RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 CUX2O14529 1486 aa16.2■□□□□ 0.18
CDH4-201ENST00000543233 CADPSQ9ULU8 1353 aa16.19■□□□□ 0.18
CDH4-201ENST00000543233 PRXQ9BXM0 1461 aa16.17■□□□□ 0.18
CDH4-201ENST00000543233 BIVM-ERCC5R4GMW8 1640 aa16.15■□□□□ 0.18
CDH4-201ENST00000543233 NESP48681 1621 aa16.15■□□□□ 0.18
CDH4-201ENST00000543233 ARAP1Q96P48 1450 aa16.12■□□□□ 0.17
CDH4-201ENST00000543233 MSH5O43196 834 aa16.11■□□□□ 0.17
CDH4-201ENST00000543233 RTN4Q9NQC3 1192 aaKnown RBP16.1■□□□□ 0.17
CDH4-201ENST00000543233 IGF1RP08069 1367 aa16.1■□□□□ 0.17
CDH4-201ENST00000543233 FGD5Q6ZNL6 1462 aa16.09■□□□□ 0.17
CDH4-201ENST00000543233 CARMIL1Q5VZK9 1371 aa16.08■□□□□ 0.16
CDH4-201ENST00000543233 PLEKHG5O94827 1062 aa16.05■□□□□ 0.16
CDH4-201ENST00000543233 FANCD2Q9BXW9 1451 aa16.04■□□□□ 0.16
CDH4-201ENST00000543233 RAD54L2Q9Y4B4 1467 aa16.04■□□□□ 0.16
CDH4-201ENST00000543233 ERICH3Q5RHP9 1530 aa16.04■□□□□ 0.16
CDH4-201ENST00000543233 FKBP8Q14318 412 aa16.02■□□□□ 0.16
CDH4-201ENST00000543233 PKNOX2Q96KN3 472 aa16.02■□□□□ 0.16
CDH4-201ENST00000543233 MYT1LQ9UL68 1186 aa16.02■□□□□ 0.16
CDH4-201ENST00000543233 ARHGAP35Q9NRY4 1499 aa16.02■□□□□ 0.15
CDH4-201ENST00000543233 FAM50AQ14320 339 aaKnown RBP15.99■□□□□ 0.15
CDH4-201ENST00000543233 ERICH6BQ5W0A0 696 aa15.97■□□□□ 0.15
CDH4-201ENST00000543233 NBR1Q14596 966 aa15.96■□□□□ 0.14
CDH4-201ENST00000543233 TDRD9Q8NDG6 1382 aaKnown RBP15.95■□□□□ 0.14
CDH4-201ENST00000543233 NEFLP07196 543 aa15.92■□□□□ 0.14
CDH4-201ENST00000543233 IL27Q8NEV9 243 aa15.91■□□□□ 0.14
CDH4-201ENST00000543233 CCNB3Q8WWL7 1395 aa15.9■□□□□ 0.14
CDH4-201ENST00000543233 FHOD3Q2V2M9 1422 aa15.9■□□□□ 0.14
CDH4-201ENST00000543233 POLA1P09884 1462 aaPredicted RBP15.89■□□□□ 0.13
CDH4-201ENST00000543233 PODXL2Q9NZ53 605 aa15.89■□□□□ 0.13
CDH4-201ENST00000543233 ARID3CA6NKF2 412 aa15.88■□□□□ 0.13
CDH4-201ENST00000543233 TOPBP1Q92547 1522 aa15.87■□□□□ 0.13
CDH4-201ENST00000543233 DHX57Q6P158 1386 aaKnown RBP15.87■□□□□ 0.13
CDH4-201ENST00000543233 ERCC6Q03468 1493 aa15.82■□□□□ 0.12
CDH4-201ENST00000543233 PRDM2Q13029 1718 aa15.81■□□□□ 0.12
CDH4-201ENST00000543233 DAXXQ9UER7 740 aaPredicted RBP15.81■□□□□ 0.12
CDH4-201ENST00000543233 PHLDB1Q86UU1 1377 aa15.81■□□□□ 0.12
CDH4-201ENST00000543233 RRBP1Q9P2E9 1410 aaKnown RBP15.8■□□□□ 0.12
CDH4-201ENST00000543233 DNMBPQ6XZF7 1577 aa15.79■□□□□ 0.12
CDH4-201ENST00000543233 URB2Q14146 1524 aaKnown RBP15.78■□□□□ 0.12
CDH4-201ENST00000543233 FANCIQ9NVI1 1328 aa15.78■□□□□ 0.12
CDH4-201ENST00000543233 RAB3GAP2Q9H2M9 1393 aa15.77■□□□□ 0.12
CDH4-201ENST00000543233 PDS5BQ9NTI5 1447 aa15.76■□□□□ 0.11
CDH4-201ENST00000543233 RTL5Q5HYW3 569 aaPredicted RBP15.76■□□□□ 0.11
CDH4-201ENST00000543233 SIN3AQ96ST3 1273 aa15.76■□□□□ 0.11
CDH4-201ENST00000543233 ABCA10Q8WWZ4 1543 aa15.76■□□□□ 0.11
CDH4-201ENST00000543233 FHAD1B1AJZ9 1412 aa15.74■□□□□ 0.11
CDH4-201ENST00000543233 LRRC9Q6ZRR7 1453 aa15.74■□□□□ 0.11
CDH4-201ENST00000543233 TIAM1Q13009 1591 aa15.73■□□□□ 0.11
CDH4-201ENST00000543233 CDK11AQ9UQ88 783 aaPredicted RBP15.72■□□□□ 0.11
CDH4-201ENST00000543233 PCF11O94913 1555 aaKnown RBP15.71■□□□□ 0.1
CDH4-201ENST00000543233 HIRIP3Q9BW71 556 aaPredicted RBP15.7■□□□□ 0.1
CDH4-201ENST00000543233 GAPVD1Q14C86 1478 aa15.7■□□□□ 0.1
CDH4-201ENST00000543233 MTUS2Q5JR59 1369 aa15.7■□□□□ 0.1
CDH4-201ENST00000543233 LAMC3Q9Y6N6 1575 aa15.7■□□□□ 0.1
CDH4-201ENST00000543233 KIF21AQ7Z4S6 1674 aa15.67■□□□□ 0.1
CDH4-201ENST00000543233 AQRO60306 1485 aaKnown RBP eCLIP15.67■□□□□ 0.1
CDH4-201ENST00000543233 CHIC2Q9UKJ5 165 aa15.66■□□□□ 0.1
CDH4-201ENST00000543233 SETD5Q9C0A6 1442 aa15.66■□□□□ 0.1
CDH4-201ENST00000543233 TIMELESSQ9UNS1 1208 aa15.65■□□□□ 0.1
CDH4-201ENST00000543233 KCNH8Q96L42 1107 aa15.64■□□□□ 0.09
CDH4-201ENST00000543233 FBLN2P98095 1184 aa15.63■□□□□ 0.09
CDH4-201ENST00000543233 NOP58Q9Y2X3 529 aaKnown RBP15.61■□□□□ 0.09
CDH4-201ENST00000543233 CASKIN1Q8WXD9 1431 aa15.6■□□□□ 0.09
CDH4-201ENST00000543233 FMN1Q68DA7 1419 aa15.6■□□□□ 0.09
CDH4-201ENST00000543233 RRP7BPQ9NSQ0 103 aa15.59■□□□□ 0.09
CDH4-201ENST00000543233 FYCO1Q9BQS8 1478 aa15.57■□□□□ 0.08
CDH4-201ENST00000543233 DDX10Q13206 875 aaKnown RBP15.56■□□□□ 0.08
CDH4-201ENST00000543233 GLIPR1L2Q4G1C9 344 aa15.56■□□□□ 0.08
CDH4-201ENST00000543233 CUL7Q14999 1698 aa15.56■□□□□ 0.08
CDH4-201ENST00000543233 VSIG10Q8N0Z9 540 aa15.55■□□□□ 0.08
CDH4-201ENST00000543233 MAP3K1Q13233 1512 aa15.54■□□□□ 0.08
CDH4-201ENST00000543233 IRX6P78412 446 aaPredicted RBP15.54■□□□□ 0.08
CDH4-201ENST00000543233 MRC2Q9UBG0 1479 aa15.54■□□□□ 0.08
CDH4-201ENST00000543233 PAK3O75914 559 aaPredicted RBP15.54■□□□□ 0.08
CDH4-201ENST00000543233 TRIM52Q96A61 297 aa15.54■□□□□ 0.08
CDH4-201ENST00000543233 EFCAB5A4FU69 1503 aa15.53■□□□□ 0.08
CDH4-201ENST00000543233 MAPKBP1O60336 1514 aa15.53■□□□□ 0.08
CDH4-201ENST00000543233 FGD6Q6ZV73 1430 aa15.53■□□□□ 0.08
CDH4-201ENST00000543233 ZNF608Q9ULD9 1512 aaPredicted RBP15.51■□□□□ 0.07
CDH4-201ENST00000543233 CTTNBP2Q8WZ74 1663 aa15.5■□□□□ 0.07
CDH4-201ENST00000543233 ABCA5Q8WWZ7 1642 aa15.5■□□□□ 0.07
CDH4-201ENST00000543233 SNAPC4Q5SXM2 1469 aa15.5■□□□□ 0.07
CDH4-201ENST00000543233 PTPRKQ15262 1439 aa15.49■□□□□ 0.07
CDH4-201ENST00000543233 ZMYND15Q9H091 742 aa15.49■□□□□ 0.07
CDH4-201ENST00000543233 A0A0U1RQG5 324 aaPredicted RBP15.49■□□□□ 0.07
CDH4-201ENST00000543233 CFAP43Q8NDM7 1665 aa15.48■□□□□ 0.07
CDH4-201ENST00000543233 NCOA2Q15596 1464 aa15.48■□□□□ 0.07
CDH4-201ENST00000543233 WDR97A6NE52 1622 aa15.46■□□□□ 0.07
CDH4-201ENST00000543233 FOXD1Q16676 465 aa15.46■□□□□ 0.06
CDH4-201ENST00000543233 CHMP7Q8WUX9 453 aaPredicted RBP15.46■□□□□ 0.06
CDH4-201ENST00000543233 TONSLQ96HA7 1378 aa15.44■□□□□ 0.06
CDH4-201ENST00000543233 TARBP1Q13395 1621 aaKnown RBP15.44■□□□□ 0.06
CDH4-201ENST00000543233 ZNF777Q9ULD5 760 aaPredicted RBP15.43■□□□□ 0.06
CDH4-201ENST00000543233 CDK13Q14004 1512 aaKnown RBP15.43■□□□□ 0.06
CDH4-201ENST00000543233 MYOM3Q5VTT5 1437 aa15.42■□□□□ 0.06
CDH4-201ENST00000543233 CCDC18Q5T9S5 1454 aa15.42■□□□□ 0.06
CDH4-201ENST00000543233 GRIN2BQ13224 1484 aa15.42■□□□□ 0.06
CDH4-201ENST00000543233 PPP1R15AO75807 674 aaPredicted RBP15.41■□□□□ 0.06
CDH4-201ENST00000543233 BRPF3Q9ULD4 1205 aa15.41■□□□□ 0.06
CDH4-201ENST00000543233 ZNF644Q9H582 1327 aaPredicted RBP15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms