RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 AEBP2Q6ZN18 517 aaPredicted RBP22.71■■□□□ 1.23
PSEN1-209ENST00000553855 CHIC1Q5VXU3 224 aa22.08■■□□□ 1.13
PSEN1-209ENST00000553855 NISCHQ9Y2I1 1504 aa19.9■□□□□ 0.78
PSEN1-209ENST00000553855 SENP3Q9H4L4 574 aaPredicted RBP19.39■□□□□ 0.69
PSEN1-209ENST00000553855 PHF23Q9BUL5 403 aaPredicted RBP19.37■□□□□ 0.69
PSEN1-209ENST00000553855 FOXD1Q16676 465 aa17.96■□□□□ 0.47
PSEN1-209ENST00000553855 PLPPR3Q6T4P5 718 aa17.92■□□□□ 0.46
PSEN1-209ENST00000553855 CCDC180Q9P1Z9 1646 aa17.67■□□□□ 0.42
PSEN1-209ENST00000553855 ABCC9O60706 1549 aa17.35■□□□□ 0.37
PSEN1-209ENST00000553855 ADRA2BP18089 450 aa17.18■□□□□ 0.34
PSEN1-209ENST00000553855 PPP6R1Q9UPN7 881 aa17.16■□□□□ 0.34
PSEN1-209ENST00000553855 PIAS4Q8N2W9 510 aaPredicted RBP16.98■□□□□ 0.31
PSEN1-209ENST00000553855 DCAF8L2P0C7V8 631 aa16.8■□□□□ 0.28
PSEN1-209ENST00000553855 RB1CC1Q8TDY2 1594 aa16.7■□□□□ 0.26
PSEN1-209ENST00000553855 MSH5O43196 834 aa16.68■□□□□ 0.26
PSEN1-209ENST00000553855 NACADO15069 1562 aa16.66■□□□□ 0.26
PSEN1-209ENST00000553855 ZCCHC6Q5VYS8 1495 aaKnown RBP16.56■□□□□ 0.24
PSEN1-209ENST00000553855 MYO15BQ96JP2 1530 aa16.54■□□□□ 0.24
PSEN1-209ENST00000553855 DCAF1Q9Y4B6 1507 aa16.46■□□□□ 0.23
PSEN1-209ENST00000553855 PABPN1Q86U42 306 aaKnown RBP eCLIP16.23■□□□□ 0.19
PSEN1-209ENST00000553855 UNC13AQ9UPW8 1703 aa16.15■□□□□ 0.18
PSEN1-209ENST00000553855 SCRIBQ14160 1630 aa16.15■□□□□ 0.18
PSEN1-209ENST00000553855 KCNA4P22459 653 aa16.09■□□□□ 0.17
PSEN1-209ENST00000553855 BICRAQ9NZM4 1560 aa16.06■□□□□ 0.16
PSEN1-209ENST00000553855 SHROOM4Q9ULL8 1493 aa16.03■□□□□ 0.16
PSEN1-209ENST00000553855 DNAJC5BQ9UF47 199 aa15.95■□□□□ 0.14
PSEN1-209ENST00000553855 SCAF1Q9H7N4 1312 aaKnown RBP15.81■□□□□ 0.12
PSEN1-209ENST00000553855 EHMT2Q96KQ7 1210 aa15.8■□□□□ 0.12
PSEN1-209ENST00000553855 PPP4R3CPQ6ZMV5 832 aa15.76■□□□□ 0.11
PSEN1-209ENST00000553855 EIF4G1Q04637 1599 aaKnown RBP15.71■□□□□ 0.11
PSEN1-209ENST00000553855 CC2D2AQ9P2K1 1620 aa15.65■□□□□ 0.1
PSEN1-209ENST00000553855 MAPK8IP2Q13387 824 aaPredicted RBP15.62■□□□□ 0.09
PSEN1-209ENST00000553855 CECR2Q9BXF3 1484 aa15.59■□□□□ 0.09
PSEN1-209ENST00000553855 NCBP3Q53F19 620 aaKnown RBP15.47■□□□□ 0.07
PSEN1-209ENST00000553855 BAZ1AQ9NRL2 1556 aaPredicted RBP15.46■□□□□ 0.07
PSEN1-209ENST00000553855 SLC4A1APQ9BWU0 796 aaKnown RBP15.46■□□□□ 0.07
PSEN1-209ENST00000553855 SMARCA4P51532 1647 aa15.43■□□□□ 0.06
PSEN1-209ENST00000553855 DNAJC5Q9H3Z4 198 aa15.41■□□□□ 0.06
PSEN1-209ENST00000553855 DMRT2Q9Y5R5 561 aa15.41■□□□□ 0.06
PSEN1-209ENST00000553855 POTEDQ86YR6 584 aa15.4■□□□□ 0.06
PSEN1-209ENST00000553855 SMARCA2P51531 1590 aa15.39■□□□□ 0.05
PSEN1-209ENST00000553855 NCAPD3P42695 1498 aa15.36■□□□□ 0.05
PSEN1-209ENST00000553855 ATAD2BQ9ULI0 1458 aa15.36■□□□□ 0.05
PSEN1-209ENST00000553855 CNKSR2Q8WXI2 1034 aa15.36■□□□□ 0.05
PSEN1-209ENST00000553855 CSRNP3Q8WYN3 585 aa15.31■□□□□ 0.04
PSEN1-209ENST00000553855 MROH2BQ7Z745 1585 aa15.31■□□□□ 0.04
PSEN1-209ENST00000553855 BAZ1BQ9UIG0 1483 aaKnown RBP15.29■□□□□ 0.04
PSEN1-209ENST00000553855 HMGXB3Q12766 1538 aa15.27■□□□□ 0.04
PSEN1-209ENST00000553855 PEG3Q9GZU2 1588 aa15.25■□□□□ 0.03
PSEN1-209ENST00000553855 NPM3O75607 178 aaKnown RBP15.24■□□□□ 0.03
PSEN1-209ENST00000553855 RSF1Q96T23 1441 aaPredicted RBP15.16■□□□□ 0.02
PSEN1-209ENST00000553855 WIZO95785 1651 aa15.13■□□□□ 0.01
PSEN1-209ENST00000553855 RNF216Q9NWF9 866 aaPredicted RBP15.08■□□□□ 0
PSEN1-209ENST00000553855 ERCC6Q03468 1493 aa15.03■□□□□ -0
PSEN1-209ENST00000553855 TOP2AP11388 1531 aaKnown RBP15.02■□□□□ -0
PSEN1-209ENST00000553855 HOXD11P31277 338 aaPredicted RBP15.01□□□□□ -0.01
PSEN1-209ENST00000553855 LAMC3Q9Y6N6 1575 aa14.97□□□□□ -0.01
PSEN1-209ENST00000553855 NESP48681 1621 aa14.95□□□□□ -0.02
PSEN1-209ENST00000553855 CADPSQ9ULU8 1353 aa14.95□□□□□ -0.02
PSEN1-209ENST00000553855 PDS5BQ9NTI5 1447 aa14.93□□□□□ -0.02
PSEN1-209ENST00000553855 DCAF8L1A6NGE4 600 aa14.91□□□□□ -0.02
PSEN1-209ENST00000553855 SUPT5HO00267 1087 aaKnown RBP14.9□□□□□ -0.02
PSEN1-209ENST00000553855 CCDC88BA6NC98 1476 aa14.84□□□□□ -0.03
PSEN1-209ENST00000553855 CFTRP13569 1480 aa14.82□□□□□ -0.04
PSEN1-209ENST00000553855 ZBTB22O15209 634 aa14.82□□□□□ -0.04
PSEN1-209ENST00000553855 CUX2O14529 1486 aa14.82□□□□□ -0.04
PSEN1-209ENST00000553855 CEP164Q9UPV0 1460 aa14.77□□□□□ -0.04
PSEN1-209ENST00000553855 FANCD2Q9BXW9 1451 aa14.76□□□□□ -0.05
PSEN1-209ENST00000553855 KIF21AQ7Z4S6 1674 aa14.75□□□□□ -0.05
PSEN1-209ENST00000553855 MRC2Q9UBG0 1479 aa14.73□□□□□ -0.05
PSEN1-209ENST00000553855 THOC2Q8NI27 1593 aaKnown RBP14.71□□□□□ -0.05
PSEN1-209ENST00000553855 PRDM2Q13029 1718 aa14.64□□□□□ -0.07
PSEN1-209ENST00000553855 WDR62O43379 1518 aa14.63□□□□□ -0.07
PSEN1-209ENST00000553855 FOXD4L1Q9NU39 408 aa14.63□□□□□ -0.07
PSEN1-209ENST00000553855 ABCC8Q09428 1581 aa14.59□□□□□ -0.07
PSEN1-209ENST00000553855 URB2Q14146 1524 aaKnown RBP14.56□□□□□ -0.08
PSEN1-209ENST00000553855 TOPBP1Q92547 1522 aa14.51□□□□□ -0.09
PSEN1-209ENST00000553855 DNMBPQ6XZF7 1577 aa14.49□□□□□ -0.09
PSEN1-209ENST00000553855 IFT140Q96RY7 1462 aa14.47□□□□□ -0.09
PSEN1-209ENST00000553855 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.44□□□□□ -0.12e-7■□□□□ 10.6
PSEN1-209ENST00000553855 POLA1P09884 1462 aaPredicted RBP14.38□□□□□ -0.11
PSEN1-209ENST00000553855 SOGA1O94964 1423 aa14.38□□□□□ -0.11
PSEN1-209ENST00000553855 CUX1P39880 1505 aa14.36□□□□□ -0.11
PSEN1-209ENST00000553855 FGD5Q6ZNL6 1462 aa14.36□□□□□ -0.11
PSEN1-209ENST00000553855 WRNQ14191 1432 aaPredicted RBP eCLIP14.35□□□□□ -0.11
PSEN1-209ENST00000553855 ZNF608Q9ULD9 1512 aaPredicted RBP14.32□□□□□ -0.12
PSEN1-209ENST00000553855 RAD54L2Q9Y4B4 1467 aa14.31□□□□□ -0.12
PSEN1-209ENST00000553855 TARBP1Q13395 1621 aaKnown RBP14.3□□□□□ -0.12
PSEN1-209ENST00000553855 AQRO60306 1485 aaKnown RBP eCLIP14.28□□□□□ -0.12
PSEN1-209ENST00000553855 TDRD9Q8NDG6 1382 aaKnown RBP14.28□□□□□ -0.12
PSEN1-209ENST00000553855 TRIM41Q8WV44 630 aa14.28□□□□□ -0.12
PSEN1-209ENST00000553855 EIF4G3O43432 1585 aaKnown RBP14.27□□□□□ -0.12
PSEN1-209ENST00000553855 OSCARQ8IYS5 282 aa14.27□□□□□ -0.13
PSEN1-209ENST00000553855 WDR97A6NE52 1622 aa14.26□□□□□ -0.13
PSEN1-209ENST00000553855 TOP2BQ02880 1626 aa14.26□□□□□ -0.13
PSEN1-209ENST00000553855 BIVM-ERCC5R4GMW8 1640 aa14.24□□□□□ -0.13
PSEN1-209ENST00000553855 FBLN2P98095 1184 aa14.24□□□□□ -0.13
PSEN1-209ENST00000553855 SYNJ1O43426 1573 aa14.23□□□□□ -0.13
PSEN1-209ENST00000553855 RNF39Q9H2S5 420 aa14.23□□□□□ -0.13
PSEN1-209ENST00000553855 ABCA10Q8WWZ4 1543 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms