RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 SLC4A2P04920 1241 aa14.22□□□□□ -0.13
PSEN1-209ENST00000553855 GRIN2BQ13224 1484 aa14.21□□□□□ -0.13
PSEN1-209ENST00000553855 GAPVD1Q14C86 1478 aa14.2□□□□□ -0.14
PSEN1-209ENST00000553855 CHMP7Q8WUX9 453 aaPredicted RBP14.19□□□□□ -0.14
PSEN1-209ENST00000553855 SNAPC4Q5SXM2 1469 aa14.16□□□□□ -0.14
PSEN1-209ENST00000553855 MAGI1Q96QZ7 1491 aaPredicted RBP14.16□□□□□ -0.14
PSEN1-209ENST00000553855 ABCA5Q8WWZ7 1642 aa14.12□□□□□ -0.15
PSEN1-209ENST00000553855 C1QBPQ07021 282 aaKnown RBP14.1□□□□□ -0.15
PSEN1-209ENST00000553855 SYNJ2O15056 1496 aa14.1□□□□□ -0.15
PSEN1-209ENST00000553855 PBRM1Q86U86 1689 aa14.09□□□□□ -0.15
PSEN1-209ENST00000553855 KIF27Q86VH2 1401 aa14.08□□□□□ -0.15
PSEN1-209ENST00000553855 MYCNP04198 464 aaPredicted RBP14.07□□□□□ -0.16
PSEN1-209ENST00000553855 CACNB1Q02641 598 aaPredicted RBP14.07□□□□□ -0.16
PSEN1-209ENST00000553855 U3KPZ7 1027 aaPredicted RBP14.07□□□□□ -0.16
PSEN1-209ENST00000553855 CHD1O14646 1710 aa14.07□□□□□ -0.16
PSEN1-209ENST00000553855 ERICH3Q5RHP9 1530 aa14.06□□□□□ -0.16
PSEN1-209ENST00000553855 ATXN8OSP0DMR3 200 aa14.06□□□□□ -0.16
PSEN1-209ENST00000553855 FHAD1B1AJZ9 1412 aa14.06□□□□□ -0.16
PSEN1-209ENST00000553855 ADAMTS12P58397 1594 aa14□□□□□ -0.17
PSEN1-209ENST00000553855 GRIN2AQ12879 1464 aa13.99□□□□□ -0.17
PSEN1-209ENST00000553855 IGF1RP08069 1367 aa13.96□□□□□ -0.17
PSEN1-209ENST00000553855 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.95□□□□□ -0.18
PSEN1-209ENST00000553855 HNRNPUL2Q1KMD3 747 aaKnown RBP13.95□□□□□ -0.18
PSEN1-209ENST00000553855 ARHGEF11O15085 1522 aa13.94□□□□□ -0.18
PSEN1-209ENST00000553855 CUL7Q14999 1698 aa13.93□□□□□ -0.18
PSEN1-209ENST00000553855 CARMIL1Q5VZK9 1371 aa13.93□□□□□ -0.18
PSEN1-209ENST00000553855 CLASP1Q7Z460 1538 aa13.92□□□□□ -0.18
PSEN1-209ENST00000553855 RIMBP3CA6NJZ7 1639 aa13.91□□□□□ -0.18
PSEN1-209ENST00000553855 RIMBP3BA6NNM3 1639 aa13.91□□□□□ -0.18
PSEN1-209ENST00000553855 RIMBP3Q9UFD9 1639 aa13.91□□□□□ -0.18
PSEN1-209ENST00000553855 NUP160Q12769 1436 aa13.9□□□□□ -0.18
PSEN1-209ENST00000553855 CYB5RLQ6IPT4 315 aa13.89□□□□□ -0.19
PSEN1-209ENST00000553855 CEP170Q5SW79 1584 aa13.88□□□□□ -0.19
PSEN1-209ENST00000553855 APLP2Q06481 763 aa13.87□□□□□ -0.19
PSEN1-209ENST00000553855 SAMD1Q6SPF0 538 aaPredicted RBP13.87□□□□□ -0.19
PSEN1-209ENST00000553855 JPH4Q96JJ6 628 aa13.85□□□□□ -0.19
PSEN1-209ENST00000553855 RAPGEF2Q9Y4G8 1499 aa13.84□□□□□ -0.19
PSEN1-209ENST00000553855 RUSC2Q8N2Y8 1516 aa13.84□□□□□ -0.19
PSEN1-209ENST00000553855 EEA1Q15075 1411 aa13.83□□□□□ -0.2
PSEN1-209ENST00000553855 KIAA0586Q9BVV6 1533 aa13.82□□□□□ -0.2
PSEN1-209ENST00000553855 AMER1Q5JTC6 1135 aaPredicted RBP13.81□□□□□ -0.2
PSEN1-209ENST00000553855 ARAP1Q96P48 1450 aa13.8□□□□□ -0.2
PSEN1-209ENST00000553855 CAPN15O75808 1086 aa13.8□□□□□ -0.2
PSEN1-209ENST00000553855 FKBP8Q14318 412 aa13.8□□□□□ -0.2
PSEN1-209ENST00000553855 PRG4Q92954 1404 aaPredicted RBP13.8□□□□□ -0.2
PSEN1-209ENST00000553855 FAM9AQ8IZU1 332 aaPredicted RBP13.78□□□□□ -0.2
PSEN1-209ENST00000553855 RTN4Q9NQC3 1192 aaKnown RBP13.78□□□□□ -0.2
PSEN1-209ENST00000553855 SHROOM2Q13796 1616 aa13.75□□□□□ -0.21
PSEN1-209ENST00000553855 CARMIL2Q6F5E8 1435 aa13.75□□□□□ -0.21
PSEN1-209ENST00000553855 SPINK5Q9NQ38 1064 aaPredicted RBP13.75□□□□□ -0.21
PSEN1-209ENST00000553855 PRXQ9BXM0 1461 aa13.73□□□□□ -0.21
PSEN1-209ENST00000553855 IQGAP2Q13576 1575 aa13.72□□□□□ -0.21
PSEN1-209ENST00000553855 ERCC6L2Q5T890 1561 aa13.71□□□□□ -0.22
PSEN1-209ENST00000553855 NPM1P06748 294 aaKnown RBP eCLIP13.7□□□□□ -0.22
PSEN1-209ENST00000553855 TTBK1Q5TCY1 1321 aaPredicted RBP13.69□□□□□ -0.22
PSEN1-209ENST00000553855 TRHP20396 242 aaPredicted RBP13.69□□□□□ -0.22
PSEN1-209ENST00000553855 TNIKQ9UKE5 1360 aa13.67□□□□□ -0.22
PSEN1-209ENST00000553855 PTPRGP23470 1445 aa13.66□□□□□ -0.22
PSEN1-209ENST00000553855 ZNF219Q9P2Y4 722 aaPredicted RBP13.65□□□□□ -0.22
PSEN1-209ENST00000553855 GOLGA3Q08378 1498 aa13.65□□□□□ -0.22
PSEN1-209ENST00000553855 CTTNBP2Q8WZ74 1663 aa13.63□□□□□ -0.23
PSEN1-209ENST00000553855 UBTFP17480 764 aaKnown RBP13.63□□□□□ -0.23
PSEN1-209ENST00000553855 ATF5Q9Y2D1 282 aaPredicted RBP13.63□□□□□ -0.23
PSEN1-209ENST00000553855 UGGT2Q9NYU1 1516 aa13.63□□□□□ -0.23
PSEN1-209ENST00000553855 KIF21BO75037 1637 aa13.6□□□□□ -0.23
PSEN1-209ENST00000553855 SLC24A1O60721 1099 aa13.59□□□□□ -0.23
PSEN1-209ENST00000553855 RANGAP1P46060 587 aaPredicted RBP13.59□□□□□ -0.23
PSEN1-209ENST00000553855 DISP1Q96F81 1524 aa13.59□□□□□ -0.23
PSEN1-209ENST00000553855 KIAA0556O60303 1618 aa13.57□□□□□ -0.24
PSEN1-209ENST00000553855 UACAQ9BZF9 1416 aa13.56□□□□□ -0.24
PSEN1-209ENST00000553855 P3H3Q8IVL6 736 aa13.55□□□□□ -0.24
PSEN1-209ENST00000553855 ADCY10Q96PN6 1610 aa13.5□□□□□ -0.25
PSEN1-209ENST00000553855 UHRF1BP1LA0JNW5 1464 aa13.5□□□□□ -0.25
PSEN1-209ENST00000553855 DSG3P32926 999 aa13.5□□□□□ -0.25
PSEN1-209ENST00000553855 ABCC2Q92887 1545 aa13.49□□□□□ -0.25
PSEN1-209ENST00000553855 ABCB7O75027 752 aa13.48□□□□□ -0.25
PSEN1-209ENST00000553855 FAM69CQ0P6D2 419 aa13.47□□□□□ -0.25
PSEN1-209ENST00000553855 MAPKBP1O60336 1514 aa13.47□□□□□ -0.25
PSEN1-209ENST00000553855 EFCAB5A4FU69 1503 aa13.46□□□□□ -0.25
PSEN1-209ENST00000553855 PLB1Q6P1J6 1458 aa13.45□□□□□ -0.26
PSEN1-209ENST00000553855 SAMD9Q5K651 1589 aa13.45□□□□□ -0.26
PSEN1-209ENST00000553855 FHOD3Q2V2M9 1422 aa13.43□□□□□ -0.26
PSEN1-209ENST00000553855 ABCC10Q5T3U5 1492 aa13.42□□□□□ -0.26
PSEN1-209ENST00000553855 KDM5BQ9UGL1 1544 aa13.42□□□□□ -0.26
PSEN1-209ENST00000553855 ASXL2Q76L83 1435 aa13.41□□□□□ -0.26
PSEN1-209ENST00000553855 ABCA8O94911 1581 aa13.41□□□□□ -0.26
PSEN1-209ENST00000553855 ARID3CA6NKF2 412 aa13.4□□□□□ -0.26
PSEN1-209ENST00000553855 POLA2Q14181 598 aa13.4□□□□□ -0.26
PSEN1-209ENST00000553855 ATP1B4Q9UN42 357 aaPredicted RBP13.4□□□□□ -0.26
PSEN1-209ENST00000553855 FMN1Q68DA7 1419 aa13.39□□□□□ -0.27
PSEN1-209ENST00000553855 ZCCHC11Q5TAX3 1644 aaKnown RBP13.38□□□□□ -0.27
PSEN1-209ENST00000553855 RAPGEF6Q8TEU7 1601 aa13.37□□□□□ -0.27
PSEN1-209ENST00000553855 KCNH8Q96L42 1107 aa13.36□□□□□ -0.27
PSEN1-209ENST00000553855 DIP2BQ9P265 1576 aa13.36□□□□□ -0.27
PSEN1-209ENST00000553855 ARHGAP35Q9NRY4 1499 aa13.35□□□□□ -0.27
PSEN1-209ENST00000553855 WDR7Q9Y4E6 1490 aa13.35□□□□□ -0.27
PSEN1-209ENST00000553855 CLIP1P30622 1438 aa13.34□□□□□ -0.27
PSEN1-209ENST00000553855 PLEKHD1A6NEE1 506 aa13.34□□□□□ -0.27
PSEN1-209ENST00000553855 ATP10BO94823 1461 aa13.32□□□□□ -0.28
PSEN1-209ENST00000553855 CDK11AQ9UQ88 783 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms