RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 NISCHQ9Y2I1 1504 aa23.68■■□□□ 1.38
VIPAS39-211ENST00000557658 SHROOM4Q9ULL8 1493 aa20.36■□□□□ 0.85
VIPAS39-211ENST00000557658 SUPT5HO00267 1087 aaKnown RBP20.12■□□□□ 0.81
VIPAS39-211ENST00000557658 ZCCHC6Q5VYS8 1495 aaKnown RBP20.09■□□□□ 0.81
VIPAS39-211ENST00000557658 CCDC180Q9P1Z9 1646 aa20.03■□□□□ 0.8
VIPAS39-211ENST00000557658 CHIC1Q5VXU3 224 aa19.73■□□□□ 0.75
VIPAS39-211ENST00000557658 MYO15BQ96JP2 1530 aa19.71■□□□□ 0.75
VIPAS39-211ENST00000557658 HRCP23327 699 aa19.66■□□□□ 0.74
VIPAS39-211ENST00000557658 DCAF8L2P0C7V8 631 aa19.51■□□□□ 0.71
VIPAS39-211ENST00000557658 DCAF1Q9Y4B6 1507 aa19.45■□□□□ 0.7
VIPAS39-211ENST00000557658 PCGF6Q9BYE7 350 aa19.41■□□□□ 0.7
VIPAS39-211ENST00000557658 PPARGC1BQ86YN6 1023 aaKnown RBP19.14■□□□□ 0.65
VIPAS39-211ENST00000557658 LOC105371045A0A1W2PR82 267 aa19.12■□□□□ 0.65
VIPAS39-211ENST00000557658 ABCC9O60706 1549 aa19.03■□□□□ 0.64
VIPAS39-211ENST00000557658 TRIM26Q12899 539 aaPredicted RBP19.02■□□□□ 0.64
VIPAS39-211ENST00000557658 RSF1Q96T23 1441 aaPredicted RBP18.84■□□□□ 0.61
VIPAS39-211ENST00000557658 ZEB1P37275 1124 aaPredicted RBP18.79■□□□□ 0.6
VIPAS39-211ENST00000557658 SCRIBQ14160 1630 aa18.78■□□□□ 0.6
VIPAS39-211ENST00000557658 TRIM41Q8WV44 630 aa18.75■□□□□ 0.59
VIPAS39-211ENST00000557658 RB1CC1Q8TDY2 1594 aa18.71■□□□□ 0.59
VIPAS39-211ENST00000557658 FAM9AQ8IZU1 332 aaPredicted RBP18.57■□□□□ 0.56
VIPAS39-211ENST00000557658 NACADO15069 1562 aa18.43■□□□□ 0.54
VIPAS39-211ENST00000557658 CECR2Q9BXF3 1484 aa18.41■□□□□ 0.54
VIPAS39-211ENST00000557658 MROH2BQ7Z745 1585 aa18.4■□□□□ 0.54
VIPAS39-211ENST00000557658 PELP1Q8IZL8 1130 aaKnown RBP18.38■□□□□ 0.53
VIPAS39-211ENST00000557658 EHMT2Q96KQ7 1210 aa18.37■□□□□ 0.53
VIPAS39-211ENST00000557658 WIZO95785 1651 aa18.34■□□□□ 0.53
VIPAS39-211ENST00000557658 SCAF1Q9H7N4 1312 aaKnown RBP18.28■□□□□ 0.52
VIPAS39-211ENST00000557658 BAZ1AQ9NRL2 1556 aaPredicted RBP18.27■□□□□ 0.52
VIPAS39-211ENST00000557658 EIF4G1Q04637 1599 aaKnown RBP18.23■□□□□ 0.51
VIPAS39-211ENST00000557658 CCER1Q8TC90 406 aaPredicted RBP18.16■□□□□ 0.5
VIPAS39-211ENST00000557658 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.15■□□□□ 0.5
VIPAS39-211ENST00000557658 WRNQ14191 1432 aaPredicted RBP eCLIP18.08■□□□□ 0.49
VIPAS39-211ENST00000557658 TOP2AP11388 1531 aaKnown RBP18.07■□□□□ 0.48
VIPAS39-211ENST00000557658 ACIN1Q9UKV3 1341 aaKnown RBP18.04■□□□□ 0.48
VIPAS39-211ENST00000557658 ABCC8Q09428 1581 aa18.02■□□□□ 0.48
VIPAS39-211ENST00000557658 CCDC88BA6NC98 1476 aa18.01■□□□□ 0.47
VIPAS39-211ENST00000557658 CEP162Q5TB80 1403 aa18■□□□□ 0.47
VIPAS39-211ENST00000557658 SMARCA4P51532 1647 aa17.98■□□□□ 0.47
VIPAS39-211ENST00000557658 DIEXFQ68CQ4 756 aaKnown RBP17.98■□□□□ 0.47
VIPAS39-211ENST00000557658 SMARCA2P51531 1590 aa17.97■□□□□ 0.47
VIPAS39-211ENST00000557658 TNIKQ9UKE5 1360 aa17.96■□□□□ 0.47
VIPAS39-211ENST00000557658 NEUROD1Q13562 356 aa17.95■□□□□ 0.46
VIPAS39-211ENST00000557658 CENPBP07199 599 aaPredicted RBP17.94■□□□□ 0.46
VIPAS39-211ENST00000557658 EEA1Q15075 1411 aa17.94■□□□□ 0.46
VIPAS39-211ENST00000557658 SOGA1O94964 1423 aa17.9■□□□□ 0.46
VIPAS39-211ENST00000557658 TTBK1Q5TCY1 1321 aaPredicted RBP17.88■□□□□ 0.45
VIPAS39-211ENST00000557658 CSRNP3Q8WYN3 585 aa17.86■□□□□ 0.45
VIPAS39-211ENST00000557658 UBTFP17480 764 aaKnown RBP17.82■□□□□ 0.44
VIPAS39-211ENST00000557658 GTF3C3Q9Y5Q9 886 aa17.82■□□□□ 0.44
VIPAS39-211ENST00000557658 GOLGA3Q08378 1498 aa17.81■□□□□ 0.44
VIPAS39-211ENST00000557658 UNC13AQ9UPW8 1703 aa17.81■□□□□ 0.44
VIPAS39-211ENST00000557658 RUSC2Q8N2Y8 1516 aa17.79■□□□□ 0.44
VIPAS39-211ENST00000557658 ZNF316A6NFI3 1004 aaPredicted RBP17.78■□□□□ 0.44
VIPAS39-211ENST00000557658 CEP164Q9UPV0 1460 aa17.68■□□□□ 0.42
VIPAS39-211ENST00000557658 KIF21BO75037 1637 aa17.67■□□□□ 0.42
VIPAS39-211ENST00000557658 PEG3Q9GZU2 1588 aa17.62■□□□□ 0.41
VIPAS39-211ENST00000557658 CLIP1P30622 1438 aa17.61■□□□□ 0.41
VIPAS39-211ENST00000557658 SYNJ1O43426 1573 aa17.6■□□□□ 0.41
VIPAS39-211ENST00000557658 HNRNPUL2Q1KMD3 747 aaKnown RBP17.59■□□□□ 0.41
VIPAS39-211ENST00000557658 VPS8Q8N3P4 1428 aa17.57■□□□□ 0.4
VIPAS39-211ENST00000557658 MYT1Q01538 1121 aa17.57■□□□□ 0.4
VIPAS39-211ENST00000557658 BAZ1BQ9UIG0 1483 aaKnown RBP17.57■□□□□ 0.4
VIPAS39-211ENST00000557658 YTHDC1Q96MU7 727 aaKnown RBP17.54■□□□□ 0.4
VIPAS39-211ENST00000557658 BICRAQ9NZM4 1560 aa17.54■□□□□ 0.4
VIPAS39-211ENST00000557658 APLP2Q06481 763 aa17.53■□□□□ 0.4
VIPAS39-211ENST00000557658 MIER1Q8N108 512 aa17.52■□□□□ 0.4
VIPAS39-211ENST00000557658 PABPN1Q86U42 306 aaKnown RBP eCLIP17.48■□□□□ 0.39
VIPAS39-211ENST00000557658 RAPGEF2Q9Y4G8 1499 aa17.47■□□□□ 0.39
VIPAS39-211ENST00000557658 ATAD2BQ9ULI0 1458 aa17.42■□□□□ 0.38
VIPAS39-211ENST00000557658 CLSPNQ9HAW4 1339 aa17.4■□□□□ 0.38
VIPAS39-211ENST00000557658 TOP2BQ02880 1626 aa17.38■□□□□ 0.37
VIPAS39-211ENST00000557658 RANGAP1P46060 587 aaPredicted RBP17.34■□□□□ 0.37
VIPAS39-211ENST00000557658 ERICH3Q5RHP9 1530 aa17.33■□□□□ 0.37
VIPAS39-211ENST00000557658 BIVM-ERCC5R4GMW8 1640 aa17.32■□□□□ 0.36
VIPAS39-211ENST00000557658 DHX57Q6P158 1386 aaKnown RBP17.31■□□□□ 0.36
VIPAS39-211ENST00000557658 ARAP1Q96P48 1450 aa17.27■□□□□ 0.36
VIPAS39-211ENST00000557658 PRXQ9BXM0 1461 aa17.27■□□□□ 0.36
VIPAS39-211ENST00000557658 RRBP1Q9P2E9 1410 aaKnown RBP17.21■□□□□ 0.35
VIPAS39-211ENST00000557658 KANK4Q5T7N3 995 aaPredicted RBP17.19■□□□□ 0.34
VIPAS39-211ENST00000557658 CUX2O14529 1486 aa17.17■□□□□ 0.34
VIPAS39-211ENST00000557658 KIF27Q86VH2 1401 aa17.14■□□□□ 0.33
VIPAS39-211ENST00000557658 CUX1P39880 1505 aa17.12■□□□□ 0.33
VIPAS39-211ENST00000557658 CCNB3Q8WWL7 1395 aa17.12■□□□□ 0.33
VIPAS39-211ENST00000557658 SUPT16HQ9Y5B9 1047 aaKnown RBP17.11■□□□□ 0.33
VIPAS39-211ENST00000557658 HMGXB3Q12766 1538 aa17.08■□□□□ 0.32
VIPAS39-211ENST00000557658 ARHGAP35Q9NRY4 1499 aa17.07■□□□□ 0.32
VIPAS39-211ENST00000557658 NCAPD3P42695 1498 aa17.04■□□□□ 0.32
VIPAS39-211ENST00000557658 ITGAEP38570 1179 aa16.99■□□□□ 0.31
VIPAS39-211ENST00000557658 RAB3GAP2Q9H2M9 1393 aa16.99■□□□□ 0.31
VIPAS39-211ENST00000557658 CFTRP13569 1480 aa16.99■□□□□ 0.31
VIPAS39-211ENST00000557658 MAP3K1Q13233 1512 aa16.99■□□□□ 0.31
VIPAS39-211ENST00000557658 MAPKBP1O60336 1514 aa16.97■□□□□ 0.31
VIPAS39-211ENST00000557658 TIAM1Q13009 1591 aa16.97■□□□□ 0.31
VIPAS39-211ENST00000557658 SETD5Q9C0A6 1442 aa16.93■□□□□ 0.3
VIPAS39-211ENST00000557658 PRDM2Q13029 1718 aa16.93■□□□□ 0.3
VIPAS39-211ENST00000557658 TSHZ2Q9NRE2 1034 aa16.9■□□□□ 0.3
VIPAS39-211ENST00000557658 IGF1RP08069 1367 aa16.9■□□□□ 0.3
VIPAS39-211ENST00000557658 LRRC9Q6ZRR7 1453 aa16.89■□□□□ 0.29
VIPAS39-211ENST00000557658 KCNH8Q96L42 1107 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms