRRC28-219ENST00000560483 FBLN2P98095 1184 aa13.75□□□□□ -0.21
LRRC28-219ENST00000560483 PRKAR2AP13861 404 aaKnown RBP13.74□□□□□ -0.21
LRRC28-219ENST00000560483 CLEC11AQ9Y240 323 aa13.73□□□□□ -0.21
LRRC28-219ENST00000560483 EIF4G3O43432 1585 aaKnown RBP13.73□□□□□ -0.21
LRRC28-219ENST00000560483 AQRO60306 1485 aaKnown RBP eCLIP13.73□□□□□ -0.21
LRRC28-219ENST00000560483 DNAJC5Q9H3Z4 198 aa13.72□□□□□ -0.21
LRRC28-219ENST00000560483 TARBP1Q13395 1621 aaKnown RBP13.72□□□□□ -0.21
LRRC28-219ENST00000560483 TDRD9Q8NDG6 1382 aaKnown RBP13.71□□□□□ -0.21
LRRC28-219ENST00000560483 SSUH2Q9Y2M2 353 aa13.7□□□□□ -0.22
LRRC28-219ENST00000560483 SYNJ1O43426 1573 aa13.7□□□□□ -0.22
LRRC28-219ENST00000560483 TOP2BQ02880 1626 aa13.68□□□□□ -0.22
LRRC28-219ENST00000560483 BIVM-ERCC5R4GMW8 1640 aa13.67□□□□□ -0.22
LRRC28-219ENST00000560483 CHADLQ6NUI6 762 aa13.64□□□□□ -0.23
LRRC28-219ENST00000560483 SPDYE1Q8NFV5 336 aaPredicted RBP13.63□□□□□ -0.23
LRRC28-219ENST00000560483 ZNF692Q9BU19 519 aaPredicted RBP13.63□□□□□ -0.23
LRRC28-219ENST00000560483 GAPVD1Q14C86 1478 aa13.61□□□□□ -0.23
LRRC28-219ENST00000560483 C19orf67A6NJJ6 358 aa13.61□□□□□ -0.23
LRRC28-219ENST00000560483 CHMP7Q8WUX9 453 aaPredicted RBP13.61□□□□□ -0.23
LRRC28-219ENST00000560483 WDR97A6NE52 1622 aa13.61□□□□□ -0.23
LRRC28-219ENST00000560483 ABCA10Q8WWZ4 1543 aa13.6□□□□□ -0.23
LRRC28-219ENST00000560483 GRIN2BQ13224 1484 aa13.6□□□□□ -0.23
LRRC28-219ENST00000560483 SNAPC4Q5SXM2 1469 aa13.6□□□□□ -0.23
LRRC28-219ENST00000560483 PBRM1Q86U86 1689 aa13.59□□□□□ -0.23
LRRC28-219ENST00000560483 CHD1O14646 1710 aa13.59□□□□□ -0.23
LRRC28-219ENST00000560483 TRIM41Q8WV44 630 aa13.55□□□□□ -0.24
LRRC28-219ENST00000560483 ABCA5Q8WWZ7 1642 aa13.54□□□□□ -0.24
LRRC28-219ENST00000560483 MAGI1Q96QZ7 1491 aaPredicted RBP13.54□□□□□ -0.24
LRRC28-219ENST00000560483 GABBR2O75899 941 aa13.5□□□□□ -0.25
LRRC28-219ENST00000560483 SYNJ2O15056 1496 aa13.49□□□□□ -0.25
LRRC28-219ENST00000560483 KIF27Q86VH2 1401 aa13.48□□□□□ -0.25
LRRC28-219ENST00000560483 ERICH3Q5RHP9 1530 aa13.45□□□□□ -0.26
LRRC28-219ENST00000560483 ADAMTS12P58397 1594 aa13.45□□□□□ -0.26
LRRC28-219ENST00000560483 FHAD1B1AJZ9 1412 aa13.44□□□□□ -0.26
LRRC28-219ENST00000560483 GRIN2AQ12879 1464 aa13.42□□□□□ -0.26
LRRC28-219ENST00000560483 RIMBP3CA6NJZ7 1639 aa13.39□□□□□ -0.27
LRRC28-219ENST00000560483 RIMBP3BA6NNM3 1639 aa13.39□□□□□ -0.27
LRRC28-219ENST00000560483 RIMBP3Q9UFD9 1639 aa13.39□□□□□ -0.27
LRRC28-219ENST00000560483 PRR29P0C7W0 189 aa13.38□□□□□ -0.27
LRRC28-219ENST00000560483 ARHGEF11O15085 1522 aa13.37□□□□□ -0.27
LRRC28-219ENST00000560483 CUL7Q14999 1698 aa13.37□□□□□ -0.27
LRRC28-219ENST00000560483 IGF1RP08069 1367 aa13.36□□□□□ -0.27
LRRC28-219ENST00000560483 POTEIP0CG38 1075 aa13.35□□□□□ -0.27
LRRC28-219ENST00000560483 CYB5RLQ6IPT4 315 aa13.35□□□□□ -0.27
LRRC28-219ENST00000560483 CLASP1Q7Z460 1538 aa13.34□□□□□ -0.27
LRRC28-219ENST00000560483 CARMIL1Q5VZK9 1371 aa13.34□□□□□ -0.27
LRRC28-219ENST00000560483 CEP170Q5SW79 1584 aa13.33□□□□□ -0.28
LRRC28-219ENST00000560483 FAM9AQ8IZU1 332 aaPredicted RBP13.33□□□□□ -0.28
LRRC28-219ENST00000560483 RUSC2Q8N2Y8 1516 aa13.33□□□□□ -0.28
LRRC28-219ENST00000560483 LHX8Q68G74 356 aa13.3□□□□□ -0.28
LRRC28-219ENST00000560483 NUP160Q12769 1436 aa13.3□□□□□ -0.28
LRRC28-219ENST00000560483 CSRNP3Q8WYN3 585 aa13.29□□□□□ -0.28
LRRC28-219ENST00000560483 CD44P16070 742 aaKnown RBP13.27□□□□□ -0.29
LRRC28-219ENST00000560483 FARP1Q9Y4F1 1045 aaPredicted RBP13.27□□□□□ -0.29
LRRC28-219ENST00000560483 TTBK1Q5TCY1 1321 aaPredicted RBP13.27□□□□□ -0.29
LRRC28-219ENST00000560483 RAPGEF2Q9Y4G8 1499 aa13.26□□□□□ -0.29
LRRC28-219ENST00000560483 JPH4Q96JJ6 628 aa13.25□□□□□ -0.29
LRRC28-219ENST00000560483 ARAP1Q96P48 1450 aa13.24□□□□□ -0.29
LRRC28-219ENST00000560483 EHMT2Q96KQ7 1210 aa13.24□□□□□ -0.29
LRRC28-219ENST00000560483 PRG4Q92954 1404 aaPredicted RBP13.23□□□□□ -0.29
LRRC28-219ENST00000560483 KIAA0586Q9BVV6 1533 aa13.21□□□□□ -0.29
LRRC28-219ENST00000560483 ERCC6L2Q5T890 1561 aa13.2□□□□□ -0.3
LRRC28-219ENST00000560483 EEA1Q15075 1411 aa13.2□□□□□ -0.3
LRRC28-219ENST00000560483 SHROOM2Q13796 1616 aa13.19□□□□□ -0.3
LRRC28-219ENST00000560483 RANGAP1P46060 587 aaPredicted RBP13.18□□□□□ -0.3
LRRC28-219ENST00000560483 IQGAP2Q13576 1575 aa13.18□□□□□ -0.3
LRRC28-219ENST00000560483 CTTNBP2Q8WZ74 1663 aa13.15□□□□□ -0.3
LRRC28-219ENST00000560483 CARMIL2Q6F5E8 1435 aa13.15□□□□□ -0.3
LRRC28-219ENST00000560483 PRXQ9BXM0 1461 aa13.14□□□□□ -0.31
LRRC28-219ENST00000560483 NPM1P06748 294 aaKnown RBP eCLIP13.12□□□□□ -0.31
LRRC28-219ENST00000560483 UBTFP17480 764 aaKnown RBP13.12□□□□□ -0.31
LRRC28-219ENST00000560483 CREBZFQ9NS37 354 aa13.12□□□□□ -0.31
LRRC28-219ENST00000560483 PTPRGP23470 1445 aa13.08□□□□□ -0.32
LRRC28-219ENST00000560483 P3H3Q8IVL6 736 aa13.08□□□□□ -0.32
LRRC28-219ENST00000560483 TNIKQ9UKE5 1360 aa13.07□□□□□ -0.32
LRRC28-219ENST00000560483 GOLGA3Q08378 1498 aa13.05□□□□□ -0.32
LRRC28-219ENST00000560483 KIF21BO75037 1637 aa13.05□□□□□ -0.32
LRRC28-219ENST00000560483 UGGT2Q9NYU1 1516 aa13.04□□□□□ -0.32
LRRC28-219ENST00000560483 KIAA0556O60303 1618 aa13.04□□□□□ -0.32
LRRC28-219ENST00000560483 ZNF579Q8NAF0 562 aaKnown RBP13.04□□□□□ -0.32
LRRC28-219ENST00000560483 ZRANB1Q9UGI0 708 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms