RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 WDR97A6NE52 1622 aa16.85■□□□□ 0.29
VIPAS39-211ENST00000557658 CARMIL1Q5VZK9 1371 aa16.85■□□□□ 0.29
VIPAS39-211ENST00000557658 PHLDB1Q86UU1 1377 aa16.84■□□□□ 0.29
VIPAS39-211ENST00000557658 FHAD1B1AJZ9 1412 aa16.84■□□□□ 0.29
VIPAS39-211ENST00000557658 CFAP43Q8NDM7 1665 aa16.84■□□□□ 0.29
VIPAS39-211ENST00000557658 TIMELESSQ9UNS1 1208 aa16.84■□□□□ 0.29
VIPAS39-211ENST00000557658 DDX10Q13206 875 aaKnown RBP16.82■□□□□ 0.28
VIPAS39-211ENST00000557658 FAM50AQ14320 339 aaKnown RBP16.81■□□□□ 0.28
VIPAS39-211ENST00000557658 SIN3AQ96ST3 1273 aa16.8■□□□□ 0.28
VIPAS39-211ENST00000557658 PCF11O94913 1555 aaKnown RBP16.77■□□□□ 0.28
VIPAS39-211ENST00000557658 FGD5Q6ZNL6 1462 aa16.77■□□□□ 0.28
VIPAS39-211ENST00000557658 PPP1R15AO75807 674 aaPredicted RBP16.77■□□□□ 0.27
VIPAS39-211ENST00000557658 FKBP8Q14318 412 aa16.75■□□□□ 0.27
VIPAS39-211ENST00000557658 ANP32EQ9BTT0 268 aa16.75■□□□□ 0.27
VIPAS39-211ENST00000557658 CCER2I3L3R5 266 aa16.74■□□□□ 0.27
VIPAS39-211ENST00000557658 CADPSQ9ULU8 1353 aa16.74■□□□□ 0.27
VIPAS39-211ENST00000557658 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.73■□□□□ 0.27
VIPAS39-211ENST00000557658 BCANQ96GW7 911 aa16.73■□□□□ 0.27
VIPAS39-211ENST00000557658 NEFLP07196 543 aa16.71■□□□□ 0.27
VIPAS39-211ENST00000557658 FYCO1Q9BQS8 1478 aa16.71■□□□□ 0.27
VIPAS39-211ENST00000557658 ANP32CO43423 234 aa16.7■□□□□ 0.26
VIPAS39-211ENST00000557658 ATP1B4Q9UN42 357 aaPredicted RBP16.7■□□□□ 0.26
VIPAS39-211ENST00000557658 EFCAB5A4FU69 1503 aa16.69■□□□□ 0.26
VIPAS39-211ENST00000557658 P3H3Q8IVL6 736 aa16.69■□□□□ 0.26
VIPAS39-211ENST00000557658 AQRO60306 1485 aaKnown RBP eCLIP16.68■□□□□ 0.262e-6■■■■■ 28.9
VIPAS39-211ENST00000557658 CASKIN1Q8WXD9 1431 aa16.67■□□□□ 0.26
VIPAS39-211ENST00000557658 FHOD3Q2V2M9 1422 aa16.67■□□□□ 0.26
VIPAS39-211ENST00000557658 HIRIP3Q9BW71 556 aaPredicted RBP16.64■□□□□ 0.25
VIPAS39-211ENST00000557658 TONSLQ96HA7 1378 aa16.63■□□□□ 0.25
VIPAS39-211ENST00000557658 FGD6Q6ZV73 1430 aa16.62■□□□□ 0.25
VIPAS39-211ENST00000557658 TRIM52Q96A61 297 aa16.62■□□□□ 0.25
VIPAS39-211ENST00000557658 CCDC18Q5T9S5 1454 aa16.61■□□□□ 0.25
VIPAS39-211ENST00000557658 CTTNBP2Q8WZ74 1663 aa16.61■□□□□ 0.25
VIPAS39-211ENST00000557658 CC2D2AQ9P2K1 1620 aa16.6■□□□□ 0.25
VIPAS39-211ENST00000557658 CUL7Q14999 1698 aa16.6■□□□□ 0.25
VIPAS39-211ENST00000557658 ABCA10Q8WWZ4 1543 aa16.59■□□□□ 0.25
VIPAS39-211ENST00000557658 FMN1Q68DA7 1419 aa16.59■□□□□ 0.25
VIPAS39-211ENST00000557658 UACAQ9BZF9 1416 aa16.58■□□□□ 0.25
VIPAS39-211ENST00000557658 FANCD2Q9BXW9 1451 aa16.58■□□□□ 0.24
VIPAS39-211ENST00000557658 DNMBPQ6XZF7 1577 aa16.57■□□□□ 0.24
VIPAS39-211ENST00000557658 HFM1A2PYH4 1435 aa16.57■□□□□ 0.24
VIPAS39-211ENST00000557658 PTPN23Q9H3S7 1636 aa16.56■□□□□ 0.24
VIPAS39-211ENST00000557658 RBM19Q9Y4C8 960 aaKnown RBP16.55■□□□□ 0.24
VIPAS39-211ENST00000557658 RAD54L2Q9Y4B4 1467 aa16.55■□□□□ 0.24
VIPAS39-211ENST00000557658 MTUS2Q5JR59 1369 aa16.54■□□□□ 0.24
VIPAS39-211ENST00000557658 SNAPC4Q5SXM2 1469 aa16.53■□□□□ 0.24
VIPAS39-211ENST00000557658 POLA1P09884 1462 aaPredicted RBP16.52■□□□□ 0.24
VIPAS39-211ENST00000557658 PTPRKQ15262 1439 aa16.51■□□□□ 0.23
VIPAS39-211ENST00000557658 TOPBP1Q92547 1522 aa16.51■□□□□ 0.23
VIPAS39-211ENST00000557658 NAIPQ13075 1403 aa16.49■□□□□ 0.23
VIPAS39-211ENST00000557658 MYOM3Q5VTT5 1437 aa16.49■□□□□ 0.23
VIPAS39-211ENST00000557658 NCOA2Q15596 1464 aa16.47■□□□□ 0.23
VIPAS39-211ENST00000557658 SUPT6HQ7KZ85 1726 aaKnown RBP16.47■□□□□ 0.23
VIPAS39-211ENST00000557658 SAMD9Q5K651 1589 aa16.46■□□□□ 0.23
VIPAS39-211ENST00000557658 THOC2Q8NI27 1593 aaKnown RBP16.46■□□□□ 0.23
VIPAS39-211ENST00000557658 LRRIQ1Q96JM4 1722 aa16.46■□□□□ 0.23
VIPAS39-211ENST00000557658 KDM5BQ9UGL1 1544 aa16.46■□□□□ 0.22
VIPAS39-211ENST00000557658 EHBP1L1Q8N3D4 1523 aa16.44■□□□□ 0.22
VIPAS39-211ENST00000557658 HNRNPUQ00839 825 aaKnown RBP eCLIP16.44■□□□□ 0.22
VIPAS39-211ENST00000557658 GRIN2BQ13224 1484 aa16.44■□□□□ 0.22
VIPAS39-211ENST00000557658 UGGT2Q9NYU1 1516 aa16.39■□□□□ 0.21
VIPAS39-211ENST00000557658 GCC2Q8IWJ2 1684 aa16.39■□□□□ 0.21
VIPAS39-211ENST00000557658 HECW1Q76N89 1606 aa16.39■□□□□ 0.21
VIPAS39-211ENST00000557658 WASHC2AQ641Q2 1341 aa16.38■□□□□ 0.21
VIPAS39-211ENST00000557658 KIF21AQ7Z4S6 1674 aa16.38■□□□□ 0.21
VIPAS39-211ENST00000557658 HSPA5P11021 654 aaKnown RBP16.38■□□□□ 0.21
VIPAS39-211ENST00000557658 CDK11AQ9UQ88 783 aaPredicted RBP16.37■□□□□ 0.21
VIPAS39-211ENST00000557658 ERICH6BQ5W0A0 696 aa16.37■□□□□ 0.21
VIPAS39-211ENST00000557658 ARHGEF11O15085 1522 aa16.37■□□□□ 0.21
VIPAS39-211ENST00000557658 ABCA5Q8WWZ7 1642 aa16.36■□□□□ 0.21
VIPAS39-211ENST00000557658 EIF4G2P78344 907 aaKnown RBP eCLIP16.35■□□□□ 0.21
VIPAS39-211ENST00000557658 TCOF1Q13428 1488 aaKnown RBP16.35■□□□□ 0.21
VIPAS39-211ENST00000557658 AKNAQ7Z591 1439 aa16.34■□□□□ 0.21
VIPAS39-211ENST00000557658 FANCIQ9NVI1 1328 aa16.34■□□□□ 0.21
VIPAS39-211ENST00000557658 NESP48681 1621 aa16.34■□□□□ 0.21
VIPAS39-211ENST00000557658 RRP7BPQ9NSQ0 103 aa16.34■□□□□ 0.21
VIPAS39-211ENST00000557658 CNTLNQ9NXG0 1405 aa16.34■□□□□ 0.21
VIPAS39-211ENST00000557658 BCL11AQ9H165 835 aa16.33■□□□□ 0.2
VIPAS39-211ENST00000557658 IRX6P78412 446 aaPredicted RBP16.32■□□□□ 0.2
VIPAS39-211ENST00000557658 GAPVD1Q14C86 1478 aa16.32■□□□□ 0.2
VIPAS39-211ENST00000557658 DENND4BO75064 1496 aaPredicted RBP16.31■□□□□ 0.2
VIPAS39-211ENST00000557658 URB2Q14146 1524 aaKnown RBP16.31■□□□□ 0.2
VIPAS39-211ENST00000557658 MAGI3Q5TCQ9 1506 aa16.31■□□□□ 0.2
VIPAS39-211ENST00000557658 MSH5O43196 834 aa16.31■□□□□ 0.2
VIPAS39-211ENST00000557658 TDRD9Q8NDG6 1382 aaKnown RBP16.31■□□□□ 0.2
VIPAS39-211ENST00000557658 CHIC2Q9UKJ5 165 aa16.31■□□□□ 0.2
VIPAS39-211ENST00000557658 PPP4R2Q9NY27 417 aa16.29■□□□□ 0.2
VIPAS39-211ENST00000557658 LAMC3Q9Y6N6 1575 aa16.27■□□□□ 0.2
VIPAS39-211ENST00000557658 MPHOSPH9Q99550 1183 aa16.27■□□□□ 0.2
VIPAS39-211ENST00000557658 KDM6BO15054 1643 aa16.27■□□□□ 0.2
VIPAS39-211ENST00000557658 NCOA1Q15788 1441 aa16.27■□□□□ 0.19
VIPAS39-211ENST00000557658 MIA2Q96PC5 1412 aa16.26■□□□□ 0.19
VIPAS39-211ENST00000557658 CCDC7Q96M83 1385 aa16.26■□□□□ 0.19
VIPAS39-211ENST00000557658 ERICH6Q7L0X2 663 aa16.25■□□□□ 0.19
VIPAS39-211ENST00000557658 L3MBTL2Q969R5 705 aa16.25■□□□□ 0.19
VIPAS39-211ENST00000557658 PRKRIP1Q9H875 184 aaPredicted RBP16.25■□□□□ 0.19
VIPAS39-211ENST00000557658 CCDC184Q52MB2 194 aa16.24■□□□□ 0.19
VIPAS39-211ENST00000557658 EPRSP07814 1512 aaKnown RBP16.22■□□□□ 0.19
VIPAS39-211ENST00000557658 ZBED9Q6R2W3 1325 aa16.22■□□□□ 0.19
VIPAS39-211ENST00000557658 MRS2Q9HD23 443 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms